ID: uc004crk.2_intron_0_0_chrX_3744771_r.3p
GENE: (2)
chrX:3744721-3744970-


(1)
BRAIN
(1)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
LIVER
(1)
OTHER
(2)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AATGCTGCTGTGAACACGGGTGTTCAATTACCTCCTTGAGACCCTCCTTTCAATTTTTTGGGGTATATATCCAGAAGTAGGATTGCTAGATTTTAAGTGGAATTTTCATTTTCTTTAGTTCCTTTTCAGACTGTTCATTGTTTGTTAGTATTTAGAAATGCAGCTGATTTTTGTGTATTGACTTTTTTTTTTTTTTTCAGTCTCACTCTGTGGCCCAGGCTGGAGTACAGTGGCGCAGTCTGAGTTCACT
............................................................((((....)))).((((.((((..((((((....(((((((...)))))))..))))))))))))))................((((((((.(((((((.......))))))).))))))))....................................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343336DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCTGG.................................................254.000.001.003.00-----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTCTG...................................................233.000.002.001.00-----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTCGG...................................................232.000.001.001.00-----------------------
..................................................................................................................................................................................TGACTTTTTTTTTTTTTTTCGTG.................................................232.000.002.00------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAAACG...............................................232.000.00--1.00----1.00-----------------
.................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTCTTTG................................................252.000.001.001.00-----------------------
......................................................................................................................................................................................................AGTCTCACTCTGTGGCCCAGGCCGA...........................252.000.002.00------------------------
........................................................................AGAAGTAGGATTGCTAGATTTTAAGTG.......................................................................................................................................................2731.671.67------------1.67------------
...............................................................................................................................................................................TATTGACTTTTTTTTTTTTCTTG....................................................231.000.00-1.00-----------------------
.......................................................................................................................................................................................................GTCTCACTCTGTGGCCC..................................1701.001.00-----1.00-------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTCTGG.....................................................211.000.001.00------------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCCTG.................................................251.000.001.00------------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTAGCC.................................................251.000.001.00------------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTCCTG....................................................221.000.00-1.00-----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCTGGG................................................261.000.001.00------------------------
...........................................................................................................................................................................................................................CTGGAGTACAGTGGCGCAGTCCCGG......251.000.001.00------------------------
................................................................ATATATCCAGAAGTAACT........................................................................................................................................................................181.000.00--------1.00----------------
...............................................................................................................................................................................TATTGACTTTTTTTTTTTTTTTCTTTC................................................271.000.00-1.00-----------------------
..................................................................................................................................................................................TGACTTTTTTTTTTTTTTTCAGTCAGGC............................................281.000.001.00------------------------
.................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTCACG.................................................241.000.001.00------------------------
.....................................................................TCCAGAAGTAGGATTCAT...................................................................................................................................................................181.000.00----------------1.00--------
................................................................................................................................................................................ATTGACTTTTTTTTTTTCGGG.....................................................211.000.001.00------------------------
..................................................................................................................................................................................................................TGGCCCAGGCTGGAGTACAGTGGGGAG.............271.000.001.00------------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTCTTG....................................................221.000.00-1.00-----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCTTGG................................................261.000.001.00------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAGGATT..............................................241.000.00-1.00-----------------------
...............................................................................................................................................................................TATTGACTTTTTTTTTTTTCAAG....................................................231.000.00-1.00-----------------------
...............................................................................................................................................................................TATTGACTTTTTTTTTTTTTTTCTCTG................................................271.000.00-1.00-----------------------
.......................................................................................................................................................................................................................CAGGCTGGAGTACAGTGGCGCA.............2201.001.00------------------1.00------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTCTC...................................................231.000.00-1.00-----------------------
...............................................................................................................................................................................TATTGACTTTTTTTTTTTTTTCTG...................................................241.000.001.00------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAACTG...............................................231.000.00-------1.00-----------------
.....................................................................................................................................................................................................................CCCAGGCTGGAGTACAGTGGCGCAGTGCA........291.000.00--------------1.00----------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAACG................................................221.000.00---------------1.00---------
.........................................................................................................................................................................................TTTTTTTTTTTTCAGTCGTTG............................................211.000.00--------1.00----------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTCAGTCTTTTC...........................................241.000.001.00------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAGGGG...............................................231.000.001.00------------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTGAT.......................................................191.000.00-1.00-----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCTTTG................................................261.000.001.00------------------------
..................................................................................................................................................................................TGACTTTTTTTTTTTTTTTCAGG.................................................231.000.001.00------------------------
............................TACCTCCTTGAGACCGC.............................................................................................................................................................................................................171.000.00-------------------1.00-----
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAACT................................................221.000.00--------------------1.00----
..................................................................................................................................................................................TGACTTTTTTTTTTTTTTTCGG..................................................221.000.001.00------------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCATAT................................................221.000.00--1.00----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCGAG.................................................251.000.001.00------------------------
.....................................................................................................................................................................................CTTTTTTTTTTTTTTTCAGTTGAC.............................................241.000.001.00------------------------
.ATGCTGCTGTGAACACGGATG....................................................................................................................................................................................................................................211.000.00-1.00-----------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCATTTG...............................................231.000.00--1.00----------------------
........................................................................................................................................................................................................................AGGCTGGAGTACAGTGGCGCA.............2101.001.00-----1.00-------------------
....................................................................................................................................................................................................................GCCCAGGCTGGAGTACAGTGGCGCA.............2501.001.00-------------1.00-----------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCTTG.................................................251.000.00-1.00-----------------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTCAG...................................................231.000.001.00------------------------
.ATGCTGCTGTGAACACGGGTGTC..................................................................................................................................................................................................................................231.000.00-1.00-----------------------
....................................................................................................................................................................................ACTTTTTTTTTTTTTTTCAAAAG...............................................231.000.00-------1.00-----------------
................................................................................................................................................................................ATTGACTTTTTTTTTTTTTTTCAG..................................................2420.500.500.50------------------------
.............................................................................TAGGATTGCTAGATTTTAAGT........................................................................................................................................................2130.330.33-----------------------0.33-
.............................................................................................................................................................................TGTATTGACTTTTTTTTTTTTT.......................................................2250.200.20-0.20-----------------------
.ATGCTGCTGTGAACACGGGTG....................................................................................................................................................................................................................................2190.110.11------------0.11------------
..................................................................................................................................................................................................................TGGCCCAGGCTGGAGTACAGTGGCGCA.............2790.110.110.11------------------------

Antisense strand
AATGCTGCTGTGAACACGGGTGTTCAATTACCTCCTTGAGACCCTCCTTTCAATTTTTTGGGGTATATATCCAGAAGTAGGATTGCTAGATTTTAAGTGGAATTTTCATTTTCTTTAGTTCCTTTTCAGACTGTTCATTGTTTGTTAGTATTTAGAAATGCAGCTGATTTTTGTGTATTGACTTTTTTTTTTTTTTTCAGTCTCACTCTGTGGCCCAGGCTGGAGTACAGTGGCGCAGTCTGAGTTCACT
............................................................((((....)))).((((.((((..((((((....(((((((...)))))))..))))))))))))))................((((((((.(((((((.......))))))).))))))))....................................................................
...........................................................60..........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343336DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782TAX577741(Rovira)
total RNA. (breast)
SRR040025(GSM532910)
G613T. (cervix)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029125(GSM416754)
U2OS. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.............................................................................................................................................................................TGTATTGACTTTTTTTGAGT......................................................... 203.000.00---3.00---------------------
.....................................................................................................................................................................................................CAGTCTCACTCTGTGGCCCAGGCTGGAGTTCCC.................... 333.000.00-3.00-----------------------
.........................................................................................................................................TTGTTTGTTAGTATTACAG.............................................................................................. 193.000.00----3.00--------------------
.........................................................................................................................................................................................................................GGCTGGAGTACAGTGGCGCAGTCTAGG...... 271.000.001.00------------------------
......................................................................................................................................................................................................................CCAGGCTGGAGTACAGTGGCGCAGTCC......... 271.000.00--------1.00----------------
......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGTCTTT............................................. 231.000.00---------------------1.00---
......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGTTGT.............................................. 221.000.00-----------1.00-------------
..........................................................................................................................................................................................................................GCTGGAGTACAGTGGCGCAGTGTGG....... 251.000.001.00------------------------
.....................................................................................................................................................................................................CTGGGCCACAGAGTGAGACTG................................ 2101.001.00-----1.00-------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTCAGTTTTT............................................. 221.000.00---------1.00---------------
..........................................................................................................................TTTTCAGACTGTTCACCG.............................................................................................................. 181.000.00-----------------1.00-------
......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGTTTTT............................................. 231.000.00---------1.00---------------
...................................................................................................................................................................................GACTTTTTTTTTTTTTTTCGGGT................................................ 231.000.00-----------1.00-------------
......................................................................................................................................................................................................................CCAGGCTGGAGTACAGTGGCGCAGTCTTC....... 291.000.00-1.00-----------------------
.........................................................................................................................................................................................................................GGCTGGAGTACAGTGGCGCAGTGAGC....... 261.000.00-1.00-----------------------