ID: uc004dex.3_intron_25_0_chrX_40572295_r.5p
GENE: (5)
chrX:40572830-40573079-


(2)
AGO2.ip
(3)
BREAST
(13)
CELL-LINE
(2)
HELA
(2)
LIVER
(1)
OTHER
(2)
SKIN

Sense strand
TCGGCTTGTAACCACAGATCTTCCTCCTCAGTTAGCAAATCTTACAGTTGGTATGTATCTGAAATTTATTTTTTTAAGAGTTGATGGCCAGGTGCGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGACTGAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGCGGTGGCCCGCACCTGTAATC
.......................................................................(((((((......(((((......(((((.((.(((((((...(((((..(((...))).)))))))))))))))))))...)))))....))))))).................................................................................
................................................................65..........................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM359174(GSM359174)
hela_5_1. (hela)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
.....................................................................TTTTTTAAGAGTTGACTG...................................................................................................................................................................18305.000.00274.007.0010.00--7.006.00----1.00------------
.....................................................................TTTTTTAAGAGTTGACTGA..................................................................................................................................................................19304.000.00209.0057.0022.00--8.007.00----1.00------------
.....................................................................TTTTTTAAGAGTTGACTGT..................................................................................................................................................................194.000.004.00-----------------------
....................................................................TTTTTTTAAGAGTTGACTGA..................................................................................................................................................................203.000.003.00-----------------------
........................................................................................................................................................AGGTCAGGAGTTTGAGACCAGCCGCCC.......................................................................272.000.00---2.00--------------------
....................................................................TTTTTTTAAGAGTTGACTG...................................................................................................................................................................192.000.002.00-----------------------
...................................................................ATTTTTTTAAGAGTTGACTGA..................................................................................................................................................................212.000.00--2.00---------------------
...................................................................................................................................................ACTTGAGGTCAGGAGTTTGAGACCAGCCGGTC.......................................................................322.000.00---2.00--------------------
................................................................................................................................................ATCACTTGAGGTCAGGAGTTTTAAC.................................................................................252.000.00---2.00--------------------
...................................................................ATTTTTTTAAGAGTTGACTG...................................................................................................................................................................202.000.00--2.00---------------------
........................................................................................................................................................AGGTCAGGAGTTTGAGACCAGCCGTCC.......................................................................272.000.00---1.00--------1.00-----------
....................................................................................................................................................CTTGAGGTCAGGAGTTTGAGACCAGCCGGTC.......................................................................312.000.00---2.00--------------------
.............................................................................................................................................CAGATCACTTGAGGTCAGGAGTAGA....................................................................................252.000.00----------2.00-------------
.....................................................................TTTTTTAAGAGTTGATTGA..................................................................................................................................................................192.000.002.00-----------------------
...................................................................................ATGGCCAGGTGCGGTGGCTCATGCCAGC...........................................................................................................................................281.000.00---1.00--------------------
.........................................................................................AGGTGCGGTGGCTCATGCCGT............................................................................................................................................211.000.00---1.00--------------------
...............................................................ATTTATTTTTTTAAGCACC........................................................................................................................................................................191.000.00--------------1.00---------
...............................................................................................................................GAGACTGAGGCAGGCATATA.......................................................................................................201.000.00------------------1.00-----
.............ACAGATCTTCCTCCTCAGTTAGCAAATCT................................................................................................................................................................................................................2911.001.00---------------------1.00--
.........................................................................................................................................................................................................................ATTAGCTGGGTGCGGTGGGCGC...........221.000.00---1.00--------------------
.....................................................................TTTTTTAAGAGTTGAATGA..................................................................................................................................................................191.000.001.00-----------------------
...........................................................................................................................................................TCAGGAGTTTGAGACCAGCCGCCC.......................................................................241.000.00---1.00--------------------
.....................................................................................................................AGCACTTTGGGAGACTGAGGCAGCGG...........................................................................................................2601.001.00---1.00--------------------
.............................................................................................................................GGGAGACTGAGGCAGGCAGATGAAG....................................................................................................251.000.00-------------------1.00----
........................................................................................................................................................AGGTCAGGAGTTTGAGACCAGCCGGTC.......................................................................271.000.00---1.00--------------------
.....................................................................TTTTTTAAGAGTTGATTGT..................................................................................................................................................................191.000.001.00-----------------------
.......................................................................................................................................................GAGGTCAGGAGTTTGAGACCAGCCGGTC.......................................................................281.000.00---1.00--------------------
..............................................................................................................................................................................................................AAAATACAAAAATTAGCTGGGTGCGGGGGC..............301.000.00---1.00--------------------
......................................................................TTTTTAAGAGTTGATTGA..................................................................................................................................................................181.000.001.00-----------------------
............................................................................................................................TGGGAGACTGAGGCAGGGACA.........................................................................................................211.000.00----1.00-------------------
...........................................................................................................................................................................................................................TAGCTGGGTGCGGTGGGGGC...........201.000.00----1.00-------------------
.....................................................................................................................................................TTGAGGTCAGGAGTTTGAGACCAGCCCGCC.......................................................................301.000.00---1.00--------------------
.....................................................................TTTTTTAAGAGTTGAATG...................................................................................................................................................................181.000.001.00-----------------------
..........................................................................................................................TTTGGGAGACTGAGGCAGGCAGCACG......................................................................................................261.000.00---1.00--------------------
...............................................................ATTTATTTTTTTAAGCGCC........................................................................................................................................................................191.000.00------------1.00-----------
...........................................................................................................................................................................................................................TAGCTGGGTGCGGTGGCCCGCACCTG.....2611.001.00---1.00--------------------
..........................................................................................................................................AGGCAGATCACTTGAGGTCAGGAGTTTGAGA.................................................................................3101.001.00---------1.00--------------
...........................................................................................................................................................................AGCCTGGCCAACATGGTGAAACCCCATCAAAT...............................................321.000.00---1.00--------------------
.....................................................................................................................AGCACTTTGGGAGACTGAGGCAG..............................................................................................................2301.001.00---------1.00--------------
........................................................................................................................................................................................................................AATTAGCTGGGTGCGGCATG..............201.000.00----1.00-------------------
..........................................................................................................................TTTGGGAGACTGAGGCAGGCAGATCGAT....................................................................................................281.000.00----1.00-------------------
...........................................................................................................................TTGGGAGACTGAGGCAGCGG...........................................................................................................201.000.00----1.00-------------------
............................................................................................................................TGGGAGACTGAGGCAGCGG...........................................................................................................191.000.00----1.00-------------------
...GCTTGTAACCACAGATCTTCCTCCTC.............................................................................................................................................................................................................................2611.001.00----------------------1.00-
..........................................................................................................................................AGGCAGATCACTTGAGGTCAGGAGGA......................................................................................261.000.00----1.00-------------------
........................................................................................................................................................................................................................AATTAGCTGGGTGCGGTG................1801.001.00--------------------1.00---
......................................................................................................................................................TGAGGTCAGGAGTTTGAGACCAGCCGTCC.......................................................................291.000.00---1.00--------------------
......TGTAACCACAGATCTTCCTCCTCAGT..........................................................................................................................................................................................................................2611.001.00---------------1.00--------
.....................................................................TTTTTTAAGAGTTGACTGC..................................................................................................................................................................191.000.001.00-----------------------
..........................................................................................................................TTTGGGAGACTGAGGCAGGCAGATTACA....................................................................................................281.000.00----1.00-------------------
........................................................................................................................ACTTTGGGAGACTGAGGCAGGCAGGGC.......................................................................................................271.000.00----1.00-------------------
................................................................................................................ATCTCAGCACTTTGGGAGACTGAGGCAGGCGGC.........................................................................................................331.000.00----1.00-------------------
.....................................................................TTTTTTAAGAGTTGACAA...................................................................................................................................................................181.000.001.00-----------------------
...................................................................................................................................................ACTTGAGGTCAGGAGTTTGAGACCAGCCTCAGT......................................................................331.000.00-----------------1.00------
........................................................................................................................ACTTTGGGAGACTGAGGCAGGCAGAGC.......................................................................................................271.000.00----1.00-------------------
......................................................................................................................................AGGCAGGCAGATCACTTGAGGTCAGGAGCCC.....................................................................................311.000.00----1.00-------------------
...................................................................................ATGGCCAGGTGCGGTGGCTA...................................................................................................................................................201.000.00---1.00--------------------
.......................................................................................................................................................................................................................AAATTAGCTGGGTGCGGTGGCCC............2330.330.33---0.33--------------------

Antisense strand
TCGGCTTGTAACCACAGATCTTCCTCCTCAGTTAGCAAATCTTACAGTTGGTATGTATCTGAAATTTATTTTTTTAAGAGTTGATGGCCAGGTGCGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGACTGAGGCAGGCAGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGTGCGGTGGCCCGCACCTGTAATC
.......................................................................(((((((......(((((......(((((.((.(((((((...(((((..(((...))).)))))))))))))))))))...)))))....))))))).................................................................................
................................................................65..........................................................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR029128(GSM416757)
H520. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM359174(GSM359174)
hela_5_1. (hela)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
..................................CAACTGTAAGATTTGC........................................................................................................................................................................................................ 1623.003.00-------3.00----------------
.......................................................................................CCAGGTGCGGTGGCTCATGAC.............................................................................................................................................. 212.000.00----2.00-------------------
..................................GCAAATCTTACAGTTGAGA..................................................................................................................................................................................................... 191.500.00--------1.50---------------
..................................................................................GATGGCCAGGTGCGGTGGCTCGTG................................................................................................................................................ 241.000.00---1.00--------------------
..................................GCAAATCTTACAGTTGAGAT.................................................................................................................................................................................................... 201.000.00--------1.00---------------
......................................................................................................................................................................AGACCAGCCTGGCCAACATGGTGAAACCCCAG.................................................... 321.000.00----------------1.00-------
.......................................................................................CCAGGTGCGGTGGCTCATGCCTACG.......................................................................................................................................... 251.000.00----1.00-------------------
..................................................................................GATGGCCAGGTGCGGTGGCTTGGG................................................................................................................................................ 241.000.00----1.00-------------------
.......................................................................................CCAGGTGCGGTGGCTCATGCCTGTAG......................................................................................................................................... 261.000.00---1.00--------------------
.......................................................................................CCAGGTGCGGTGGCTCAGAC............................................................................................................................................... 201.000.00----1.00-------------------
......................................................................................................................................................................................CATGGTGAAACCCCATCTCTACTGCCC......................................... 271.000.00---1.00--------------------
......................................................................................GCCAGGTGCGGTGGCTCATGCCTGTAATGGCT.................................................................................................................................... 321.000.00---1.00--------------------
.............................................................................................................................................................................................................................GCTGGGTGCGGTGGCCCGCACCTGTC... 261.000.00---1.00--------------------
.............................................................................................................................................CAGATCACTTGAGGTAAAA.......................................................................................... 191.000.00-------------1.00----------
.............................................................................................................................................................................................................................GCTGGGTGCGGTGGCCCGCACCAG..... 241.000.00---1.00--------------------
...................................CAAATCTTACAGTTGATC..................................................................................................................................................................................................... 180.710.00-----------------------0.71
..................................GCAAATCTTACAGTTGAA...................................................................................................................................................................................................... 180.500.00-------0.50----------------
...................................CAACTGTAAGATTTG........................................................................................................................................................................................................ 1570.140.14-------0.14----------------