ID: uc004dbw.2_intron_0_0_chrX_27826154_f.3p
GENE: (1)
chrX:27835471-27835720+


(1)
AGO2.ip
(15)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
LIVER
(1)
OTHER
(4)
SKIN

Sense strand
CGCTTCCTTACTATGTCCCTCCAAAATTCAATACCTCCTCATATGTAACCACATTTTTTAAATCCTGCATGTAGTATTTTTAAATGTATTATAGGCTTTCTCTTATATACATGTGCAACAAAAATACACTGTGAGGGTTTTTTTGCTTTTGTTTGCTCCTTTTTCTTCTTAATTTTTATTTACTTATTTATTTCTTTTAGAGACGGTGCCTCGCTCTGTTGCCCAGACTGGAGTGCAGTGGTGTGATCAT
....................................................................................................................................(((((.......((........)).......)))))..................................................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189785SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
.............................................................................................................................................................................TTTTATTTACTTATTTATTTCAGAG....................................................252.000.002.00---------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTAC....................................................................................................172.000.002.00---------------------------
..................................................................................................................................................................................................................................ACTGGAGTGCAGTGGTGTGATCCGGC262.000.00-2.00--------------------------
................................................................................................................................................................................TATTTACTTATTTATTTCTTCAG...................................................232.000.00--1.001.00------------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTATTTTAC......................................................252.000.002.00---------------------------
......................................................................................................................CAAAAATACACTGTGAAAG.................................................................................................................192.000.00-----1.00-1.00--------------------
.......................................................................................................................................................................CTTAATTTTTATTTACTTATTTATTTTTG......................................................292.000.00---1.00----1.00-------------------
...........................................................................................................................................................................................................................TGCCCAGACTGGAGTGCAGTGAAA.......242.000.00-----------2.00----------------
......................................................................................................................................................................................CTTATTTATTTCTTTTATAG................................................201.000.00---1.00------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTGCTT..................................................................................................191.000.001.00---------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTCCT...................................................................................................181.000.001.00---------------------------
..............................................AACCACATTTTTTAAACGA.........................................................................................................................................................................................191.000.00----------------------1.00-----
......................................................................................................................................................................TCTTAATTTTTATTTACTTATTTATTCATG......................................................301.000.00--1.00-------------------------
...............................................................................................................................................................................TTATTTACTTATTTATTTCATCT....................................................231.000.00--------1.00-------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTATTTTCTG.....................................................261.000.00--1.00-------------------------
..................................................................................................................................................................................TTTACTTATTTATTTCTTTTTG..................................................221.000.00---1.00------------------------
...................................................................................................................................................................TCTTCTTAATTTTTATTTTTG..................................................................211.000.00-------------------------1.00--
.....................................................................................................................................................................TTCTTAATTTTTATTTACTTATTTATTTAG.......................................................301.000.00--1.00-------------------------
...........................................................................................................................................................................................................................TGCCCAGACTGGAGTGCCGCG..........211.000.001.00---------------------------
...........................................................................................................................................TTTTTGCTTTTGTTTGGACG...........................................................................................201.000.00-1.00--------------------------
................................................................................................................................................................................................................................AGACTGGAGTGCAGTGGTGTGGCT..241.000.00-1.00--------------------------
......................................................................................................................................................................................................................TCTGTTGCCCAGACTGGCGC................201.000.00-1.00--------------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTATTTCTTTATTG.................................................301.000.00------1.00---------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTATTTGGA......................................................251.000.00-1.00--------------------------
...................................................................................................................................................................................TTACTTATTTATTTCTTTTTTTT................................................231.000.00------1.00---------------------
.........................................................................................................................................................................TAATTTTTATTTACTTACAG.............................................................201.000.00---1.00------------------------
...............................................................................................................................................................................TTATTTACTTATTTATTTCTTAAG...................................................241.000.00--1.00-------------------------
..............................................................................................................................................................................................................................CCAGACTGGAGTGCAGAGCG........201.000.00------------------------1.00---
............................................................................................................................................................TCCTTTTTCTTCTTAAATG...........................................................................191.000.00--1.00-------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTGTC...................................................................................................181.000.001.00---------------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTATCA..........................................................211.000.00--------1.00-------------------
..................................................................................................................................................................................................................................ACTGGAGTGCAGTGGTGTGATCGGCT261.000.001.00---------------------------
........................................................................................................................................................................TTAATTTTTATTTACTTATTTTAG..........................................................241.000.00--1.00-------------------------
......................................................................................................................................................................................................................TCTGTTGCCCAGACTGGAGTGCAGTGCGC.......291.000.001.00---------------------------
........................................................................................................................................................................................................................TGTTGCCCAGACTGGAGTGCAGTTTCC.......271.000.001.00---------------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTGAG..........................................................211.000.001.00---------------------------
...........................................................................................................................................................................................................................TGCCCAGACTGGAGTGCAGTGGTGGCA....271.000.00-------------1.00--------------
........................................................................................................................................................................................................................TGTTGCCCAGACTGGAGTGCTCTG..........241.000.00------------------1.00---------
..................................................................................................................................................................................TTTACTTATTTATTTCTTTTGGAG................................................241.000.00-1.00--------------------------
.....................................................TTTTTTAAATCCTGCACTTT.................................................................................................................................................................................201.000.00-----1.00----------------------
.....................................................................................................................................AGGGTTTTTTTGCTTTTGTTTTC..............................................................................................231.000.00-1.00--------------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTATTTTTTC.....................................................261.000.00-1.00--------------------------
.................................................................................................................................................................................ATTTACTTATTTATTTCTTG.....................................................201.000.00---1.00------------------------
....................................................................................................................................................................................TACTTATTTATTTCTTTTTTG.................................................211.000.00--1.00-------------------------
..............................................................................................................................................................CTTTTTCTTCTTAATTTTATT.......................................................................211.000.00------1.00---------------------
...........................................................................................................................................................................ATTTTTATTTACTTATTTGGAC.........................................................221.000.001.00---------------------------
........................................................................................................................................................................................................................TGTTGCCCAGACTGGAGTGCAGTGGT........2601.001.00-------------------1.00--------
...............................................ACCACATTTTTTAAATTTG........................................................................................................................................................................................191.000.00-----1.00----------------------
...........................................................................................................................................................................................................................TGCCCAGACTGGAGTGCAGTGAAAA......251.000.00--------------------1.00-------
..............................................................................................................................................................................................TTTCTTTTAGAGACGGAGCA........................................201.000.00-1.00--------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTTTC...................................................................................................181.000.001.00---------------------------
...........................................................................................................................................................................................................................TGCCCAGACTGGAGTGCAGTGGGGCT.....261.000.001.00---------------------------
............................................................................................................................................TTTTGCTTTTGTTTGCCCT...........................................................................................191.000.00---------------1.00------------
....................................................................................................................................................................CTTCTTAATTTTTATAACA...................................................................191.000.00-------1.00--------------------
.....................................................................................................................................AGGGTTTTTTTGCTTGCC...................................................................................................181.000.001.00---------------------------
.................................................................................................................................................................................ATTTACTTATTTATTTCTTCAG...................................................221.000.00---1.00------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTGC....................................................................................................171.000.001.00---------------------------
..............................................................................................................................................................................TTTATTTACTTATTTATTTCTTTTTAG.................................................271.000.00---1.00------------------------
.............................................................................................................................................................................TTTTATTTACTTATTTATTGATT......................................................231.000.001.00---------------------------
.............................................................................................................................................................................TTTTATTTACTTATTTATTTCG.......................................................221.000.00--1.00-------------------------
.....................................................................................................................................AGGGTTTTTTTGCTTTTGTTTTCC.............................................................................................241.000.001.00---------------------------
..........................................................................................................................................................................................................................TTGCCCAGACTGGAGTGCAGAAG.........231.000.00----------1.00-----------------
..................................................................................................................................................................................................................................ACTGGAGTGCAGTGGTGT......1801.001.00---------------------------1.00
.................................................................................................................................................................................ATTTACTTATTTATTTCTCG.....................................................201.000.00--1.00-------------------------
................................................................................................................................................................................................................................AGACTGGAGTGCAGTGGTGGAGC...231.000.00-1.00--------------------------

Antisense strand
CGCTTCCTTACTATGTCCCTCCAAAATTCAATACCTCCTCATATGTAACCACATTTTTTAAATCCTGCATGTAGTATTTTTAAATGTATTATAGGCTTTCTCTTATATACATGTGCAACAAAAATACACTGTGAGGGTTTTTTTGCTTTTGTTTGCTCCTTTTTCTTCTTAATTTTTATTTACTTATTTATTTCTTTTAGAGACGGTGCCTCGCTCTGTTGCCCAGACTGGAGTGCAGTGGTGTGATCAT
....................................................................................................................................(((((.......((........)).......)))))..................................................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189785SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR189783DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR343335SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
...........................................................................................................................................................CTCCTTTTTCTTCTTTCAA............................................................................ 192.000.00---------2.00------------------
....................................................................ATGTAGTATTTTTAAATCTC.................................................................................................................................................................. 202.000.00----2.00-----------------------
.........................................................................................................................................TTTTTTTGCTTTTGTTTTT.............................................................................................. 192.000.00------------2.00---------------
....................................................................ATGTAGTATTTTTAAATTTG.................................................................................................................................................................. 201.000.00----------------1.00-----------
....................................................................................................................................................................................................................GCTCTGTTGCCCAGACTGGATCTG.............. 241.000.00--------------------------1.00-
...............................................................................................................................................................................................................................CAGACTGGAGTGCAGTGGTGTCGAC.. 251.000.001.00---------------------------
....................................................................ATGTAGTATTTTTAAATTTT.................................................................................................................................................................. 201.000.00----1.00-----------------------
....................................................................ATGTAGTATTTTTAAATCAT.................................................................................................................................................................. 201.000.00----1.00-----------------------
............................................................................................................................................................................................................ACTCCAGTCTGGGCAACAGAGCGAGGCACC................ 3011.001.00-1.00--------------------------
....................................................................ATGTAGTATTTTTAAATTTC.................................................................................................................................................................. 201.000.00----1.00-----------------------
...............................................................................................................................................................................................................GCCTCGCTCTGTTGCCCAGACTGTC.................. 251.000.00-1.00--------------------------
....................................................................ATGTAGTATTTTTAAATCTG.................................................................................................................................................................. 201.000.00----1.00-----------------------
.................................................................................................................................................................................................................CTCGCTCTGTTGCCCAC........................ 171.000.00-----------------1.00----------
....................................................................................................................................................................................................................GCTCTGTTGCCCAGACTGGAGTCTG............. 251.000.00--------------1.00-------------
......................................................................................................................................................................................................AGAGACGGTGCCTCGCTTA................................. 191.000.00----------1.00-----------------
.....................................................................................................................................................................................................................CTCTGTTGCCCAGACTGGAGTGCAGTGGGGCG..... 321.000.001.00---------------------------
........................................................................................................................................................................................................................TGTTGCCCAGACTGGAGTGTAG............ 221.000.00---------------------1.00------
.................................................................................................................................................................................................................CTCGCTCTGTTGCCCAGATTG.................... 211.000.001.00---------------------------
.....................................................................TGTAGTATTTTTAAAAAAG.................................................................................................................................................................. 191.000.00-----1.00----------------------
....................................................................................................................................................................................................................GCTCTGTTGCCCAGACTGGAGTGCTCTG.......... 281.000.00-----------------------1.00----
.................................................................................................................................................................................................................................GACTGGAGTGCAGTGGTGGGC.... 211.000.001.00---------------------------
....................................................................ATGTAGTATTTTTAAATTAT.................................................................................................................................................................. 201.000.00-------1.00--------------------
.GGGACATAGTAAGGAAGC....................................................................................................................................................................................................................................... 1820.500.50-------------0.50--------------