ID: uc004def.3_intron_2_0_chrX_38229131_f.3p
GENE: (3)
chrX:38240395-38240644+


(2)
BREAST 		(11)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HELA 		(4)
LIVER 		(3)
SKIN

Sense strand
AGAGTTAATTACTTGAGCACAAAATTTTATCTACTTCCCTCAATTCCTCATTTTGCTTTGCATGGGAATTCTGTATCAGAGAAGTTGGAGAGCTTTAAAGATTTTGACTTTTCAGTTGAGATGATGCCAATTCTTTGTAATTTTGTTTTCCACTTTAGTTGTTTTTTCAAAATGATTTTTTTCTTTTTTTTTTATTGTAGGCTTTGCACTTCTGGGAGGACATCCTTGTTTTCTTACCACACAAGATATT
.............................................................................(((((((.((((((((.......((((..(((....)))..)))).....(((....))).......))))))))....(((..(((.....)))..)))..)))))))................................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATG......................................................229.000.00-5.00-2.00--2.00---------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTACG......................................................203.000.00----3.00-----------------
..................................................................................AGTTGGAGAGCTTTAGA.......................................................................................................................................................172.000.00-------------1.00----1.00---
................................................................................................................................................................................TTTTTTCTTTTTTTTTTATTGGTGT.................................................252.000.002.00---------------------
...........................................................................................................................................................................ATGATTTTTTTCTTTTTTTTGTAG.......................................................242.000.002.00---------------------
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTTTGTAG.....................................................252.000.002.00---------------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTTATG..................................................251.000.00---1.00------------------
......................................................................................................................................................................................................AGGCTTTGCACTTCTGGGAGGACATA..........................261.000.00-------------------1.00--
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATGAGG...................................................251.000.00--1.00-------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTATTCTG...................................................231.000.00-1.00--------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTACCAG....................................................211.000.00---1.00------------------
.............................................................................AGAGAAGTTGGAGAGGCA...........................................................................................................................................................181.000.00-------1.00--------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATTTTTT..................................................261.000.001.00---------------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTACGGG....................................................241.000.00--1.00-------------------
.........................................................................................................................................................................AAATGATTTTTTTCTTTTGCAG...........................................................221.000.001.00---------------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTATTTAG...................................................231.000.00------1.00---------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTTTAT..................................................251.000.00---1.00------------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATTTTT...................................................251.000.001.00---------------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATAAC....................................................241.000.00-----1.00----------------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTATTGTTTAG................................................261.000.001.00---------------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTTCTG..................................................251.000.00-1.00--------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTACACA....................................................211.000.00-----1.00----------------
..........................................................................................................................................................................AATGATTTTTTTCTTTTTTTTACC........................................................241.000.00--1.00-------------------
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTTCTGG......................................................241.000.001.00---------------------
.....................................................................TCTGTATCAGAGAAGGCTG..................................................................................................................................................................191.000.00-----------1.00----------
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTAGAG.......................................................231.000.00--1.00-------------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATTTCTG..................................................261.000.00----1.00-----------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATACG....................................................231.000.00-1.00--------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTATTGTTGAC................................................241.000.001.00---------------------
.................................................................................................................................................................................TTTTTCTTTTTTTTTTACG......................................................191.000.00-----1.00----------------
...........................................................................................................................................................................ATGATTTTTTTCTTTTTTTTTTGAG......................................................251.000.001.00---------------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTTTA...................................................241.000.00----1.00-----------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTGG....................................................231.000.00--1.00-------------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTTCAG..................................................251.000.001.00---------------------
......................................................................................................................................................................................................AGGCTTTGCACTTCTGGGAGGACATC..........................2611.001.00--------------1.00-------
.............................................................................................................................................................................GATTTTTTTCTTTTTTTTTTACT......................................................231.000.001.00---------------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTATTAATT..................................................261.000.00-----1.00----------------
..................................................................................AGTTGGAGAGCTTTAGACT.....................................................................................................................................................191.000.00---------1.00------------
.............................................................................AGAGAAGTTGGAGAGCG............................................................................................................................................................171.000.00------------1.00---------
................................................................................................................................................................................TTTTTTCTTTTTTTTTTATTCCTT..................................................241.000.001.00---------------------
...........................................................................................................................................................................ATGATTTTTTTCTTTTTTTTTTGG.......................................................241.000.00--1.00-------------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTATTCCG...................................................211.000.00------1.00---------------
..................................................................................................................................................................................TTTTCTTTTTTTTTTATTCAAG..................................................221.000.00-1.00--------------------
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTCTGG.......................................................231.000.001.00---------------------
..............................................................................................................................................................................ATTTTTTTCTTTTTTTTTTACAG.....................................................231.000.001.00---------------------
........................................................................................................................................................................................TTTTTTTTTATTGTAGGAGA..............................................201.000.00--------------------1.00-
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTTTGG.......................................................231.000.001.00---------------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATAAG....................................................231.000.00---1.00------------------
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTTGGAG......................................................241.000.001.00---------------------
............................................................................................................................................................................TGATTTTTTTCTTTTTTTTTTGGAG.....................................................251.000.00--1.00-------------------
...............................................................................................................................................................................TTTTTTTCTTTTTTTTTTATTGT....................................................2320.500.50-----0.50----------------
......................................................................................................................................................CACTTTAGTTGTTTTTT...................................................................................1720.500.50--0.50-------------------
...............................................................................AGAAGTTGGAGAGCTT...........................................................................................................................................................1670.290.29---------------------0.29

Antisense strand
AGAGTTAATTACTTGAGCACAAAATTTTATCTACTTCCCTCAATTCCTCATTTTGCTTTGCATGGGAATTCTGTATCAGAGAAGTTGGAGAGCTTTAAAGATTTTGACTTTTCAGTTGAGATGATGCCAATTCTTTGTAATTTTGTTTTCCACTTTAGTTGTTTTTTCAAAATGATTTTTTTCTTTTTTTTTTATTGTAGGCTTTGCACTTCTGGGAGGACATCCTTGTTTTCTTACCACACAAGATATT
.............................................................................(((((((.((((((((.......((((..(((....)))..)))).....(((....))).......))))))))....(((..(((.....)))..)))..)))))))................................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
.............................................................................................................................................................................GATTTTTTTCTTTTTTTTTGAA....................................................... 221.000.00-----------------1.00----
.....................................................................TCTGTATCAGAGAAGCTG................................................................................................................................................................... 181.000.00----------------1.00-----
.................................CTTCCCTCAATTCCTGGG....................................................................................................................................................................................................... 181.000.00-------1.00--------------
................................ACTTCCCTCAATTCCTCG........................................................................................................................................................................................................ 181.000.00----------1.00-----------
.......................................................................................................................................................ACTTTAGTTGTTTTTAATT................................................................................ 191.000.00---------------1.00------
.................................CTTCCCTCAATTCCTGGAA...................................................................................................................................................................................................... 191.000.00--------1.00-------------
.................................CTTCCCTCAATTCCTAGA....................................................................................................................................................................................................... 181.000.00-------1.00--------------
.................................CTTCCCTCAATTCCTGGTA...................................................................................................................................................................................................... 191.000.00--------1.00-------------