ID: uc004cxx.2_intron_1_0_chrX_17706015_f.3p
GENE: (2)
chrX:17710255-17710504+


(6)
B-CELL 		(3)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(2)
LIVER 		(5)
OTHER 		(2)
SKIN

Sense strand
TGCATCCAATTTCATATTAATAGTAAGTGAAAGTTCAATTAAAAACCATTCTGAAAATCTTATTTGGTATTCAAATTAGCTAAAGTAATGAAAACTCACTTTTTTTTTTTTTTACAGCCTTTTGCTAACACTCCCAAGGGGAAAAGAGAAATTGAAAATGCCAAGTGTATTTCAGTATTACTGCTTTTTCTCCTTCTCAGAACACCGGAGCCGGAGCGATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTT
................................................................................................((((((((((..(((((....(((((((..........))))))).....)))))..)))))....)))))...................................................................................
......................................................................................87...............................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR189785SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343337SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037938(GSM510476)
293Red. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...........................................................................................AAACTCACTTTTTTTTTTTTTTAAG......................................................................................................................................2519.000.0010.003.004.001.00-1.00--------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTAAG......................................................................................................................................2412.000.002.006.002.002.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTAAAG.....................................................................................................................................249.000.003.005.001.00-----------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTAAG........................................................................................................................................238.000.002.003.001.002.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTAAAG......................................................................................................................................238.000.001.004.00---3.00--------------------------
.............................................................................................ACTCACTTTTTTTTTTTAAAG........................................................................................................................................216.000.003.002.00---1.00--------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTATTTG....................................................................................................................................246.000.004.002.00------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTAAAG.......................................................................................................................................225.000.00-3.00---2.00--------------------------
............................................................................................AACTCACTTTTTTTTTTTTCTG........................................................................................................................................224.000.00--2.002.00----------------------------
................................................................................................CACTTTTTTTTTTTTTTATAG.....................................................................................................................................214.000.002.00-1.001.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCTG......................................................................................................................................234.000.00--2.002.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTCTTG......................................................................................................................................234.000.00--3.001.00----------------------------
................................................................................................CACTTTTTTTTTTTTTTATTTG....................................................................................................................................224.000.00--1.002.00-1.00--------------------------
.............................................................................................ACTCACTTTTTTTTTTTCTG.........................................................................................................................................203.000.00--2.00-1.00---------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTTTAAAG.....................................................................................................................................263.000.001.001.001.00-----------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTTTCAAG.....................................................................................................................................263.000.001.001.001.00-----------------------------
...........................................................................................AAACTCACTTTTTTTTTTTAAG.........................................................................................................................................223.000.001.001.001.00-----------------------------
.................................................................................................ACTTTTTTTTTTTTTTACACAG...................................................................................................................................223.000.00--1.00-2.00---------------------------
................................................................................................CACTTTTTTTTTTTTTTATAT.....................................................................................................................................213.000.001.001.00-1.00----------------------------
............................................................................................................................................................................................................CCGGAGCCGGAGCGAAAGC...........................193.000.00-------1.00-----1.00---1.00--------------
............................................................................................AACTCACTTTTTTTTTTTTAAG........................................................................................................................................223.000.002.00-1.00-----------------------------
...............................................................................................TCACTTTTTTTTTTTTTTATTTG....................................................................................................................................233.000.00-2.00-1.00----------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTTCAAG......................................................................................................................................252.000.00---2.00----------------------------
............................................................................................AACTCACTTTTTTTTTTTTAG.........................................................................................................................................212.000.00-1.00-1.00----------------------------
..............................................................................................CTCACTTTTTTTTTTTTTATTT......................................................................................................................................222.000.002.00-------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCG.......................................................................................................................................222.000.00--1.001.00----------------------------
...........................................................................................AAACTCACTTTTTTTTTTCAAG.........................................................................................................................................222.000.00---1.00-1.00--------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTAA.........................................................................................................................................222.000.002.00-------------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTAATGG....................................................................................................................................242.000.00-1.001.00-----------------------------
............................................................................................................................................................................................................CCGGAGCCGGAGCGAAAG............................182.000.00--------2.00-----------------------
............................................................................................AACTCACTTTTTTTTTTTTAAAG.......................................................................................................................................232.000.001.001.00------------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTAAAA.....................................................................................................................................232.000.001.001.00------------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTAAT......................................................................................................................................242.000.001.00--1.00----------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTTCAA.......................................................................................................................................241.000.00---1.00----------------------------
.....................................................................................................TTTTTTTTTTTTACAGCCTTTCGAC............................................................................................................................251.000.00----1.00---------------------------
............................................................................................AACTCACTTTTTTTTTTTCTG.........................................................................................................................................211.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTAAAT.....................................................................................................................................241.000.00-1.00------------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTAAAGG....................................................................................................................................241.000.001.00-------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCGAG.....................................................................................................................................241.000.00----1.00---------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCTTG.....................................................................................................................................241.000.00---1.00----------------------------
..........................................................................................................................................................................................................CACCGGAGCCGGAGCGATCGCCGAG.......................2511.001.00-----------1.00--------------------
.............................................................................................ACTCACTTTTTTTTTTTATTT........................................................................................................................................211.000.001.00-------------------------------
......................................................................................................TTTTTTTTTTTACAGCCTTTGC..............................................................................................................................221.000.00----1.00---------------------------
............................................................................................AACTCACTTTTTTTTTTTAAAT........................................................................................................................................221.000.001.00-------------------------------
............................................................................................AACTCACTTTTTTTTTTTTGG.........................................................................................................................................211.000.00-1.00------------------------------
.................................................................................................ACTTTTTTTTTTTTTTACAGTTC..................................................................................................................................231.000.00----1.00---------------------------
..............................................................................................CTCACTTTTTTTTTTTTTGGC.......................................................................................................................................211.000.00----1.00---------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTAAAT......................................................................................................................................231.000.00-1.00------------------------------
...........................................................................................AAACTCACTTTTTTTTTCAAG..........................................................................................................................................211.000.00-----1.00--------------------------
............................................................................................AACTCACTTTTTTTTTTTTTAAAC......................................................................................................................................241.000.00----1.00---------------------------
..............................................................................................CTCACTTTTTTTTTTTTTATTG......................................................................................................................................221.000.00--1.00-----------------------------
..............................................................................................CTCACTTTTTTTTTTTTATTG.......................................................................................................................................211.000.00-1.00------------------------------
..............................................................................................................................................................................................TCCTTCTCAGAACACATG..........................................181.000.00-------------------1.00------------
...........................................................................................AAACTCACTTTTTTTTTTTTTCG........................................................................................................................................231.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCT.......................................................................................................................................221.000.00--1.00-----------------------------
.............................................................................................ACTCACTTTTTTTTTTTCG..........................................................................................................................................191.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTAAA......................................................................................................................................231.000.001.00-------------------------------
.................................................................................................ACTTTTTTTTTTTTTTACAGACT..................................................................................................................................231.000.00------1.00-------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTAAATA....................................................................................................................................261.000.001.00-------------------------------
............................................................................................AACTCACTTTTTTTTTTTTACG........................................................................................................................................221.000.001.00-------------------------------
.............................................................................................ACTCACTTTTTTTTTTATAG.........................................................................................................................................201.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTACAG......................................................................................................................................231.000.00------1.00-------------------------
.............................................................................................ACTCACTTTTTTTTTTTCCTG........................................................................................................................................211.000.00--1.00-----------------------------
........................................................................................................TTTTTTTTTACAGCCAGGG...............................................................................................................................191.000.00----1.00---------------------------
............................................................................................AACTCACTTTTTTTTTTTTTAAAG......................................................................................................................................241.000.00-1.00------------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTTAGG.......................................................................................................................................241.000.001.00-------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTAATTG....................................................................................................................................251.000.001.00-------------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTAAATA....................................................................................................................................241.000.00-1.00------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTAAAA.......................................................................................................................................221.000.00--1.00-----------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTCAAG.......................................................................................................................................241.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTAAA........................................................................................................................................211.000.00-----1.00--------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCAG......................................................................................................................................231.000.00--1.00-----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCAT......................................................................................................................................231.000.001.00-------------------------------
.................................................................................................ACTTTTTTTTTTTTTTACGTAG...................................................................................................................................221.000.001.00-------------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTAA.......................................................................................................................................231.000.001.00-------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTGTGG......................................................................................................................................231.000.001.00-------------------------------
...........................................................................................AAACTCACTTTTTTTTTTTTTTAA.......................................................................................................................................241.000.00-1.00------------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTAACTG....................................................................................................................................241.000.001.00-------------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTCTTG.....................................................................................................................................251.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTTCCCG.....................................................................................................................................241.000.00----1.00---------------------------
.................................................................................................ACTTTTTTTTTTTTTTACAGCCTAG................................................................................................................................251.000.00----1.00---------------------------
............................................................................................AACTCACTTTTTTTTTTCTG..........................................................................................................................................201.000.00--1.00-----------------------------
.................................................................................................................................................GAGAAATTGAAAATGAAAC......................................................................................191.000.00---------------1.00----------------
.............................................................................................ACTCACTTTTTTTTTTTTTTAATTA....................................................................................................................................251.000.00-1.00------------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTAAAG.....................................................................................................................................251.000.001.00-------------------------------
...........................................................................................AAACTCACTTTTTTTTTTTAAAG........................................................................................................................................231.000.001.00-------------------------------
.................................................................................................ACTTTTTTTTTTTTTTACAGTGG..................................................................................................................................231.000.00------1.00-------------------------
.................................................................................................ACTTTTTTTTTTTTTTACGGG....................................................................................................................................211.000.00----1.00---------------------------
..............................................................................................CTCACTTTTTTTTTTTTTTATCG.....................................................................................................................................231.000.00--1.00-----------------------------
......................................................................................................................................................................................................................................AAAGAGCAGCTGCCCGCGG.191.000.00--------------1.00-----------------
.............................................................................................ACTCACTTTTTTTTTTTCTTG........................................................................................................................................211.000.00---1.00----------------------------
.............................................................................................ACTCACTTTTTTTTTTTTACAG.......................................................................................................................................221.000.00------1.00-------------------------
............................................................................................AACTCACTTTTTTTTTTTTTTAAAT.....................................................................................................................................251.000.001.00-------------------------------
.............................................................................................ACTCACTTTTTTTTTTTTTGCTG......................................................................................................................................231.000.00----1.00---------------------------
........................................................................................................TTTTTTTTTACAGCCTAG................................................................................................................................181.000.00----1.00---------------------------

Antisense strand
TGCATCCAATTTCATATTAATAGTAAGTGAAAGTTCAATTAAAAACCATTCTGAAAATCTTATTTGGTATTCAAATTAGCTAAAGTAATGAAAACTCACTTTTTTTTTTTTTTACAGCCTTTTGCTAACACTCCCAAGGGGAAAAGAGAAATTGAAAATGCCAAGTGTATTTCAGTATTACTGCTTTTTCTCCTTCTCAGAACACCGGAGCCGGAGCGATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTT
................................................................................................((((((((((..(((((....(((((((..........))))))).....)))))..)))))....)))))...................................................................................
......................................................................................87...............................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR189785SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343337SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037938(GSM510476)
293Red. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
.........................................................................................GAAAACTCACTTTTTCTTG.............................................................................................................................................. 191.000.00----------------1.00---------------
......................................................................................................................................................................................GCTTTTTCTCCTTCTCATG................................................. 191.000.00----------1.00---------------------
.....................................................................................................TTTTTTTTTTTTACAGCCTGCAG.............................................................................................................................. 231.000.00--------------------1.00-----------
.........................................AAAACCATTCTGAAAATCTGA............................................................................................................................................................................................ 211.000.00------------------1.00-------------
...................................................................................................AGGCTGTAAAAAAAAAAAAAA.................................................................................................................................. 2181.001.00---------------------0.250.12-0.120.12-0.12-0.120.12-
............................................................................................................AAAAGGCTGTAAAAA............................................................................................................................... 1501.001.00------------1.00-------------------
......................................................................................................TTTTTTTTTTTACAGCCTT................................................................................................................................. 191.000.00---------1.00----------------------
..........................................................................ATTAGCTAAAGTAATCCC.............................................................................................................................................................. 181.000.00-------1.00------------------------
....................................................................................................AGGCTGTAAAAAAAAAAAAA.................................................................................................................................. 2090.330.33---------------------0.110.11--------0.11
.......................................................................................................AAGGCTGTAAAAAAAAAA................................................................................................................................. 1880.250.25--------------------------0.12-0.12---
...................................................................................................AAGGCTGTAAAAAAAAAAAAAA................................................................................................................................. 2250.200.20---------------------0.20----------
.....................................................................................................AAGGCTGTAAAAAAAAAAAA................................................................................................................................. 2070.140.14-----------------------0.14--------