ID: uc004dch.3_intron_0_0_chrX_30671733_f.3p
GENE: (1)
chrX:30683428-30683677+


(1)
AGO1.ip OTHER.mut
(3)
BREAST
(6)
CELL-LINE
(3)
CERVIX
(8)
HEART
(1)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(17)
SKIN
(1)
TESTES

Sense strand
TTTACCTAAAGAGAAGTTATTTCTGATGCTGCCTTATATCTTTTATGAATCCATATGAAAAGAAAGTGGAACATCTTATATGGCATTTCATCTAATTGGACTTTTTCTACCAGTGAACAAGAACTTCAGTTACTGAATAACTTTAAACATCCTTGATATCTGCCTGCATTTTTACATTAATATTACAATATCTTTTTCAGGTTTTCAATTCAAAAACAGCTGAACTACTTAGTCATCATCAAGTAGAAAT
.................................................................................((((.((((..(((((((((((.(((.......))).)))...)))))))).))))..........((....)).....))))......................................................................................
.......................................................56..........................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM532882(GSM532882)
G696T. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
.............................................................................................................................................TTTAAACATCCTTGACTGG..........................................................................................19198.000.0077.0040.0013.007.007.006.005.003.001.003.003.003.003.003.00-1.002.001.00-2.002.001.002.00-1.001.001.00--1.00--1.00--1.001.00--1.001.001.001.00-1.001.00----
.............................................................................................................................................TTTAAACATCCTTGACTGT..........................................................................................195.000.001.001.001.001.00-----------1.00----------------------------------
.............................................................................................................................................TTTAAACATCCTTGACTTG..........................................................................................195.000.00--4.00-------------------------1.00---------------------
.............................................................................................................................................TTTAAACATCCTTGACTG...........................................................................................184.000.00--1.00---------------1.00------------1.00-----------1.00------
.............................................................................................................................................TTTAAACATCCTTGACTGA..........................................................................................192.000.001.00--------------------1.00----------------------------
.............................................................................................................................................TTTAAACATCCTTGACTTT..........................................................................................192.000.00--2.00-----------------------------------------------
.............................................................................................................................................TTTAAACATCCTTGACTT...........................................................................................181.000.00------------------------------------------------1.00-
............................................................AGAAAGTGGAACATCTTATATGGCA.....................................................................................................................................................................2511.001.00--------1.00-----------------------------------------
...............................................................AAGTGGAACATCTTAAAAA........................................................................................................................................................................191.000.00--------------1.00-----------------------------------
......................................................................................................................................................................CATTTTTACATTAATATTACAATATCTTTTTCAT..................................................341.000.00----------------------------------------------1.00---
.............................................................................................................................................TTTAAACATCCTTGAAGCT..........................................................................................191.000.00--------------1.00-----------------------------------
.............................................................................................................................................................................................ATCTTTTTCAGGTTTTGGA..........................................191.000.00-----------------------1.00--------------------------
.............................TGCCTTATATCTTTTTCAT..........................................................................................................................................................................................................191.000.00-------1.00------------------------------------------
.......................................................................CATCTTATATGGCATTTCATCT.............................................................................................................................................................2211.001.00--------1.00-----------------------------------------
............................................................................TATATGGCATTTCATCTAATTG........................................................................................................................................................2211.001.00--------1.00-----------------------------------------
.....................................ATCTTTTATGAATCCATA...................................................................................................................................................................................................1811.001.00------------------1.00-------------------------------
....................................................................................................................................................................................................................AAAACAGCTGAACTACTTAGTCAT..............2420.500.50-------------------------------------------------0.50
.....................................................................................................................................................................................................................................TAGTCATCATCAAGTAGAAA.2020.500.50------------------------0.50-------------------------
..................................................................................................................................................................................................................CAAAAACAGCTGAACTACTTAG..................2220.500.50--------------0.50-----------------------------------

Antisense strand
TTTACCTAAAGAGAAGTTATTTCTGATGCTGCCTTATATCTTTTATGAATCCATATGAAAAGAAAGTGGAACATCTTATATGGCATTTCATCTAATTGGACTTTTTCTACCAGTGAACAAGAACTTCAGTTACTGAATAACTTTAAACATCCTTGATATCTGCCTGCATTTTTACATTAATATTACAATATCTTTTTCAGGTTTTCAATTCAAAAACAGCTGAACTACTTAGTCATCATCAAGTAGAAAT
.................................................................................((((.((((..(((((((((((.(((.......))).)))...)))))))).))))..........((....)).....))))......................................................................................
.......................................................56..........................................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormSRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189787SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM532882(GSM532882)
G696T. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
...................TTTCTGATGCTGCCTCTG..................................................................................................................................................................................................................... 181.000.00-----------------------------------------------1.00--
..............................................................................................ATTGGACTTTTTCTAACAG......................................................................................................................................... 191.000.00---------------------------1.00----------------------
......................................................................................................................................................................................................AGGTTTTCAATTCAAATTCA................................ 201.000.00----------------------------------1.00---------------
.....................................................................................................................................................................................................................AAACAGCTGAACTACGGT................... 181.000.00-------------------------------------1.00------------
................................................................................................................................................................................................TTTTTCAGGTTTTCAATTAA...................................... 201.000.00------------------------------1.00-------------------
................................................................................................................................................................TGCCTGCATTTTTACATAAC...................................................................... 201.000.00---------------------------------1.00----------------
..................................................................................................................................................................................................................................ACTTAGTCATCATCAATCCG.... 201.000.00-----------------1.00--------------------------------
........................................................GAAAAGAAAGTGGAAGAGA............................................................................................................................................................................... 191.000.00--------------------------------------1.00-----------
........................................................GAAAAGAAAGTGGAAGCTT............................................................................................................................................................................... 191.000.00-----------------------1.00--------------------------
................................................................................................GGTAGAAAAAGTCCA........................................................................................................................................... 1560.170.17-------------------------0.17------------------------