ID: uc004cry.3_intron_4_0_chrX_7177814_f.3p
GENE: (5)
chrX:7193792-7194041+


(1)
BREAST
(11)
CELL-LINE
(1)
HEART
(1)
KIDNEY
(1)
OTHER

Sense strand
TAAGTCACTTCATAGAGACACAACAGAGACTTACCTTTCTCTGACAGAAGATACCATATTAGGCAATTAACTTGTAATATTTTGTGAATTTTCAAATAGCCTGCTATGATAATAGGTGGATCTTAATCAGAATGGTGGCAGACATACTTAACATTATCTGTGGTCTTTTTTTTCCTCCCTTTTTTTTTTTTTTTTTGCAGGAACACTGAGACTCCGTTCCTGCTTGTCTTGTCCTACCTCCACGTGCACA
............................................................................................................................................................((.(((.((((...............................)))).))).)).........................................
........................................................................................................................................................153......................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189782SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
.............................................................................................................................................................CTGTGGTCTTTTTTTATC...........................................................................185.000.00------5.00--------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTACAG...................................................253.000.00-1.001.00--1.00---------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGGCC..................................................252.000.002.00--------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTAG......................................................232.000.00--2.00------------
............................................................................................................................................................................TCCTCCCTTTTTTTTTAT............................................................182.000.00-------2.00-------
........................................................................................................................................................................................TTTTTTTTTTTTGCAGGAACAGT...........................................232.000.00----------2.00----
...................................................................................................................................................................................TTTTTTTTTTTTTTTTTGCAGGAACTG............................................272.000.001.00-1.00------------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTATT.....................................................232.000.001.00----1.00---------
.......................................................................................................................................................................TTTTTTCCTCCCTTTTTTTTTTTTTTTTG......................................................291.000.00-1.00-------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTTAAT...................................................261.000.00--1.00------------
..........................................................................................................................................................................................TTTTTTTTTTGCAGGAACTG............................................201.000.00---1.00-----------
.................................................................................................................................................................................CCTTTTTTTTTTTTTTTTTGCGTAC................................................251.000.001.00--------------
.................................................................................................................................................................................CCTTTTTTTTTTTTTTTTTGCAACGG...............................................261.000.00---1.00-----------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTTAT....................................................251.000.00--1.00------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTTGCG...................................................261.000.001.00--------------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTCCTG...................................................251.000.00----1.00----------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTAATT.........................................................201.000.00----1.00----------
................................................................................................................................................................................................................AGACTCCGTTCCTGCCAGC.......................191.000.001.00--------------
..........................................................................................................................................................................TTTCCTCCCTTTTTTTTTTTTTTTTG......................................................261.000.00--1.00------------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGGGGC.................................................261.000.001.00--------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTTGCAGCCGG..............................................261.000.001.00--------------
............................................................................................................................................................................TCCTCCCTTTTTTTTTTTTTTTTATG....................................................261.000.00-------1.00-------
.......................................................................................................................................................................................TTTTTTTTTTTTTGCAGGAACAGGGG.........................................261.000.001.00--------------
............................................................................................................................................................................TCCTCCCTTTTTTTTTTCTAG.........................................................211.000.00-1.00-------------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGCAGA.................................................261.000.001.00--------------
.........................................................................................................................................................................TTTTCCTCCCTTTTTTTTTTTTTTTCG......................................................271.000.001.00--------------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTCAT....................................................241.000.00-1.00-------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTAAG....................................................251.000.00-----1.00---------
.........................................................................................................................................................................TTTTCCTCCCTTTTTTTTTTTTTTTTTG.....................................................2821.001.00-1.00-------------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGCAGGG................................................271.000.001.00--------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTCCG.........................................................201.000.00-----1.00---------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTCCAG......................................................221.000.00-----1.00---------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTCACG....................................................241.000.00----1.00----------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTAACA...................................................251.000.00-1.00-------------
.........................................................................................................................................................................TTTTCCTCCCTTTTTTTTTTTTTGG........................................................251.000.00---1.00-----------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTTACAG..................................................261.000.00-----1.00---------
...........................................................................................................................................................................TTCCTCCCTTTTTTTTTTTTTTAG.......................................................241.000.00-1.00-------------
..........................................................................................................................................................................TTTCCTCCCTTTTTTTTTTTTTTTTAAGC...................................................291.000.001.00--------------
........................................................................................................................................................................TTTTTCCTCCCTTTTTTTTTTCAG..........................................................241.000.00-1.00-------------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGAACC.................................................261.000.00---1.00-----------
............................................................................................................................................................................TCCTCCCTTTTTTTTTTTTTTTTTAAAG..................................................281.000.00--1.00------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTTATG...................................................261.000.00-1.00-------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTATG....................................................251.000.00--1.00------------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTCAG.....................................................231.000.00-1.00-------------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGCAGAG................................................271.000.001.00--------------
................................................................................................................................................................................CCCTTTTTTTTTTTTTTTTTGGGGG.................................................251.000.00----1.00----------
...............................................................................................................................................................................TCCCTTTTTTTTTTTTTTTTTGTTGG.................................................261.000.001.00--------------
..........................................................................................................................................................................TTTCCTCCCTTTTTTTTTTTTTTTTGC.....................................................271.000.001.00--------------
.........................................................................................................................................................................TTTTCCTCCCTTTTTTTTCCCC...........................................................221.000.00---1.00-----------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTTATTT..................................................261.000.00----1.00----------
..........................................................................................................................................................................TTTCCTCCCTTTTTTTTTTTTTTAAG......................................................261.000.00-----1.00---------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTGCAGGCGGG.............................................241.000.00---1.00-----------
............................................................................................................................................................................TCCTCCCTTTTTTTTTTTTTTAAGG.....................................................251.000.001.00--------------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTTTAG.....................................................241.000.00--1.00------------
.................................................................................................................................................................................CCTTTTTTTTTTTTTTTTTGCAACAG...............................................261.000.001.00--------------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTCGG.....................................................231.000.00-1.00-------------
................................................................................................................................................................................CCCTTTTTTTTTTTTTTTTTGCGCG.................................................251.000.00---1.00-----------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTTTTTAAG......................................................231.000.00----1.00----------
.............................................................................................................................................................................CCTCCCTTTTTTTTTTAAT..........................................................191.000.00-------1.00-------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTTACTG..................................................261.000.00----1.00----------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTTATTG..................................................261.000.00-1.00-------------
..................................................................................................................................................................................CTTTTTTTTTTTTTTTTTGCACGG................................................241.000.00---1.00-----------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTTTTCAG....................................................241.000.00----1.00----------
..............................................................................................................................................................................CTCCCTTTTTTTTTTTTTCTTG......................................................221.000.00-----1.00---------
............................................................................................................................................................................TCCTCCCTTTTTTTTTTTTTTTTTGC....................................................2620.500.500.50--------------
...............................TACCTTTCTCTGACAGAAGA.......................................................................................................................................................................................................2020.500.50--------------0.50
............................................................................................................................................................................TCCTCCCTTTTTTTTTTTTTTTTTG.....................................................2550.200.20-0.20-------------
....................................................................................................................................................................................TTTTTTTTTTTTTTTTGCAGGAAC..............................................2460.170.170.17--------------
..............................................................................................................................................................TGTGGTCTTTTTTTTCC...........................................................................1760.170.17-------0.17-------
......................................................................................................................................................................................TTTTTTTTTTTTTTGCAGGAAC..............................................2270.140.14---0.14-----------

Antisense strand
TAAGTCACTTCATAGAGACACAACAGAGACTTACCTTTCTCTGACAGAAGATACCATATTAGGCAATTAACTTGTAATATTTTGTGAATTTTCAAATAGCCTGCTATGATAATAGGTGGATCTTAATCAGAATGGTGGCAGACATACTTAACATTATCTGTGGTCTTTTTTTTCCTCCCTTTTTTTTTTTTTTTTTGCAGGAACACTGAGACTCCGTTCCTGCTTGTCTTGTCCTACCTCCACGTGCACA
............................................................................................................................................................((.(((.((((...............................)))).))).)).........................................
........................................................................................................................................................153......................................................210......................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189782SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...........ATAGAGACACAACAGAAGC............................................................................................................................................................................................................................ 192.000.00--------2.00------
...........................................................................................................................................................................TTCCTCCCTTTTTTTTCGGG........................................................... 201.000.00------------1.00--
........................................................................................................................................................................TTTTTCCTCCCTTTTTTTTTGGA........................................................... 231.000.00-----------1.00---
...............................................AAGATACCATATTAGATGC........................................................................................................................................................................................ 191.000.00---------1.00-----
.........................................................................................................................................................................TTTTCCTCCCTTTTTTTTTTTTTTTTTG..................................................... 281.000.00---------1.00-----
.........................................................................................................................................................................................AGTGTTCCTGCAAAAAAAAAAA........................................... 2220.500.50-------------0.50-