ID: uc004dei.3_intron_0_0_chrX_38660741_f.3p
GENE: (1)
chrX:38663363-38663612+


(8)
B-CELL 		(2)
BRAIN 		(13)
BREAST 		(28)
CELL-LINE 		(7)
CERVIX 		(5)
HEART 		(3)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGCCCCGCCCCCGCTGTAGAAAGGGCCGGGCGAGTGTTACTCGCGGTCATCCCGGCCTGGGCCTTTTATCTCGGTGCTGCCGGGGGAGGCGGGAGGAGGAGACACCAGGGGTGGCCCTGAGCGCCGGCGACACCTTTCCTGGACTATAAATTGAGCACCTGGGATGGGTAGGGGGCCAACGCAGTCACCGCCGTCCGCAGTCACAGTCCAGCCACTGACCGCAGCAGCGCCCTTGCGTAGCAGCCGCTTG
...............................................................................................................(((((((..((....))...((((.((((((................)))))).))))..)))))))........................................................................
.........................................................................................................106.........................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040039(GSM532924)
G531T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................TGGGATGGGTAGGGGAGCG........................................................................1913.000.006.00---6.00-----------------------------------------------------------1.00------------------------------------
..............................................................................................................GTGGCCCTGAGCGCCGGCGAC.......................................................................................................................2116.006.00------5.00--------1.00-------------------------------------------------------------------------------------
................................................................................CGGGGGAGGCGGGAGGAGGA......................................................................................................................................................2015.005.00---4.00-------------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................................CACCTGGGATGGGTAGGGGG...........................................................................2015.005.00-----2.00-----3.00-----------------------------------------------------------------------------------------
............................................................GCCTTTTATCTCGGTGCTG...........................................................................................................................................................................1914.004.00--------------2.00----------2.00---------------------------------------------------------------------------
................................................................................CGGGGGAGGCGGGAGGAGG.......................................................................................................................................................1914.004.00---------------------------------------------------------1.00-----------------1.00---------------1.001.00--------
.................................................................................................................................................................................AACGCAGTCACCGCCGTCCG.....................................................2013.003.00---------------------------------1.00----2.00--------------------------------------------------------------
......................................................................................................................................TTTCCTGGACTATAAATTGA................................................................................................2013.003.00----------------------3.00------------------------------------------------------------------------------
......................................................................................AGGCGGGAGGAGGAGACATT................................................................................................................................................203.000.00---------3.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................CTGGGATGGGTAGGGGGC..........................................................................1813.003.00-1.001.00--------------------1.00-----------------------------------------------------------------------------
..........................................................GGGCCTTTTATCTCGGTG..............................................................................................................................................................................1813.003.00---------1.00----------1.00--------------------------------------------------------------------1.00-----------
.................................................................................................................................................................................................................AGCCACTGACCGCAGCAG.......................1812.002.00-------------------------------2.00---------------------------------------------------------------------
..........CCGCTGTAGAAAGGGCCG..............................................................................................................................................................................................................................1812.002.00-1.00--------------------------------1.00------------------------------------------------------------------
...............................................CATCCCGGCCTGGGCCTTTTAT.....................................................................................................................................................................................2212.002.00-------------------------------------------------------------1.00--------1.00------------------------------
......................................................GCCTGGGCCTTTTATCTCGG................................................................................................................................................................................2012.002.00-------------------------1.00----------------------------1.00----------------------------------------------
...................................................................................................AGACACCAGGGGTGGCCCTGAGCGCCGG...........................................................................................................................2812.002.00--1.00--1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................CAACGCAGTCACCGCCGTCCGCAGTCACAGTCCAG.......................................3512.002.00----------1.00------1.00-----------------------------------------------------------------------------------
......................................................GCCTGGGCCTTTTATCTCGGTG..............................................................................................................................................................................2212.002.00------------1.00-----------1.00----------------------------------------------------------------------------
................................................ATCCCGGCCTGGGCCTTTTATCTCGGTGCTGCCGGG......................................................................................................................................................................3612.002.00----------1.00------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................................CCAGCCACTGACCGCAGCAGCGCCCT.................2612.002.00-------------2.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTCACAGTCCAGCCACTG.................................1812.002.00--2.00--------------------------------------------------------------------------------------------------
.......CCCCCGCTGTAGAAAGGGCCGGGCGAG........................................................................................................................................................................................................................2712.002.00--2.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................AGTCCAGCCACTGACCGCAGCAGCGCCC..................2812.002.00-----------------------------------------2.00-----------------------------------------------------------
..............................................................................................................................................................CTGGGATGGGTAGGGGAGCG........................................................................202.000.001.00--------------------------1.00-------------------------------------------------------------------------
..............................................................................................................GTGGCCCTGAGCGCCGGC..........................................................................................................................1812.002.00---------------------1.00----------1.00--------------------------------------------------------------------
...............GTAGAAAGGGCCGGGCGATT.......................................................................................................................................................................................................................202.000.00---2.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................AACGCAGTCACCGCCGTCCGCAGTCACAGTCCA........................................3312.002.00----------1.00------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................AACGCAGTCACCGCCGTCCGCAGTCACAGTCCAG.......................................3412.002.00----------1.00------1.00-----------------------------------------------------------------------------------
..............................................................................................................GTGGCCCTGAGCGCCGTC..........................................................................................................................182.000.00-----------------------------------------------------------1.00------1.00----------------------------------
.....................................................................CTCGGTGCTGCCGGGGGAGGC................................................................................................................................................................2112.002.00---------------1.00--------------------1.00----------------------------------------------------------------
.....................................................................................................................................CTTTCCTGGACTATAAATTGAGCACCTGG........................................................................................2911.001.00-------1.00---------------------------------------------------------------------------------------------
..........................................................................................................AGGGGTGGCCCTGAGCGCCGGCGAC.......................................................................................................................2511.001.00------------------1.00----------------------------------------------------------------------------------
......................................................................................AGGCGGGAGGAGGAGACAC.................................................................................................................................................1921.001.00------0.50-----------------------------------------------------------------------------------------0.50----
...............................................................................................................................................................TGGGATGGGTAGGGGGCCA........................................................................1911.001.00----------------------------------------------------------1.00------------------------------------------
..........................................................................................................................................................................................ACCGCCGTCCGCAGTCACAG............................................2011.001.00------------------------------------------------------------------------------------1.00----------------
............................................................................................................................................................ACCTGGGATGGGTAGGGGGCCAACGCA...................................................................2711.001.00-------------------------------------------------------------------------------------1.00---------------
...........................................................................................................GGGGTGGCCCTGAGCGCCGGCGACA......................................................................................................................2511.001.00----------------1.00------------------------------------------------------------------------------------
.......................................................................CGGTGCTGCCGGGGGAGGC................................................................................................................................................................1911.001.00---------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................................................CAGCCACTGACCGCAGCAG.......................1911.001.00-------------------1.00---------------------------------------------------------------------------------
..............................................................................................................................................................................................................TCCAGCCACTGACCGCAGCAGCGCCCC.................271.000.001.00----------------------------------------------------------------------------------------------------
.........CCCGCTGTAGAAAGGGCCGG.............................................................................................................................................................................................................................2011.001.00------------------1.00----------------------------------------------------------------------------------
.........................................................................................................CAGGGGTGGCCCTGAGCGC..............................................................................................................................1911.001.00------------------------------------------------1.00----------------------------------------------------
.............................................................................................AGGAGGAGACACCAGGGGTGGCC......................................................................................................................................2311.001.00-------1.00---------------------------------------------------------------------------------------------
.......................................................................................GGCGGGAGGAGGAGACCC.................................................................................................................................................181.000.00--------------------------------------------------------------------1.00--------------------------------
.............................................................CCTTTTATCTCGGTGCTG...........................................................................................................................................................................1811.001.00-----------------------1.00-----------------------------------------------------------------------------
.........CCCGCTGTAGAAAGGGCCGGGC...........................................................................................................................................................................................................................2211.001.00-------------------1.00---------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGACCGCAGCAGCGCCCTTGCGTAGCAGCC.....3011.001.00--------------------------------------------------------------1.00--------------------------------------
............................................................................................GAGGAGGAGACACCAGGGG...........................................................................................................................................1911.001.00---------------------------------------------1.00-------------------------------------------------------
..........................................................GGGCCTTTTATCTCGGTGCT............................................................................................................................................................................2011.001.00----------------------------------------------------------------------------------------1.00------------
.................................GTGTTACTCGCGGTCATCCCGG...................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00-------------------
.................................................................TTATCTCGGTGCTGCCGGGGGAGGCGGG.............................................................................................................................................................2811.001.001.00----------------------------------------------------------------------------------------------------
.................................................................TTATCTCGGTGCTGCCGGGGG....................................................................................................................................................................2111.001.00---------------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................TGGACTATAAATTGAGCACCTGGGATG....................................................................................2711.001.00--------------------------------------------------------------------------1.00--------------------------
.............................................................................................................................................................CCTGGGATGGGTAGGGGGC..........................................................................1911.001.00----------------1.00------------------------------------------------------------------------------------
.........................................................................................CGGGAGGAGGAGACACCAG..............................................................................................................................................1911.001.00--------------------------------------------------------------------------------------1.00--------------
........................................................CTGGGCCTTTTATCTCGGTG..............................................................................................................................................................................2011.001.00---1.00-------------------------------------------------------------------------------------------------
................................................................................................................................GACACCTTTCCTGGACTATAA.....................................................................................................2111.001.00-------1.00---------------------------------------------------------------------------------------------
........................................................................GGTGCTGCCGGGGGAGGCGGG.............................................................................................................................................................2111.001.00------------------------1.00----------------------------------------------------------------------------
.........................................................................................................................................................................................................CACAGTCCAGCCACTGAC...............................1811.001.00-1.00---------------------------------------------------------------------------------------------------
.....................................................GGCCTGGGCCTTTTATCTCGGT...............................................................................................................................................................................2211.001.00--------------1.00--------------------------------------------------------------------------------------
......................................................................................................................................................TTGAGCACCTGGGATGGGTAGGGGGCCAACGC....................................................................3211.001.00-------1.00---------------------------------------------------------------------------------------------
.......................................................................CGGTGCTGCCGGGGGGGA.................................................................................................................................................................181.000.00-------------------------------------------------------------------1.00---------------------------------
..............................................................................GCCGGGGGAGGCGGGAGGAGGAGA....................................................................................................................................................2411.001.00---------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GCGCCCTTGCGTAGCAG.......1711.001.00--------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................ACGCAGTCACCGCCGTCCGC....................................................2011.001.00-----------------------------------------------------------------------------1.00-----------------------
...................................................................................................................................................................................CGCAGTCACCGCCGTCCGC....................................................1911.001.00-----------------------------1.00-----------------------------------------------------------------------
..........................................................................................................................................CTGGACTATAAATTGAGC..............................................................................................1811.001.00--------------------------1.00--------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACTGACCGCAGCAGCG.....................1611.001.00--1.00--------------------------------------------------------------------------------------------------
.........CCCGCTGTAGAAAGGGCCGGGCGAGG.......................................................................................................................................................................................................................261.000.00----------------1.00------------------------------------------------------------------------------------
........CCCCGCTGTAGAAAGGGCCGGGCGAG........................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------1.00-------------------------------
......................................ACTCGCGGTCATCCCGGC..................................................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------------------------------
..........................................................................................................AGGGGTGGCCCTGAGCGCCGGC..........................................................................................................................2211.001.00---------------------------------------------------------------------------------------1.00-------------
............................................................................................................................................GGACTATAAATTGAGCACCT..........................................................................................2011.001.00-----1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................TAAATTGAGCACCTGGGATGGTAG................................................................................241.000.00-------------------------------------------------------------------------1.00---------------------------
...................................................................................................................................................................................................................CCACTGACCGCAGCAGCGCCCTCGCG.............261.000.001.00----------------------------------------------------------------------------------------------------
...................................................................................................AGACACCAGGGGTGGCCCT....................................................................................................................................1911.001.00-----------------------------------------------------------------------1.00-----------------------------
....................................................................................GGAGGCGGGAGGAGGAGACA..................................................................................................................................................2011.001.00-----------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................CCGGCGACACCTTTCCTGGA...........................................................................................................2011.001.00----------------------------------1.00------------------------------------------------------------------
................................................................................................AGGAGACACCAGGGGTGGCC......................................................................................................................................2011.001.00---------------------------------1.00-------------------------------------------------------------------
......................................................................TCGGTGCTGCCGGGGGAGGCGGGAGG..........................................................................................................................................................2611.001.00------------------1.00----------------------------------------------------------------------------------
......................................ACTCGCGGTCATCCC.....................................................................................................................................................................................................1511.001.00-1.00---------------------------------------------------------------------------------------------------
................TAGAAAGGGCCGGGCGAGTGTT....................................................................................................................................................................................................................2211.001.00----------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................................................................GCCGTCCGCAGTCACAGTC..........................................1911.001.00-------------1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................ACGCAGTCACCGCCGTCCGCAGTCA...............................................2511.001.00-----------------------------------------------------------------1.00-----------------------------------
....................................................................................................................................................................TGGGTAGGGGGCCAACGCA...................................................................1911.001.00-------------------------------------1.00---------------------------------------------------------------
.............................................GTCATCCCGGCCTGGGC............................................................................................................................................................................................1711.001.00------------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................CTGGGATGGGTAGGGGGCCAACGCAGTC................................................................2811.001.00-1.00---------------------------------------------------------------------------------------------------
..................................................................................GGGGAGGCGGGAGGAGGAGACACCAGGGG...........................................................................................................................................2911.001.00-1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TCCAGCCACTGACCGCAGCAGCGCCCTCACG.............311.000.00-----------------------------------1.00-----------------------------------------------------------------
........CCCCGCTGTAGAAAGGGCCG..............................................................................................................................................................................................................................2011.001.00---------------------------------------1.00-------------------------------------------------------------
.....................................................................CTCGGTGCTGCCGGGGG....................................................................................................................................................................1711.001.00--------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................................................................................CGCAGTCACAGTCCAGCCACTGACC..............................2511.001.00----------------------------------------------1.00------------------------------------------------------
..................................................................................................................CCCTGAGCGCCGGCGACACC....................................................................................................................2011.001.00----------------------------1.00------------------------------------------------------------------------
........CCCCGCTGTAGAAAGGGCCGGGCGAGTG......................................................................................................................................................................................................................2811.001.00-------------------------------------1.00---------------------------------------------------------------
..........................................................................................................AGGGGTGGCCCTGAGCGC..............................................................................................................................1811.001.00------------1.00----------------------------------------------------------------------------------------
.....................................................................CTCGGTGCTGCCGGGGGAG..................................................................................................................................................................1911.001.00-------1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................ATGGGTAGGGGGCCAACG.....................................................................1811.001.00------------------------1.00----------------------------------------------------------------------------
..................................................CCCGGCCTGGGCCTTTTAT.....................................................................................................................................................................................1911.001.00------------------------------------------------------------1.00----------------------------------------
.....................................................................................GAGGCGGGAGGAGGAGACAC.................................................................................................................................................2011.001.00--------------1.00--------------------------------------------------------------------------------------
.............................................................................................................GGTGGCCCTGAGCGCCGGCGAC.......................................................................................................................2211.001.00---1.00-------------------------------------------------------------------------------------------------
...........................................................................................................GGGGTGGCCCTGAGCGCCGGC..........................................................................................................................2111.001.00------------1.00----------------------------------------------------------------------------------------
.................................................................................................................................................................................................TCCGCAGTCACAGTCCAGC......................................1911.001.00---------------------------------------------------1.00-------------------------------------------------
.............................................................................................................................................................CCTGGGATGGGTAGGGGGCCAACGC....................................................................2511.001.00-----------------------------------------------------------------------------------1.00-----------------
.......................................................................CGGTGCTGCCGGGGGA...................................................................................................................................................................1611.001.00--------------------------------------------1.00--------------------------------------------------------
..............TGTAGAAAGGGCCGGGCGAG........................................................................................................................................................................................................................2011.001.00--------------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................GCAGTCACCGCCGTCCGC....................................................1811.001.00-------------1.00---------------------------------------------------------------------------------------
..........CCGCTGTAGAAAGGGCCGGGCGGGTG......................................................................................................................................................................................................................261.000.00-------------------1.00---------------------------------------------------------------------------------
..........CCGCTGTAGAAAGGGCCGGG............................................................................................................................................................................................................................2011.001.00--------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................AACGCAGTCACCGCCGTCCGCA...................................................2211.001.00----------------------------------------------------1.00------------------------------------------------
.........CCCGCTGTAGAAAGGGCCGGGCG..........................................................................................................................................................................................................................2311.001.00------------------------------------------------------------------------------------------1.00----------
..............................................................................................................................................................................................................TCCAGCCACTGACCGCAGCAGCGCCCTCGCG.............311.000.00-----------------------------------1.00-----------------------------------------------------------------
..........................................................................................................AGGGGTGGCCCTGAGCGCCGG...........................................................................................................................2111.001.00--------------------1.00--------------------------------------------------------------------------------
............................................................................................................................................................ACCTGGGATGGGTAGGGGGCCAACG.....................................................................2511.001.00------------------------------------1.00----------------------------------------------------------------
..CCCCGCCCCCGCTGTAGAAAGGG.................................................................................................................................................................................................................................2311.001.00-1.00---------------------------------------------------------------------------------------------------
................................................................................CGGGGGAGGCGGGAGGAAA.......................................................................................................................................................191.000.00-------------------------------------------------------1.00---------------------------------------------
.........................................................................GTGCTGCCGGGGGAGGCGGGAGGAGGAGACA..................................................................................................................................................3111.001.00-------------------------------------------1.00---------------------------------------------------------
.........CCCGCTGTAGAAAGGGCC...............................................................................................................................................................................................................................1811.001.00--1.00--------------------------------------------------------------------------------------------------
.........CCCGCTGTAGAAAGGGCCGGGCGAGTG......................................................................................................................................................................................................................2711.001.00-------------------------------------------------------------------------------1.00---------------------
......................................................................................................................................................................................................AGTCACAGTCCAGCCACTGACC..............................2211.001.00------------------------------------------1.00----------------------------------------------------------
.............................................................................TGCCGGGGGAGGCGGGAGGGAGA......................................................................................................................................................231.000.001.00----------------------------------------------------------------------------------------------------
...........CGCTGTAGAAAGGGCCGGGCGAGTGT.....................................................................................................................................................................................................................2611.001.00-----1.00-----------------------------------------------------------------------------------------------
....................................................................TCTCGGTGCTGCCGGGGGAGGC................................................................................................................................................................2211.001.00------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................................................CAGTCACCGCCGTCCGCAGT.................................................2011.001.00---1.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................................GCACCTGGGATGGGTAGGGGGC..........................................................................2211.001.00-----1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................ACTGACCGCAGCAGCGC....................1711.001.00-1.00---------------------------------------------------------------------------------------------------
............................................................................................................................................................................GGGCCAACGCAGTCACCG............................................................1811.001.00---------------------1.00-------------------------------------------------------------------------------
............................................................................................................................................................ACCTGGGATGGGTAGGGGGCCAACGC....................................................................2611.001.00--------------------1.00--------------------------------------------------------------------------------
.................................................................................................................................................................................AACGCAGTCACCGCCGTCCGCAGTC................................................2511.001.00---------------------------------------1.00-------------------------------------------------------------
.............................................................................................AGGAGGAGACACCAGGGGTGG........................................................................................................................................2111.001.00-------------------------------------------------1.00---------------------------------------------------
.....................................................................................GAGGCGGGAGGAGGAGAGGC.................................................................................................................................................2020.500.50-----------------------------------------------------------------------------------------------0.50-----
..............................................................................................................................................................................................................TCCAGCCACTGACCGC............................1620.500.50--0.50--------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGATGGGTAGGGGGC..........................................................................1720.500.50-0.50---------------------------------------------------------------------------------------------------
.........CCCGCTGTAGAAAGGGC................................................................................................................................................................................................................................1720.500.50-0.50---------------------------------------------------------------------------------------------------
.....................................................................................GAGGCGGGAGGAGGAGA....................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------0.50---
...........................................................................................................................................TGGACTATAAATTGAGCA.............................................................................................1820.500.50----------------------------------------------------------------------------------------------0.50------
...................................................................................GGGAGGCGGGAGGAGGAGA....................................................................................................................................................1920.500.50------------------------------0.50----------------------------------------------------------------------
...............................................................................CCGGGGGAGGCGGGAGGAG........................................................................................................................................................1920.500.50------------------------------0.50----------------------------------------------------------------------
......................................................................................AGGCGGGAGGAGGAGAC...................................................................................................................................................1740.250.25--------------------------------------------------------------------------------------------------0.25--
....................................................CGGCCTGGGCCTTTT.......................................................................................................................................................................................1570.140.14----------------------------------------------------------------------------------------------------0.14

Antisense strand
CGCCCCGCCCCCGCTGTAGAAAGGGCCGGGCGAGTGTTACTCGCGGTCATCCCGGCCTGGGCCTTTTATCTCGGTGCTGCCGGGGGAGGCGGGAGGAGGAGACACCAGGGGTGGCCCTGAGCGCCGGCGACACCTTTCCTGGACTATAAATTGAGCACCTGGGATGGGTAGGGGGCCAACGCAGTCACCGCCGTCCGCAGTCACAGTCCAGCCACTGACCGCAGCAGCGCCCTTGCGTAGCAGCCGCTTG
...............................................................................................................(((((((..((....))...((((.((((((................)))))).))))..)))))))........................................................................
.........................................................................................................106.........................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189783SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR029130(GSM416759)
DLD2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040039(GSM532924)
G531T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................................................................................................................................................................CGGCTGCTACGCAAGGGCG.... 1912.002.00----------------------------------------2.00------------------------------------------------------------
...............CACTCGCCCGGCCCTTTCTAC...................................................................................................................................................................................................................... 2112.002.00--------2.00--------------------------------------------------------------------------------------------
..............................................................................................................................................................................................CTGGACTGTGACTGCGGACGG....................................... 2112.002.00----------------------------1.00---------------------------------------------------1.00--------------------
........................................................................................................................................................................................TGGACTGTGACTGCGGACGGCGGTGA........................................ 2611.001.00---------------------------------------------------------------1.00-------------------------------------
....................................................................................................................................................................................................................................AGCGGCTGCTACGCAAGGGC.. 2011.001.00----------------------------------------------------------------------------------1.00------------------
.............................................................................................................................................................................................ACTGTGACTGCGGACGGC........................................... 1811.001.00------------1.00----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................TACGCAAGGGCGCTG........... 1511.001.00-----------------------------------------------------1.00-----------------------------------------------
................CACTCGCCCGGCCCTTTCTA...................................................................................................................................................................................................................... 2011.001.00--------1.00--------------------------------------------------------------------------------------------
................TAGAAAGGGCCGGGCGAGTGT..................................................................................................................................................................................................................... 211.000.00--------1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................CAAGCGGCTGCTACGCAAGGGC 2211.001.00------------------------------------------------------------------------------1.00----------------------
.................AGAAAGGGCCGGGCGAGTGGC.................................................................................................................................................................................................................... 211.000.00--------1.00--------------------------------------------------------------------------------------------
...........................................................................GCTGCCGGGGGAGGCGCAC............................................................................................................................................................ 191.000.00-----------1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GTGGCTGGACTGTGACTG................................... 1811.001.00--1.00--------------------------------------------------------------------------------------------------
...............................................................................CCGGGGGAGGCGGGAGGAG........................................................................................................................................................ 191.000.00----------------------------------------------------------------------------1.00------------------------
......................................................................................................................................................................................GCTGGACTGTGACTGCGGACGGCGGTGACT...................................... 3011.001.00--------------------------------------------------------1.00--------------------------------------------
.................................................................................................................................................................................................CTGGACTGTGACTGCGGA....................................... 1811.001.00-----------------------1.00-----------------------------------------------------------------------------
..................................................................................................................................TAGTCCAGGAAAGGTG........................................................................................................ 1620.500.50-0.50---------------------------------------------------------------------------------------------------
..................................................................................................................................ATAGTCCAGGAAAGGTG....................................................................................................... 1720.500.50--0.50--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TGGCTGGACTGTGACTG.................................... 1730.330.33--0.33--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GGCTGGACTGTGACTG..................................... 1650.200.20---------------------------------------------------------------------------------------------------0.20-