ID: uc004den.3_intron_6_0_chrX_39922325_r.3p
GENE: (8)
chrX:39922275-39922524-


(1)
AGO2.ip
(4)
B-CELL
(1)
BREAST
(9)
CELL-LINE
(3)
CERVIX
(2)
HEART
(1)
HELA
(1)
KIDNEY
(1)
OTHER
(14)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CTTAGGTGCCGTTTGAATGTGGTATAATTAAAATATTAATGCTTTGAAAACATAATTGGTGTATCTTTAAAAACTGAAGCCGCTCCAGTGATCAGTGTTAACAATGGGCTTTTCTTCCTGCACTGGCTACAACTGTGTAACGCCCGCTTCTTCTCCCGTCTCCCATCCGCCCGCCACCCCGTCACCCCCTCCGTATTTAGGCTTGCCTGTGTTCTCCGGCTCTCCGCCCATGAAGAGTCTTTCATCCACC
.......................................................................................................................((...(((((((....))))..))).)).......................................................................................................
......................................................................................................................119..................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189782SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
...........................................................................................................................TGGCTACAACTGTGTACGCC...........................................................................................................2016.000.0012.00-------1.00-2.00---------------1.00------------
...........................................................................................................................TGGCTACAACTGTGTAACGC...........................................................................................................20110.0010.00-----1.00-1.00----1.00-----1.00-1.00--1.00-----1.00-1.001.00-1.00----
...........................................................................................................................TGGCTACAACTGTGTAACG............................................................................................................1917.007.00--1.002.00-1.001.00---------1.00----------------1.00-----
...........................................................................................................................TGGCTACAACTGTGTACCGC...........................................................................................................206.000.00--1.00----1.00-2.00-2.00---------------------------
...........................................................................................................................TGGCTACAACTGTGTATGT............................................................................................................192.000.00------1.00-1.00------------------------------
...........................................................................................................................TGGCTACAACTGTGTAACGCAAT........................................................................................................2312.0010.00----2.00----------------------------------
....................................................................................................................................................TCTTCTCCCGTCTCCCCCCT..................................................................................201.000.00-------------------1.00-------------------
....................................................................................................................................................TCTTCTCCCGTCTCCGGCC...................................................................................191.000.00-1.00-------------------------------------
...............................................................................................................................................................................ACCCCGTCACCCCCTCTC.........................................................181.000.00-----------------1.00---------------------
....................................................................................................................................................TCTTCTCCCGTCTCCGCC....................................................................................181.000.00--------------1.00------------------------
....................................................................................................................................................TCTTCTCCCGTCTCCTGTT...................................................................................191.000.00-1.00-------------------------------------
....................................................................................................................................................TCTTCTCCCGTCTCCCGCTG..................................................................................201.000.00-1.00-------------------------------------
...............................................................................CCGCTCCAGTGATCAGTGTTAACAATG................................................................................................................................................2711.001.00----------------------1.00----------------
............TTGAATGTGGTATAAACCG...........................................................................................................................................................................................................................191.000.00-------------1.00-------------------------
.......................................................................................................................................................................................................GGCTTGCCTGTGTTCTCCGGCTCTCC.........................2611.001.00---------------------1.00-----------------
....................................................................................................................................................TCTTCTCCCGTCTCCAGTT...................................................................................191.000.00-1.00-------------------------------------
..................................................................TTAAAAACTGAAGCCGCTCC....................................................................................................................................................................2011.001.00-------------------------1.00-------------
....................................................................................................................................................TCTTCTCCCGTCTCCGGCT...................................................................................191.000.00-1.00-------------------------------------
....................................................................................................................................................TCTTCTCCCGTCTCCCGGT...................................................................................191.000.00-1.00-------------------------------------
...........................................................................................................................TGGCTACAACTGTGTAACGA...........................................................................................................2011.007.00---------------1.00-----------------------
................................................................................................................................................................................................................GTGTTCTCCGGCTCT...........................1520.500.50------------------------------------0.50--
...........................................................................................................................TGGCTACAACTGTGT................................................................................................................1590.110.11-------------------------------------0.11-
...........................................................................................................................TGGCTACAACTGTGTGCGT............................................................................................................1990.110.11--------------------------------------0.11

Antisense strand
CTTAGGTGCCGTTTGAATGTGGTATAATTAAAATATTAATGCTTTGAAAACATAATTGGTGTATCTTTAAAAACTGAAGCCGCTCCAGTGATCAGTGTTAACAATGGGCTTTTCTTCCTGCACTGGCTACAACTGTGTAACGCCCGCTTCTTCTCCCGTCTCCCATCCGCCCGCCACCCCGTCACCCCCTCCGTATTTAGGCTTGCCTGTGTTCTCCGGCTCTCCGCCCATGAAGAGTCTTTCATCCACC
.......................................................................................................................((...(((((((....))))..))).)).......................................................................................................
......................................................................................................................119..................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR189782SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040011(GSM532896)
G529T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
...............................................................................................................TTCTTCCTGCACTGGGGC......................................................................................................................... 181.000.00------------------------------1.00--------
.............................................................................................................................................................................................................CCTGTGTTCTCCGGCTGAG.......................... 191.000.00------------------------1.00--------------
...................................................................................................................................................................................................................TTCTCCGGCTCTCCGGCGC.................... 191.000.00----------------------------1.00----------
..........................................................................................................................................................................................................................GCTCTCCGCCCATGAAGTA............. 191.000.00---------------------------1.00-----------
................................................................................................................TCTTCCTGCACTGGCGGC........................................................................................................................ 181.000.00-----------------------------------1.00---