ID: uc004dan.2_intron_4_0_chrX_23723976_r.5p
GENE: (1)
chrX:23724545-23724794-


(1)
AGO1.ip 		(4)
AGO2.ip 		(5)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(26)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(6)
LIVER 		(2)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
GAGGAGAGGACCACCATACATGAGATGTTTCTCAGCACACTGGATCCAAAGTAAGGATGGTGAGATTCCACGTTGGGAAAACATTTAAACCTTGGCCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTTACCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGAGTAGCTGGGATTATAGGCATGC
.........................................................................................((..(((((...........((((......)))).((((.....))))........))))))).((((....)))).....................................................................................
......................................................................................87................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189785SRR390723(GSM850202)
total small RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		GSM956925PAZD5GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
...........................................................................................TTGGCCTTTTTTTTTTTTTTTGGTC......................................................................................................................................254.000.004.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTGGTC.....................................................................................................................................264.000.004.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTGGTC...................................................................................................................................273.000.003.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTGGTC....................................................................................................................................273.000.003.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTCTGG....................................................................................................................................262.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCAGC...............................................................................................................................312.000.00-2.00--------------------------------------------------
............................................................................................................................................TACCCAGGCTGGAGTGCAATGAAGA.....................................................................................2502.001.00------------------2.00---------------------------------
..................................................................................................................................................................CACGATCTTGGCTCACTGCATAA.................................................................232.000.00---------------2.00------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTGGTC...................................................................................................................................282.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTGGTC......................................................................................................................................242.000.002.00---------------------------------------------------
....................................................................................................................................................................................................................................GTAGCTGGGATTATAGGCATG.2102.002.00-----------2.00----------------------------------------
......................................................................................................................................................................ATCTTGGCTCACTGCAACCTCTGCCTAGGC......................................................302.000.002.00---------------------------------------------------
.................................................................................................................TTTTTTGAGACGGAGTTTAGA....................................................................................................................212.000.00-------------------2.00--------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTGGGG....................................................................................................................................262.000.002.00---------------------------------------------------
.........................................................................................................................................................................TTGGCTCACTGCAACCTCTGCCTCCCGGGCCC.................................................322.000.001.001.00--------------------------------------------------
.....................................................................................................................................................................................................................TGCCTCAGCCTCCGAGTAGCTCGG.............242.000.001.001.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTAGC...................................................................................................................................272.000.001.001.00--------------------------------------------------
.....................................................................................................................................................................................................................TGCCTCAGCCTCCGAGTAGCTCGC.............242.000.002.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTCT...................................................................................................................................282.000.001.001.00--------------------------------------------------
.........................................................................................................................................TGTTACCCAGGCTGGAGTGCAAAAA........................................................................................252.000.00--------------------------------1.00--1.00----------------
............................................................................................TGGCCTTTTTTTTTTTAGC...........................................................................................................................................192.000.001.001.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTGG.....................................................................................................................................262.000.00-2.00--------------------------------------------------
..........................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTCCCGGGGC..................................................302.000.001.001.00--------------------------------------------------
...........................................................................................................................................TTACCCAGGCTGGAGTGCAAGGCG.......................................................................................242.000.00-2.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCTC................................................................................................................................302.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCGA....................................................................................................................................262.000.002.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTAAC........................................................................................................................................232.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTGGTC....................................................................................................................................262.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTCGC...................................................................................................................................272.000.001.001.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCTC....................................................................................................................................262.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCAG................................................................................................................................302.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTGGCC...................................................................................................................................272.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCTGG...............................................................................................................................312.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTCAGC..................................................................................................................................282.000.002.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTCGAG.......................................................................................................................................232.000.002.00---------------------------------------------------
..................................................................................................................................................................................................................TCCTGCCTCAGCCTCCGAGTAGCCAGG.............272.000.002.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTGGGC......................................................................................................................................252.000.002.00---------------------------------------------------
............................................................................................................................................TACCCAGGCTGGAGTGCAATGG........................................................................................2201.001.00-----1.00----------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTACG........................................................................................................................................221.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTCGAG....................................................................................................................................261.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTGGCC....................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCCCG...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTATTT...............................................................................................................................311.000.001.00---------------------------------------------------
..........................................................................................CTTGGCCTTTTTTTTTTTTTTTTTTTGAA...................................................................................................................................291.000.00-1.00--------------------------------------------------
...............................................................................................CCTTTTTTTTTTTTTTTTTTTTTTGTTAG..............................................................................................................................291.000.00---1.00------------------------------------------------
.........................................................................................................................................................................................................................TCAGCCTCCGAGTAGCTGGGATTATAGGCACC.321.000.001.00---------------------------------------------------
...................................................................................................................................................................................GCAACCTCTGCCTCCCGGGTTCT................................................231.000.00---------------------------------------------1.00------
............................................................................................TGGCCTTTTTTTTTTGGAC...........................................................................................................................................191.000.001.00---------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTAGCGGGG.............301.000.001.00---------------------------------------------------
..........................................................................................................................................................................................CTGCCTCCCGGGTTCAATTAT...........................................211.000.00-------1.00--------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTGGG.................................................................................................................................291.000.001.00---------------------------------------------------
..............................................................................................GCCTTTTTTTTTTTTTTTTTTTTTCGGG................................................................................................................................281.000.001.00---------------------------------------------------
..............................................................................................GCCTTTTTTTTTTTTTTTTTTTTTCTGC................................................................................................................................281.000.00-1.00--------------------------------------------------
...........................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCCGTC..................................291.000.00-1.00--------------------------------------------------
......................................................................................................................................................................ATCTTGGCTCACTGCAACCTCTGCCTAGGT......................................................301.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTGCC..................................................................................................................................281.000.001.00---------------------------------------------------
..................................................................................................................................................................................................................................GAGTAGCTGGGATTATAGGCAGGGG251.000.00------------------------------------------------1.00---
...........................................................................................TTGGCCTTTTTTTTTTTTTTCCTT.......................................................................................................................................241.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTCTTG...............................................................................................................................321.000.001.00---------------------------------------------------
.........................................................................................................................................TGTTACCCAGGCTGGAGTGCATTTA........................................................................................251.000.00---------------------------------------1.00------------
........................................................................................ACCTTGGCCTTTTTTTTTTCGAG...........................................................................................................................................231.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTGTT.................................................................................................................................291.000.001.00---------------------------------------------------
..............................................................................................................................................................................................................ATTCTCCTGCCTCAGCCTCCGAGTAGCCAA..............301.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTGTGT........................................................................................................................................231.000.00------------------------------1.00---------------------
.........................................................................................................................................................................................................................TCAGCCTCCGAGTAGCTGGG.............2001.001.00-----1.00----------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTCACC................................................................................................................................301.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCTGG...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCTT................................................................................................................................301.000.001.00---------------------------------------------------
........................................................................................................................................................AGTGCAATGGCACGATCTTGGCTCACGC......................................................................281.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTGGC............................................................................................................................................181.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCGC....................................................................................................................................261.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTCCG...................................................................................................................................271.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTCTTG.....................................................................................................................................261.000.001.00---------------------------------------------------
................................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCGTTT.............................291.000.00----------------------------------------1.00-----------
...........................................................................................................................................TTACCCAGGCTGGAGTGCATACC........................................................................................231.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTCACT................................................................................................................................301.000.00---1.00------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCACG...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTCCTT................................................................................................................................301.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTATC......................................................................................................................................251.000.00---1.00------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTAAGG......................................................................................................................................251.000.001.00---------------------------------------------------
..........................................................................................................................................................................................................AGTGATTCTCCTGCCTCAGCCTCCGAGTCGC.................311.000.001.00---------------------------------------------------
.........................................................................................................................................................GTGCAATGGCACGATCTTGGCTCACTGC.....................................................................2801.001.00----------------1.00-----------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTCGT........................................................................................................................................221.000.00-1.00--------------------------------------------------
..........................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTAAA.......................................................251.000.00-------------------------------1.00--------------------
................................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTGCCAG...............................271.000.00----------1.00-----------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTGAAG......................................................................................................................................241.000.001.00---------------------------------------------------
.........................................................................................................................................................................TTGGCTCACTGCAACCTCTGCCTCCCGGGGC..................................................311.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTGCCC...............................................................................................................................311.000.001.00---------------------------------------------------
.....................................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA............................251.000.00-----------------------------------------1.00----------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTATTG...............................................................................................................................311.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTCGGC...........................................................................................................................................201.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTAAC............................................................................................................................................191.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCTTA...................................................................................................................................271.000.00-1.00--------------------------------------------------
.........................................................................................................................................................GTGCAATGGCACGATCTTGGCTCACTG......................................................................2701.001.00----1.00-----------------------------------------------
.............................................................................................................................................ACCCAGGCTGGAGTGCAATGGA.......................................................................................221.000.00-----------1.00----------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTCCGG..................................................................................................................................281.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTAACA...............................................................................................................................321.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTACC........................................................................................................................................221.000.00-1.00--------------------------------------------------
...............................................................................................CCTTTTTTTTTTTTTTTTTTTTTTGAACAG.............................................................................................................................301.000.00-1.00--------------------------------------------------
.........................................................................................................................................................................................................................TCAGCCTCCGAGTAGCTGGACC...........221.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTCAG.................................................................................................................................301.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCAAG...............................................................................................................................311.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTGGC....................................................................................................................................261.000.001.00---------------------------------------------------
..........................................................................................................................................................................................................AGTGATTCTCCTGCCTCAGCCTCCGACT....................281.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTACGC...............................................................................................................................311.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTGGG.......................................................................................................................................241.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTGTT.....................................................................................................................................251.000.001.00---------------------------------------------------
...........................................................................................................................................................................................................................AGCCTCCGAGTAGCTGGCACC..........211.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTGGG.....................................................................................................................................261.000.001.00---------------------------------------------------
...............................................................................................CCTTTTTTTTTTTTTTTTTTTTTTGTCGG..............................................................................................................................291.000.00-------------1.00--------------------------------------
..........................................................................................CTTGGCCTTTTTTTTTTTTTTTTTCTTT....................................................................................................................................281.000.00---1.00------------------------------------------------
........................................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA............................221.000.00--------------------------1.00-------------------------
..............................................................................................GCCTTTTTTTTTTTTTTTTTTTTTTGTTAT..............................................................................................................................301.000.00------------1.00---------------------------------------
...............................................................................................................................................................TGGCACGATCTTGGCTCAGTG......................................................................211.000.00----1.00-----------------------------------------------
.........................................................................................................................................TGTTACCCAGGCTGGAGTGCAATGGCTGG....................................................................................291.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTCCCG................................................................................................................................301.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTAG.....................................................................................................................................261.000.001.00---------------------------------------------------
............................................................................................................................................TACCCAGGCTGGAGTGCAATGAAA......................................................................................2401.001.00----------------------------------------------1.00-----
............................................................................................TGGCCTTTTTTTTTTTTCTCC.........................................................................................................................................211.000.001.00---------------------------------------------------
......................................................................................................................................TCTTGTTACCCAGGCTGGAGTGCAATGGGGCA....................................................................................321.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTACG................................................................................................................................301.000.001.00---------------------------------------------------
...........................................................................................................................................TTACCCAGGCTGGAGTGCAATGGCACGGAG.................................................................................301.000.00---1.00------------------------------------------------
................................................................................................................................................................................................................TCTCCTGCCTCAGCCTCCGAGTAGGGGG..............281.000.001.00---------------------------------------------------
................................................................................................................................................................................................................TCTCCTGCCTCAGCCTCCGAGCC...................231.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTTGGG...............................................................................................................................321.000.001.00---------------------------------------------------
...........................................................................................................................................................................................................................AGCCTCCGAGTAGCTGGGGAG..........211.000.00-1.00--------------------------------------------------
..........................................................................................CTTGGCCTTTTTTTTTTTTTTTTTTTTTTCC.................................................................................................................................311.000.001.00---------------------------------------------------
......................AGATGTTTCTCAGCACACTGGAT.............................................................................................................................................................................................................2311.001.00-----------------------1.00----------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCACT...................................................................................................................................271.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTCG.....................................................................................................................................261.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTCAG..........................................................................................................................................211.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTCAGC.......................................................................................................................................231.000.001.00---------------------------------------------------
.............................................................................................................................GAGTTTCGCTCTTGTTAAA..........................................................................................................191.000.00--------------------------------------1.00-------------
...........................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGAGACC.......................................241.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTTGG................................................................................................................................311.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTTCC................................................................................................................................311.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTCTC.................................................................................................................................291.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTAG............................................................................................................................................191.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTGTTC...........................................................................................................................................191.000.001.00---------------------------------------------------
............................................................................................................................................TACCCAGGCTGGAGTGCAATG.........................................................................................2101.001.00-----1.00----------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTAGG................................................................................................................................301.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTGGTC.................................................................................................................................301.000.001.00---------------------------------------------------
................................................................................................................................................................................................................TCTCCTGCCTCAGCCTCCGAGTAGCTCGGA............301.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTGGGA....................................................................................................................................261.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTAGG.....................................................................................................................................261.000.001.00---------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTAGCCGGT.............301.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTTCCC...............................................................................................................................321.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTAAGC..................................................................................................................................281.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTAAAA...............................................................................................................................321.000.00---1.00------------------------------------------------
...............................................................................................CCTTTTTTTTTTTTTTTTTTTTTTGTACA..............................................................................................................................291.000.00------------1.00---------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTCACC.........................................................................................................................................211.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTCTG....................................................................................................................................271.000.001.00---------------------------------------------------
..........................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTCGACG.....................................................271.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTAACT....................................................................................................................................271.000.00-1.00--------------------------------------------------
.......................................................................................................................................CTTGTTACCCAGGCTGGAGTGCAAT..........................................................................................2501.001.00---------------------------------1.00------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTCGGG...............................................................................................................................321.000.001.00---------------------------------------------------
.........................................................................................................................................................................................................................TCAGCCTCCGAGTAGCTAGGG............211.000.001.00---------------------------------------------------
..........................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTAGG.......................................................251.000.00-1.00--------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTAAG.................................................................................................................................301.000.00-1.00--------------------------------------------------
...................................................................................................................TTTTGAGACGGAGTTTCGCTAAGA...............................................................................................................241.000.00-------------------------------------1.00--------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTGGCC...............................................................................................................................311.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTCGAG.......................................................................................................................................241.000.00-1.00--------------------------------------------------
.........................................................................................................................................................................TTGGCTCACTGCAACCTCTGCCTCCCGGGCG..................................................311.000.001.00---------------------------------------------------
..................................................................................................................................................................................................................................GAGTAGCTGGGATTATATACT...211.000.00--------------1.00-------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCAAC...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTCTTA.........................................................................................................................................211.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTCGGG....................................................................................................................................261.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTGGTT..................................................................................................................................291.000.001.00---------------------------------------------------
.........................................................................................................................................TGTTACCCAGGCTGGAGTGCACGGC........................................................................................251.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTCGG...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTGGTC...............................................................................................................................311.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTGGG.....................................................................................................................................251.000.001.00---------------------------------------------------
......................................................................................................................................TCTTGTTACCCAGGCTGGAGCGCG............................................................................................241.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTATGT..................................................................................................................................281.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTCGG.................................................................................................................................291.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCAC................................................................................................................................301.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTCC....................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTAACC..................................................................................................................................281.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTACCC......................................................................................................................................251.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTGGAT...............................................................................................................................311.000.001.00---------------------------------------------------
..........................................................................................................................................................................TGGCTCACTGCAACCTCTGCCTAGGT......................................................261.000.00-1.00--------------------------------------------------
.......................................................................................................TTTTTTTTTTTTTTTTGAGACGGAGTTTAGCC...................................................................................................................321.000.00-1.00--------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTAAAC..................................................................................................................................281.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTCT.................................................................................................................................291.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTAAAC..........................................................................................................................................201.000.001.00---------------------------------------------------
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTGGGG....................................................................................................................................271.000.001.00---------------------------------------------------
.................................................................................................................................................AGGCTGGAGTGCAATGGCACGATCGCCG.............................................................................281.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTGTT..................................................................................................................................281.000.00-------------1.00--------------------------------------
...............................................................................................CCTTTTTTTTTTTTTTTTTTTTTTGTCG...............................................................................................................................281.000.00-------------------------1.00--------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTCTGC...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTCGT...................................................................................................................................271.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTCATC.......................................................................................................................................231.000.00-1.00--------------------------------------------------
..............................................................................................................................................................................................................ATTCTCCTGCCTCAGCCTCCGAGTAGCGGGG.............311.000.001.00---------------------------------------------------
............................................................................................TGGCCTTTTTTTTTTTTTTTTTTTTTTATT................................................................................................................................301.000.001.00---------------------------------------------------
.........................................................................................................................................................................................................................TCAGCCTCCGAGTAGCTGGGATGGG........251.000.001.00---------------------------------------------------
...............................................................................AACATTTAAACCTTGGACCT.......................................................................................................................................................201.000.00----------1.00-----------------------------------------
................................................................................................................................TTTCGCTCTTGTTACCCAGGCTGGAGCGC.............................................................................................291.000.00-1.00--------------------------------------------------
...............................................................................................................................................................................................................................TCCGAGTAGCTGGGATTAT........1901.001.00-----------------------------------------------1.00----
...........................................................................................TTGGCCTTTTTTTTTTTTTTTACCG......................................................................................................................................251.000.001.00---------------------------------------------------
...........................TTTCTCAGCACACTGGATCC...........................................................................................................................................................................................................2020.500.50---------------------------------------------------0.50
...........................................................................................TTGGCCTTTTTTTTTTTTTTTTTTTTTTGAG................................................................................................................................3190.220.220.22---------------------------------------------------
..........................................................................................CTTGGCCTTTTTTTTTTTTTTTTTTTTTTG..................................................................................................................................3070.140.14-------------0.14--------------------------------------

Antisense strand
GAGGAGAGGACCACCATACATGAGATGTTTCTCAGCACACTGGATCCAAAGTAAGGATGGTGAGATTCCACGTTGGGAAAACATTTAAACCTTGGCCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTTACCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGAGTAGCTGGGATTATAGGCATGC
.........................................................................................((..(((((...........((((......)))).((((.....))))........))))))).((((....)))).....................................................................................
......................................................................................87................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189785SRR390723(GSM850202)
total small RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		GSM956925PAZD5GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
...........................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCATC................................... 285.000.00------5.00---------------------------------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATGGAC.............................................................................. 264.000.003.001.00--------------------------------------------------
.............................................................................................GGCCTTTTTTTTTTTTTTTTTTTTTTGACG............................................................................................................................... 303.000.00--3.00-------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTCCG................. 262.000.002.00---------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGCCGC................. 262.000.002.00---------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTCCGC................ 272.000.002.00---------------------------------------------------
................................................................................................................................................................................................................TCTCCTGCCTCAGCCTCCGAGTGA.................. 242.000.00---------2.00------------------------------------------
......................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGTGATCGTG...................................... 302.000.002.00---------------------------------------------------
.......................................................................................................................................................................................................................CCTCAGCCTCCGAGTAGAGC............... 202.000.00--------------------2.00-------------------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATCTGGTG............................................................................ 282.000.002.00---------------------------------------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATAGGC.............................................................................. 262.000.001.001.00--------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTAT.................. 251.000.00---------1.00------------------------------------------
..........................................................................................................................ACGGAGTTTCGCTCTTGTTACCCAGGCTGTC................................................................................................. 311.000.001.00---------------------------------------------------
...............................................................................................................TTTTTTTTGAGACGGAGTTTCGCTCGAC............................................................................................................... 281.000.00---1.00------------------------------------------------
...........................................................................................................................................................................................TGCCTCCCGGGTTCAAGTATTT......................................... 221.000.00--------------------------------------------------1.00-
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGACCGT.................. 251.000.001.00---------------------------------------------------
.........................................................................................................................................................................................TCTGCCTCCCGGGTTCAAGTTG........................................... 221.000.00----1.00-----------------------------------------------
..........................................................................................................................................................TGCAATGGCACGATCTTGGCTT.......................................................................... 221.000.00--------1.00-------------------------------------------
................................................................................................................................................CAGGCTGGAGTGCAATGGCACGATCGAC.............................................................................. 281.000.001.00---------------------------------------------------
...............................................................................................................................................................................................................................TCCGAGTAGCTGGGATCGAC....... 201.000.00--------------1.00-------------------------------------
......................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGTGCCC......................................... 271.000.00-1.00--------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTACCGC............... 281.000.001.00---------------------------------------------------
.......................................................................................................................................................................................................................CCTCAGCCTCCGAGTAGAT................ 191.000.00----------------------------1.00-----------------------
.....................................................................................................................TTGAGACGGAGTTTCGCTCT................................................................................................................. 201.000.00----------1.00-----------------------------------------
..................................................................................................................................................................................................................TCCTGCCTCAGCCTCCGAGTTC.................. 221.000.001.00---------------------------------------------------
.....................................................................................................................................................................................AACCTCTGCCTCCCGGGTTCG................................................ 211.000.00-1.00--------------------------------------------------
...............................................................................................................................................................................................................TTCTCCTGCCTCAGCCTCCGAGTAATG................ 271.000.00---1.00------------------------------------------------
...................................................................................................................................CGCTCTTGTTACCCAGGCTC................................................................................................... 201.000.00------------------------------------1.00---------------
....................................................................................................................................................................................................................CTGCCTCAGCCTCCGAGTAAAG................ 221.000.00-------------------------------------------1.00--------
............................................................................................................................................TACCCAGGCTGGAGTGCACATA........................................................................................ 221.000.00-----------------1.00----------------------------------
.............................................................................................GGCCTTTTTTTTTTTTTTTTTTTTTTGCCG............................................................................................................................... 301.000.00--1.00-------------------------------------------------
..........................................................................................................................................................................................CTGCCTCCCGGGTTCAAGTGATTCTCCTGCCGGTG............................. 351.000.00---------------------1.00------------------------------
.............................................................................................GGCCTTTTTTTTTTTTTTTTTTTTTTGATC............................................................................................................................... 301.000.00--1.00-------------------------------------------------
.................................................................................................................................................................................................................CTCCTGCCTCAGCCTCCGAGTTA.................. 231.000.00----------------------1.00-----------------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATGGGT.............................................................................. 261.000.001.00---------------------------------------------------
.....................................................................................................................................................................................................................TGCCTCAGCCTCCGAGTTA.................. 191.000.00---------------------------1.00------------------------
...............................................................................................................TTTTTTTTGAGACGGAGTTTCGCTCTTCCAG............................................................................................................ 311.000.00------------1.00---------------------------------------
.............................................................................................GGCCTTTTTTTTTTTTTTTTTTTTTGACT................................................................................................................................ 291.000.00--1.00-------------------------------------------------
..........................................................................................CTTGGCCTTTTTTTTTTTTTTTTTTTTTTCCCC............................................................................................................................... 331.000.00--1.00-------------------------------------------------
.............................................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCTGGGAC............................... 301.000.00-------1.00--------------------------------------------
.............................................................................................GGCCTTTTTTTTTTTTTTTTTTTTTTGATG............................................................................................................................... 301.000.00--1.00-------------------------------------------------
...........................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCATG................................... 281.000.00-------1.00--------------------------------------------
.....................................................................................................................................................................................................................TGCCTCAGCCTCCGAGACAG................. 201.000.001.00---------------------------------------------------
......................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGGGC........................................... 251.000.00--------1.00-------------------------------------------
..............................................................................................................................................................................................................ATTCTCCTGCCTCAGCCTCCGAGTAGTCTG.............. 301.000.00-------1.00--------------------------------------------
..........................................................................................................................................................TGCAATGGCACGATCTTGGCTGA......................................................................... 231.000.00--------1.00-------------------------------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATCTGGTC............................................................................ 281.000.001.00---------------------------------------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATGGTG.............................................................................. 261.000.001.00---------------------------------------------------
...........................................................................................................................................................................................TGCCTCCCGGGTTCAAGTGATTCTCA..................................... 261.000.00----------------------------------1.00-----------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATGAGC.............................................................................. 261.000.00-1.00--------------------------------------------------
.................................................................................................................................................................................................................CTCCTGCCTCAGCCTCCGAGTC................... 221.000.00-1.00--------------------------------------------------
...............................................................................................................................................................................CACTGCAACCTCTGCCTCCCGGGTTGCA............................................... 281.000.00-1.00--------------------------------------------------
......................................................................................................................................................................................................................TACTCGGAGGCTGAGGC................... 1701.001.00----------------1.00-----------------------------------
..........................................................................................................................................................TGCAATGGCACGATCTTGGGA........................................................................... 211.000.00--------1.00-------------------------------------------
..............................................................................................................................................................................................................................TCCCAGCTACTCGGAG............ 1601.001.00----1.00-----------------------------------------------
.................................................................................................................................TTCGCTCTTGTTACCTTT....................................................................................................... 181.000.00-----------------1.00----------------------------------
................................................................................................................................................................................................CCCGGGTTCAAGTGATTCTCCTT................................... 231.000.00-----1.00----------------------------------------------
.............................................................................................................................................................................................................GATTCTCCTGCCTCAGCCTCCGAGTCCC................. 281.000.00-1.00--------------------------------------------------
...................................................................................................................................................................................................................CCTGCCTCAGCCTCCGAGTCGG................. 221.000.001.00---------------------------------------------------
.................................................................................................................................................................................CTGCAACCTCTGCCTCCCGGGTTCAA............................................... 261.000.00------------------------------------------1.00---------
..............................................................................................................................................................................................................................CTCCGAGTAGCTGGGATAAC........ 201.000.00-1.00--------------------------------------------------
......................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAGGCGG.......................................... 261.000.001.00---------------------------------------------------
......................................................................................................................................................................................ACCTCTGCCTCCCGGGTTCAAA.............................................. 221.000.00-------------------------------------------------1.00--
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATCTAGGC............................................................................ 281.000.001.00---------------------------------------------------
.......................................................................................................................................................................................................................TACTCGGAGGCTGAGG................... 1601.001.00-----1.00----------------------------------------------
.............................................................................................................................................................................................CCTCCCGGGTTCAAGTGATTCTCCA.................................... 251.000.00----1.00-----------------------------------------------
.................................................................................................................................................................................................................CTCCTGCCTCAGCCTCCGATTAT.................. 231.000.00-----------------------------1.00----------------------
..................................................................................................................................................GGCTGGAGTGCAATGGCACGATCTGAGC............................................................................ 281.000.001.00---------------------------------------------------