| (4) B-CELL | (2) BREAST | (4) CELL-LINE | (4) CERVIX | (1) FIBROBLAST | (2) LIVER | (1) OTHER | (4) SKIN | (1) XRN.ip |
| TGAAATGGGGATAATAGAAGTACTGGGTTGTCCATATAAAGAACTGAAAGTACTACCTCAGCATGATGAATGCCATATGTGGTCTATCAGAGCTAGCTGATTTTGTTGTTATATTTAACAAGCACAGAAAAGCTGATGGGAAACACTGATTACTATGGCTATAGGAAATATTCTGATATATTCTTTTTGTTTCTTCTTAGCTTTTCCTAAGCCCAAATGGGACTGTCAATTATTTGATTCTTATTCTGAG .....................................................................................(((((...(((((..(((((((((((....)))))...)))))).))))).((.....))))))).................................................................................................... ....................................................................................85.................................................................152................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR343335 | SRR343334 | SRR343336 | SRR015360(GSM380325) Plasma B cells (PC137). (B cell) | SRR343337 | SRR015358(GSM380323) NaÌøve B Cell (Naive39). (B cell) | SRR189782 | SRR189785 | SRR040032(GSM532917) G603N. (cervix) | SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | SRR444045(SRX128893) Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR040029(GSM532914) G026T. (cervix) | SRR040009(GSM532894) G727T. (cervix) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR037937(GSM510475) 293cand2. (cell line) | SRR015447(SRR015447) nuclear small RNAs. (breast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577579(Rovira) total RNA. (breast) | SRR033728(GSM497073) MALT (MALT413). (B cell) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) | SRR040024(GSM532909) G613N. (cervix) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR444048(SRX128896) Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................AGCTGATGGGAAACAGGT...................................................................................................... | 18 | 33.00 | 0.00 | 2.00 | 4.00 | 4.00 | 8.00 | 2.00 | 7.00 | - | - | - | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | |
| ..................................................................................................................................AGCTGATGGGAAACAGGTC..................................................................................................... | 19 | 23.00 | 0.00 | 6.00 | 3.00 | 4.00 | 1.00 | 5.00 | - | - | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................AGCTGATGGGAAACAGGTT..................................................................................................... | 19 | 6.00 | 0.00 | 2.00 | 1.00 | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................AGCTGATGGGAAACAGA....................................................................................................... | 17 | 6.00 | 0.00 | 2.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................AAGAACTGAAAGTACTGTCG................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................GAGCTAGCTGATTTTGTATTT............................................................................................................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................GGAAATATTCTGATAAAAG.................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................AAATGGGACTGTCAATTATTTGATT........... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................CAAATGGGACTGTCAATTATTTG.............. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................CATATGTGGTCTATCAGA............................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...AATGGGGATAATAGAATT..................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ....................................................................................................................AACAAGCACAGAAAAGAT.................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................ATTATTTGATTCTTATTCTGAGTCAA | 26 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................TTGTTTCTTCTTAGCTT............................................... | 17 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |
| .................................................................................................................................AAGCTGATGGGAAACA......................................................................................................... | 16 | 7 | 0.14 | 0.14 | - | - | - | - | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGAAATGGGGATAATAGAAGTACTGGGTTGTCCATATAAAGAACTGAAAGTACTACCTCAGCATGATGAATGCCATATGTGGTCTATCAGAGCTAGCTGATTTTGTTGTTATATTTAACAAGCACAGAAAAGCTGATGGGAAACACTGATTACTATGGCTATAGGAAATATTCTGATATATTCTTTTTGTTTCTTCTTAGCTTTTCCTAAGCCCAAATGGGACTGTCAATTATTTGATTCTTATTCTGAG .....................................................................................(((((...(((((..(((((((((((....)))))...)))))).))))).((.....))))))).................................................................................................... ....................................................................................85.................................................................152................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR343335 | SRR343334 | SRR343336 | SRR015360(GSM380325) Plasma B cells (PC137). (B cell) | SRR343337 | SRR015358(GSM380323) NaÌøve B Cell (Naive39). (B cell) | SRR189782 | SRR189785 | SRR040032(GSM532917) G603N. (cervix) | SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR330873(SRX091711) tissue: skin psoriatic involveddisease state:. (skin) | SRR444045(SRX128893) Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin) | SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR040029(GSM532914) G026T. (cervix) | SRR040009(GSM532894) G727T. (cervix) | SRR037876(GSM522374) fibroblasts_cell_culture. (fibroblast) | SRR037937(GSM510475) 293cand2. (cell line) | SRR015447(SRR015447) nuclear small RNAs. (breast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | TAX577579(Rovira) total RNA. (breast) | SRR033728(GSM497073) MALT (MALT413). (B cell) | SRR033730(GSM497075) Lymphoblastic (ALL411). (B cell) | SRR040024(GSM532909) G613N. (cervix) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR444048(SRX128896) Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................AAAGTACTACCTCAGGTAC......................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .............................................GAAAGTACTACCTCATCCT.......................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................AAGCCCAAATGGGACCCA........................ | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .............................................GAAAGTACTACCTCATGCT.......................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................GAAAGTACTACCTCATCCA.......................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................TGAAAGTACTACCTCACAG........................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................TGAAAGTACTACCTCAACAG.......................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................TGAAAGTACTACCTCAATAC.......................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................ATAGGAAATATTCTGATAGCTC.................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |