ID: uc004cyh.3_intron_1_0_chrX_17855851_r.5p
GENE: (1)
chrX:17879018-17879267-


(1)
AGO1.ip
(1)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(7)
BREAST
(9)
CELL-LINE
(7)
CERVIX
(1)
HELA
(1)
LIVER
(1)
OTHER
(19)
SKIN

Sense strand
CACACTCGACCACCCCGCGGCTTCCTGGAGGCGGCGGCCGCGATTGCGAGGTAGTGGCCGCGGCGCCCCCGTGCGGGCCGGGGTCACCCCCGCCCTCCCCGCGCGGAGCTGCCACCGGGACGCAGGGGGCGCGCCGGGCTGGGCGCGCCTGGCGGGGCCCGGCGCCCGGGGAGGGGCCTGCTCCCGGGGGCAGGACGGCGCCCGGAGGCCGGGGCCGGCTGGGAGGGCCGGGCGGGGGCGGGGACGCGGG
............................................................................................(((((((((.(((.........(((((.(((...(((((((((......))))))))).)))...)))))))).)))))))))...........................................................................
.....................................................................................86..........................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532871(GSM532871)
G652N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR040009(GSM532894)
G727T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040016(GSM532901)
G645N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
...........................................................................................................................................................GGCCCGGCGCCCGGGGCCG............................................................................1931.000.0019.0012.00-------------------------------------------------
..........................................................................................CGCCCTCCCCGCGCGTACG.............................................................................................................................................195.000.00------2.00------------------------1.001.00-1.00----------------
...........................................................................................................................................................GGCCCGGCGCCCGGGGCCGA...........................................................................204.000.004.00--------------------------------------------------
....................................................................................................................................GCCGGGCTGGGCGCGCGC....................................................................................................182.000.00------------------1.00--------------------1.00-----------
..........................................................................................CGCCCTCCCCGCGCGTAC..............................................................................................................................................182.000.00----------2.00----------------------------------------
.....................................................GTGGCCGCGGCGCCCGGG...................................................................................................................................................................................181.000.00--------1.00------------------------------------------
.................................................................................................................................CGCGCCGGGCTGGGCGCCA......................................................................................................191.000.00-------------------------------------1.00-------------
..........................................ATTGCGAGGTAGTGGCCGCGGCGCC.......................................................................................................................................................................................2511.001.00--------------------------1.00------------------------
............................................................................................................................GGGGGCGCGCCGGGCTCCCG..........................................................................................................201.000.001.00--------------------------------------------------
.........................................................................................................................GCAGGGGGCGCGCCGCAG...............................................................................................................181.000.00-------1.00-------------------------------------------
......................................................................................................................................................................................................................CCGGCTGGGAGGGCCG....................1611.001.00---1.00-----------------------------------------------
.........................................................................................................................................................................................................CCGGAGGCCGGGGCCCGCG..............................191.000.00------------------------------1.00--------------------
.......................................................................................................................................GGGCTGGGCGCGCCTGGAC................................................................................................191.000.00----1.00----------------------------------------------
...............................................................................................................................................CGCGCCTGGCGGGGCTC..........................................................................................171.000.001.00--------------------------------------------------
....................................................AGTGGCCGCGGCGCCGG.....................................................................................................................................................................................171.000.00----------------------------1.00----------------------
........................................................................................CCCGCCCTCCCCGCGCGCGCC.............................................................................................................................................211.000.00-------------------------1.00-------------------------
........................................................................................CCCGCCCTCCCCGCGCGCGCG.............................................................................................................................................211.000.00---------------------------1.00-----------------------
....................................................................................................................................GCCGGGCTGGGCGCGCGCCG..................................................................................................201.000.00-----------------------------------1.00---------------
.......................................................................................................................................................................................................................................GCGGGGGCGGGGACGCTTG191.000.00--1.00------------------------------------------------
............................................................CGGCGCCCCCGTGCGGGCCGCCGG......................................................................................................................................................................241.000.00-1.00-------------------------------------------------
........................................................................................................................CGCAGGGGGCGCGCCGGCG...............................................................................................................191.000.00----------------1.00----------------------------------
...............................................................................................................................................................................................................................AGGGCCGGGCGGGGGCCCCC.......201.000.00--1.00------------------------------------------------
..................................................................CCCCGTGCGGGCCGGC........................................................................................................................................................................161.000.00-------------------1.00-------------------------------
...........................................................................................................................................................................................GGGCAGGACGGCGCCCGGTGC..........................................211.000.00-------1.00-------------------------------------------
.........................................................................................................................................................................GGAGGGGCCTGCTCCCGTTGC............................................................211.000.00---------------------1.00-----------------------------
............................................................................................................................................................................................................................GGGAGGGCCGGGCGGCA.............171.000.00----------------------------------------1.00----------
...........................................................................................................................AGGGGGCGCGCCGGGCTGT............................................................................................................191.000.00--------------1.00------------------------------------
............................................................................................................................GGGGGCGCGCCGGGCTGGG...........................................................................................................1911.001.00-------------1.00-------------------------------------
.....................................................................................................................................................................................................GCGCCCGGAGGCCGGGGC...................................1830.670.67----------------------------------------------0.330.33---
..................................................................................................................................GCGCCGGGCTGGGCGC........................................................................................................1630.670.67------------------------------------------0.67--------
...................................................................................................................................................................................................CGGCGCCCGGAGGCCGGGGC...................................2020.500.50--------------------------------------------0.50------
........................................................................................................................................................................................................CCCGGAGGCCGGGGCCG.................................1720.500.50---------------------------------------------0.50-----
..................................................................................................................................GCGCCGGGCTGGGCGCCG......................................................................................................1830.330.67-------------------------------------------------0.33-
.......................................................................................................................................................................................................GCCCGGAGGCCGGGGC...................................1630.330.33------------------------------------------------0.33--
...............................................................................................................................GGCGCGCCGGGCTGGG...........................................................................................................1660.170.170.17--------------------------------------------------
..........................................................................................................................CAGGGGGCGCGCCGG.................................................................................................................1570.140.14--------------------------------------------------0.14

Antisense strand
CACACTCGACCACCCCGCGGCTTCCTGGAGGCGGCGGCCGCGATTGCGAGGTAGTGGCCGCGGCGCCCCCGTGCGGGCCGGGGTCACCCCCGCCCTCCCCGCGCGGAGCTGCCACCGGGACGCAGGGGGCGCGCCGGGCTGGGCGCGCCTGGCGGGGCCCGGCGCCCGGGGAGGGGCCTGCTCCCGGGGGCAGGACGGCGCCCGGAGGCCGGGGCCGGCTGGGAGGGCCGGGCGGGGGCGGGGACGCGGG
............................................................................................(((((((((.(((.........(((((.(((...(((((((((......))))))))).)))...)))))))).)))))))))...........................................................................
.....................................................................................86..........................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532871(GSM532871)
G652N. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR040009(GSM532894)
G727T. (cervix)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR040016(GSM532901)
G645N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
..........................................................................................................................................................GGGCCCGGCGCCCGGGGG.............................................................................. 184.000.00----1.00-------1.00-------1.00------------1.00-----------------
.........................................................................................CCGCCCTCCCCGCGCGAT............................................................................................................................................... 181.000.00-----------------------------------------1.00---------
..........................................................................................................................................................GGGCCCGGCGCCCGGGGGG............................................................................. 191.000.00--------------------------------------1.00------------
............................................................................................................................................GGGCGCGCCTGGCGGCGGC........................................................................................... 191.000.00--------1.00------------------------------------------
......................................................................................................................................................................................................................................GGCGGGGGCGGGGACGG... 171.000.001.00--------------------------------------------------
..........................................................................................CGCCCTCCCCGCGCGAA............................................................................................................................................... 171.000.001.00--------------------------------------------------
............................................................................................................................GGGGGCGCGCCGGGCTCC............................................................................................................ 181.000.00-1.00-------------------------------------------------
.............................GGCGGCGGCCGCGATCGC........................................................................................................................................................................................................... 181.000.00---------------1.00-----------------------------------
.............................................................................................................................GGGGCGCGCCGGGCTGGTTT......................................................................................................... 201.000.00-----------------------------1.00---------------------
...............................................................................................................................GGCGCGCCGGGCTGGGA.......................................................................................................... 1761.000.00-----1.00---------------------------------------------
..........................................................................................................................................................................................................................................GGGGCGGGGACGCGGGTGG 191.000.00-1.00-------------------------------------------------
.....................................................................................................................................................................................................GCGCCCGGAGGCCGGGGG................................... 181.000.00-1.00-------------------------------------------------
....................................................................................................................................................................................................................................CGGGCGGGGGCGGGGACTT... 191.000.00------------------------1.00--------------------------
......................................................................................................................................................GGCGGGGCCCGGCGCGGTC................................................................................. 191.000.00---------1.00-----------------------------------------
.................................................................................................................................................CGCCTGGCGGGGCCCACA....................................................................................... 181.000.00-----1.00---------------------------------------------
.......................................................................................................................................................................................................................................GCGGGGGCGGGGACGCGGGCC 211.000.00----------------------1.00----------------------------
......................................................................................................................................................GGCGGGGCCCGGCGCGGC.................................................................................. 181.000.00-1.00-------------------------------------------------
..........................................................................................................................................................GGGCCCGGCGCCCGGGGGT............................................................................. 191.000.00-----------------1.00---------------------------------
..........................................................................................................................................................GGGCCCGGCGCCCGGGGGG............................................................................. 191.000.00-----------1.00---------------------------------------
..CACTCGACCACCCCGGACC..................................................................................................................................................................................................................................... 191.000.00-----------------------1.00---------------------------
.............................................................................................................................................................CCCGGCGCCCGGGGAGGGTC......................................................................... 201.000.00---------1.00-----------------------------------------
...................................................................................................................CCGGCGCGCCCCCTGCGTCCCG................................................................................................................. 2211.001.00---1.00-----------------------------------------------
.............................................................................................................................................................................GGGCCTGCTCCCGGGAAG........................................................... 181.000.00------------------------------------1.00--------------
.................................................................................................................................................................................................................................TCCCCGCCCCCGCCCGGCC...... 1920.500.50-0.50-------------------------------------------------
...................................................................................................................................................................................GTCCTGCCCCCGGGAGC...................................................... 1720.500.50-------------------------------------------0.50-------