ID: uc004cpi.2_intron_4_0_chrX_601823_f.3p
GENE: (5)
chrX:619320-619569+


(1)
AGO1.ip
(2)
AGO2.ip
(6)
B-CELL
(1)
BRAIN
(11)
BREAST
(37)
CELL-LINE
(2)
FIBROBLAST
(4)
HEART
(5)
HELA
(3)
LIVER
(3)
OTHER
(1)
RRP40.ip
(17)
SKIN
(1)
XRN.ip

Sense strand
CTCAGCCTCCCCAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGAAGGTCTCGATCTCCTGACCTCATGATCCGTCCGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACTGCACTTGGCCTTTTTTTTTTTTTAGATGGAGTTTTGCTCTTGTCGCCCGGGCTGGAGTATAATGGCATGATCTCG
.................................................................................................................................................((((.((..((......(((....)))......))..))))))..............................................................
..............................................................................................................................................143............................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189787GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105752CONTROL(GSM1105752)
small RNA sequencing data. (hela)
SRR029126(GSM416755)
143B. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
...................................................................................................................................................AGTGCTGGGACTACAGGCGAGCC................................................................................2327.000.0022.005.00--------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGAGCC................................................................................2415.000.005.0010.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACTCTG........................................................................296.000.00---6.00------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAGC.................................................................................225.000.003.002.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTAAAC................................................224.000.002.002.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTACG.................................................214.000.004.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGGGGG..................................................................................224.000.003.001.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGGAGTGG.........................................233.000.00----------------3.00-----------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTAGA.........................................................................................................233.000.00--------------------------2.00--------------------------------------------------------------1.00----
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCAGTG..........................................................................273.000.00---3.00------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTGAGCCTCC...........................................................................293.000.002.001.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................AGGCGTGAGCCACTGCACTTGTCC.................................................................243.000.00-3.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCTCC...........................................................................283.000.003.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCTG...............................................................................243.000.00-3.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGACC.............................................................................262.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCAGGGC.........................................................................302.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGGACC..............................................................................252.000.002.00---------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCCCTA.........................................................................................................232.000.00-------------------------2.00--------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCAAC........................................................................................................242.000.00---------------------2.00------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACAGGA........................................................................312.000.002.00---------------------------------------------------------------------------------------------
...................GGGACTACAGGCGCCCGCCACCGCGCCCGGCTA......................................................................................................................................................................................................3302.002.00-----1.001.00---------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCTTT........................................................................................................242.000.00----------1.00-----------1.00-----------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCTC.............................................................................242.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACGACC........................................................................312.000.002.00---------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCAAA........................................................................................................242.000.00-------------------------------------1.00-----------------1.00--------------------------------------
...............................................................................................................................................................ACAGGCGTGAGCCACTGCACTATA...................................................................242.000.00-------------2.00--------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACTGGC........................................................................312.000.002.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGAGCT................................................................................242.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCGGC..............................................................................252.000.001.001.00--------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTGAGCCAGAAG.........................................................................312.000.00-2.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGCGG...............................................................................222.000.00-2.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCGAGGC................................................................................252.000.00-2.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTAAACC...............................................232.000.001.001.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTAGC...................................................192.000.001.001.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCGTGAGCCAGTG..........................................................................312.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGGGG...............................................................................242.000.002.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGCCAG................................................................................242.000.00-2.00--------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTGTTTT..............................................................................262.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGATG...............................................................................242.000.002.00---------------------------------------------------------------------------------------------
..................................................................................TCACCGTGTTAGCCAGGAAGGCTCG...............................................................................................................................................252.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCTA...............................................................................242.000.00-2.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGGCC...............................................................................242.000.002.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAACC................................................................................232.000.001.001.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGTGCT..............................................................................252.000.00-2.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGGC................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGAACC................................................................................211.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGTGCC............................................................................251.000.001.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTTGGCCTTTTTTTTTTTTTTTC.................................................241.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGGGCC................................................................................211.000.001.00---------------------------------------------------------------------------------------------
............................GGCGCCCGCCACCGCGGGG...........................................................................................................................................................................................................191.000.00------------------------------------------------------1.00---------------------------------------
......................ACTACAGGCGCCCGCCACCGCGCTGGC.........................................................................................................................................................................................................271.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................CTGGGACTACAGGCGTGAGCCACTGCACGTTG...................................................................321.000.00---1.00------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCTTA........................................................................................................241.000.00-----------1.00----------------------------------------------------------------------------------
.........................................................................................................................................AGCCTCCCAAAGTGCTGGGACTACAGGGAC...................................................................................301.000.001.00---------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGGG.......................................................................................................................................................................................................171.000.00-------------------------------------------------------------------1.00--------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTTGCG...............................................................................221.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCAGGG..........................................................................291.000.001.00---------------------------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAATTACTG...............................................................................................................................................................................................271.000.00---1.00------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGCACC................................................................................241.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTGGAC...................................................191.000.001.00---------------------------------------------------------------------------------------------
...............................................................................................................................................CCAAAGTGCTGGGACTACAGGCGGGCA................................................................................271.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCACG..............................................................................251.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGATGCG.............................................................................261.000.001.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGAGC.................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCTAG............................................................................271.000.001.00---------------------------------------------------------------------------------------------
...........................................................................................................................................CCTCCCAAAGTGCTGGGACTACAGGGGCG..................................................................................291.000.001.00---------------------------------------------------------------------------------------------
...............AGCTGGGACTACAGGCGCCGGCC....................................................................................................................................................................................................................231.000.00------1.00---------------------------------------------------------------------------------------
......................ACTACAGGCGCCCGCCCACA................................................................................................................................................................................................................201.000.00--------------------------------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................TGCTCTTGTCGCCCGGGCTGGAGCG................251.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGGA..............................................................................251.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCCGG...........................................................................281.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCTAGC...........................................................................281.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGGATA..................................................................................211.000.00------------1.00---------------------------------------------------------------------------------
..............TAGCTGGGACTACAGGCGCCCGCCAGGCC...............................................................................................................................................................................................................291.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCCTTTTTTTTTTTTTGTGT................................................231.000.00------------1.00---------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCAGTG..........................................................................291.000.00-1.00--------------------------------------------------------------------------------------------
.......................................CCGCGCCCGGCTAATTTTTTGTATTTTTATA....................................................................................................................................................................................311.000.00--------------------------------------------1.00-------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGTGGT............................................................................251.000.00---1.00------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGAAT............................................................................................................201.000.00--------------------------------1.00-------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACTGTAG.......................................................................321.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCCCG..................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCAAAG.......................................................................................................251.000.00----------------------------------------1.00-----------------------------------------------------
..............................................................................................................................................CCCAAAGTGCTGGGACTACAGGCGAGCC................................................................................281.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTGGC....................................................181.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................CTGGGACTACAGGCGTGAGCCACGGAG........................................................................271.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GCTGGAGTATAATGGCATGATA...221.000.00----------------------------------------------------------------------------------------1.00-----
........................TACAGGCGCCCGCCACCGCGCCGGCG........................................................................................................................................................................................................261.000.001.00---------------------------------------------------------------------------------------------
.......................CTACAGGCGCCCGCCACCG................................................................................................................................................................................................................1901.001.00--------1.00-------------------------------------------------------------------------------------
.........................ACAGGCGCCCGCCACCGCGCCCGACG.......................................................................................................................................................................................................261.000.001.00---------------------------------------------------------------------------------------------
..................TGGGACTACAGGCGCCCGCCACCGCGCCCGGCT.......................................................................................................................................................................................................3301.001.00-----1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTACAGG...............................................231.000.001.00---------------------------------------------------------------------------------------------
.....................................................TTTTTTGTATTTTTAGTAGAGACGGGGTCAC......................................................................................................................................................................311.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCTCCC...........................................................................261.000.00-1.00--------------------------------------------------------------------------------------------
....................................................................................................AGGTCTCGATCTCCTGACCCC.................................................................................................................................211.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCATAG...........................................................................261.000.00---1.00------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCTAATTTCCTG..............................................................................................................................................................................................261.000.00---1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACGGG.........................................................................281.000.001.00---------------------------------------------------------------------------------------------
.........................ACAGGCGCCCGCCACCGCGCAGG..........................................................................................................................................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCCTTTTTTTTTTCGGC...................................................201.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCCTTTTTTTTTTAAC....................................................191.000.001.00---------------------------------------------------------------------------------------------
...........CAGTAGCTGGGACTACAGGCGCGC.......................................................................................................................................................................................................................241.000.00------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCGTG............................................................................271.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTACTGG...............................................231.000.00-1.00--------------------------------------------------------------------------------------------
............................................................................................AGCCAGGAAGGTCTCGAAA...........................................................................................................................................191.000.00-------------1.00--------------------------------------------------------------------------------
.................CTGGGACTACAGGCGCCGG......................................................................................................................................................................................................................191.000.00-----1.00----------------------------------------------------------------------------------------
...........................................................................................................................................CCTCCCAAAGTGCTGGGACTACACGCG....................................................................................271.000.00---1.00------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCAGC........................................................................................................241.000.00-----------1.00----------------------------------------------------------------------------------
......................................................................................................................................................GCTGGGACTACAGGCGTGAGCCACTGGC........................................................................281.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCCTTTTTTTTTTTTTACC.................................................221.000.001.00---------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCGTGGGG...............................................................................261.000.00-1.00--------------------------------------------------------------------------------------------
...........................AGGCGCCCGCCACCGCGCCCGGCTAACTC..................................................................................................................................................................................................291.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCTAAT.......................................................................................................251.000.00----------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAAC.................................................................................221.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................GTGCTGGGACTACAGGCGTGAGCCACACC.........................................................................291.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CCTTTTTTTTTTTTTAGAATAG.............................................221.000.00-------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................................................TCTTGTCGCCCGGGCTGGAGGGT...............231.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGAGAG..................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTTGGCCTTTTTTTTTTGTC....................................................211.000.00-1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTTTT................................................................................211.000.00--------------------------------------------------1.00-------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTGCT................................................................................241.000.001.00---------------------------------------------------------------------------------------------
................................................................................................................................................CAAAGTGCTGGGACTACAGGCGTAGAA...............................................................................271.000.00------------1.00---------------------------------------------------------------------------------
.......................................................................................................................................................CTGGGACTACAGGCGTGAGCCACTGGGCT......................................................................291.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................TTTTTTTTTTTTAGATGCTGC...........................................211.000.00---------------------------------------------------1.00------------------------------------------
........................................................................AGACGGGGTTTCACCGTGTAACC...........................................................................................................................................................231.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................................................GGCCTTTTTTTTTTTTTACTGG...............................................221.000.001.00---------------------------------------------------------------------------------------------
....................................................................GTAGAGACGGGGTTTCAGCA..................................................................................................................................................................201.000.00------1.00---------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCGAAC....................................................................................................................................................................................................201.000.00---1.00------------------------------------------------------------------------------------------
................................................................................................................................................CAAAGTGCTGGGACTACAGGAGAA..................................................................................241.000.00-1.00--------------------------------------------------------------------------------------------
.....................................................TTTTTTGTATTTTTAGTAGAGACGGGGTGC.......................................................................................................................................................................301.000.00-1.00--------------------------------------------------------------------------------------------
..............................................................................................................................................CCCAAAGTGCTGGGACTACAGGCGAACC................................................................................281.000.001.00---------------------------------------------------------------------------------------------
......................................................................AGAGACGGGGTTTCACCGGGTC..............................................................................................................................................................221.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................CTGGGACTACAGGCGTGAGCCTACC..........................................................................251.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTCTCC.................................................211.000.001.00---------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCGAACC................................................................................251.000.00-1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTACGAG...............................................231.000.001.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTGAGCCACTGC.........................................................................3101.001.00---------1.00------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTTGGCCTTTTTTTTTTTTAAAC.................................................241.000.00-1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGGTG.................................................................................231.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTACC................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCCTTTTTTTTTTTTCAG..................................................211.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCTAG............................................................................251.000.00-1.00--------------------------------------------------------------------------------------------
...................GGGACTACAGGCGCCCGCAAA..................................................................................................................................................................................................................211.000.00---------------------------------------------1.00------------------------------------------------
...........................................................................................................................................................GACTACAGGCGTGAGCCACTGCATA......................................................................251.000.00---------------------------------------------------------------------------------1.00------------
...............................................................................................................................................................ACAGGCGTGAGCCACTGCACTTGGCCGGGT.............................................................301.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACTTTAG.......................................................................321.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TTGGCCTTTTTTTTTTTAG....................................................191.000.00-1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTGTTC...................................................191.000.001.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................................ACTTGGCCTTTTTTTTTTTTTAAAC................................................251.000.00-1.00--------------------------------------------------------------------------------------------
.............................................................ATTTTTAGTAGAGACGGGGTTTGCCG...................................................................................................................................................................261.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTTATC...............................................................................241.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCCCACAG.....................................................................................................271.000.00---1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGTAG.............................................................................241.000.001.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGAAAC................................................................................241.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAGCT................................................................................231.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTAAC................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGGGCG..................................................................................211.000.00-1.00--------------------------------------------------------------------------------------------
...............................................................................GTTTCACCGTGTTAGCCAGGAAGG...................................................................................................................................................2401.001.00-----------------------------------------------------------1.00----------------------------------
.................................................................................................................................................................................ACTTGGCCTTTTTTTTTTTTTTTAC................................................251.000.001.00---------------------------------------------------------------------------------------------
...........CAGTAGCTGGGACTACAGGC...........................................................................................................................................................................................................................2001.001.00---------1.00------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAGGG................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTCACC.................................................211.000.00-1.00--------------------------------------------------------------------------------------------
.........................................................................................................................................AGCCTCCCAAAGTGCTGGGACTACAGGCGCGCA................................................................................331.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................CTGGGACTACAGGCGTGAGCCACTGGAG.......................................................................281.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCGAGC.................................................................................241.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACGGAT........................................................................291.000.001.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGGGT...................................................................................211.000.00--------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACTGCAG.......................................................................321.000.001.00---------------------------------------------------------------------------------------------
........................................................................................................................................................TGGGACTACAGGCGTGAGCCACTGCATG......................................................................281.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGGCCT..............................................................................251.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................TGTATTTTTAGTAGAGACGGGGTTTGTAG...................................................................................................................................................................291.000.00----------------------------------------------1.00-----------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGGACG..................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGAGCA................................................................................241.000.00-1.00--------------------------------------------------------------------------------------------
...............................................................................GTTTCACCGTGTTAGCCAGGAAAGA..................................................................................................................................................251.000.00----------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCTC...............................................................................241.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGGAAG..................................................................................211.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCAAA..........................................................................................................221.000.00---------------------------------1.00------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACGTG.........................................................................281.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCCCG..................................................................................211.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTCTTA.................................................211.000.001.00---------------------------------------------------------------------------------------------
...............AGCTGGGACTACAGGCGCCGCAG....................................................................................................................................................................................................................231.000.001.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................AGGCGTGAGCCACTGCACTATA...................................................................221.000.00-------------1.00--------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACTGGGCG......................................................................311.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCC................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCAATC...........................................................................281.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCTGCG..........................................................................291.000.00-1.00--------------------------------------------------------------------------------------------
...............................GCCCGCCACCGCGCCCGCGCG......................................................................................................................................................................................................211.000.00------------------------------------------------------------------------------------------1.00---
..........................................................................................................................TGATCCGTCCGCCTCAGCCTATTA........................................................................................................241.000.00-----------1.00----------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCCGTG.................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGCCTG..............................................................................251.000.001.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGGGCG..................................................................................221.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAACT................................................................................231.000.001.00---------------------------------------------------------------------------------------------
............................................................................................................................................................................ACTGCACTTGGCCTTTGTTT..........................................................201.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGAAA............................................................................................................201.000.00-----------1.00----------------------------------------------------------------------------------
........................................................................................................................................................................................................................................TATAATGGCATGATCAAAC191.000.00----------------------------------------------------------------------------------1.00-----------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACACTG........................................................................291.000.00--------------------------------------------------------------------------------------------1.00-
............AGTAGCTGGGACTACAGGCGCCCGCCCCGC................................................................................................................................................................................................................301.000.001.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTAAAC..................................................201.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGTCGCCCGGGCTGGAGCGCG..............211.000.00-1.00--------------------------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCTTTT.......................................................................................................251.000.00-------------------------------------------------1.00--------------------------------------------
...............................................................................................................................................................ACAGGCGTGAGCCACTGCACTTGGCCGGAC.............................................................301.000.001.00---------------------------------------------------------------------------------------------
......................ACTACAGGCGCCCGCCAAAT................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------------1.00-------
............................................................................................................................................................ACTACAGGCGTGAGCCACTGCAGTGG....................................................................261.000.001.00---------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTAAC................................................................................241.000.001.00---------------------------------------------------------------------------------------------
..................................................................TAGTAGAGACGGGGTTTCAGCTC.................................................................................................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGTGG.............................................................................241.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGTACC..............................................................................251.000.00---1.00------------------------------------------------------------------------------------------
...........................AGGCGCCCGCCACCGCGCCCGGCTAAGTGT.................................................................................................................................................................................................301.000.00-1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................AAGTGCTGGGACTACAGGCGTGAGC...............................................................................2501.001.00----1.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGTAA.............................................................................241.000.00-------------------------------------------------------------------------------------1.00--------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGCCACACC.........................................................................281.000.001.00---------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGGT................................................................................231.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGGCGAGCG................................................................................251.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGAGCCACAACG........................................................................311.000.001.00---------------------------------------------------------------------------------------------
............................................................................................................................................................ACTACAGGCGTGAGCCACTGCACTTGGCC.................................................................2940.500.500.50---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CGGGCTGGAGTATAATGGCATGATCTC.2720.500.50---------------------------------------------------------------------------------------------0.50
......................................................................................................................................................................................................AGATGGAGTTTTGCTCTTGTCGCCCGGGCTGG....................3240.250.25-0.25--------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGCCTTTTTTTTTTTTTAG..................................................2070.140.140.14---------------------------------------------------------------------------------------------

Antisense strand
CTCAGCCTCCCCAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGAAGGTCTCGATCTCCTGACCTCATGATCCGTCCGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACTGCACTTGGCCTTTTTTTTTTTTTAGATGGAGTTTTGCTCTTGTCGCCCGGGCTGGAGTATAATGGCATGATCTCG
.................................................................................................................................................((((.((..((......(((....)))......))..))))))..............................................................
..............................................................................................................................................143............................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189787GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR029124(GSM416753)
HeLa. (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925PAZD5SRR037937(GSM510475)
293cand2. (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038855(GSM458538)
D10. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105752CONTROL(GSM1105752)
small RNA sequencing data. (hela)
SRR029126(GSM416755)
143B. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
..................................GCCGGGCGCGGTGGCG........................................................................................................................................................................................................ 16031.0031.00--16.00-5.00--8.001.001.00------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCC....................................................................................................................................................................................................... 1726.000.00--4.00-7.003.005.00-4.002.00-------------------1.00----------------------------------------------------------------
..................................CGCCACCGCGCCCGGCCGGG.................................................................................................................................................................................................... 2011.000.00--------------------1.00-1.002.00----1.00-1.00-------------------------1.001.00-----------1.00-----1.00-------1.00----------
..................................CGCCACCGCGCCCGGCCT...................................................................................................................................................................................................... 187.000.00--------------2.00-------------------1.00-----------------1.00-------1.00-----1.00-----1.00---------------------
..................................CGCCACCGCGCCCGGCCGAA.................................................................................................................................................................................................... 205.000.00-----------1.00-----2.00---------1.00--------1.00---------------------------------------------------------
..................................CGCCACCGCGCCCGGCAA...................................................................................................................................................................................................... 183.000.00---------------------------1.00--1.00-----------------------------------------------------1.00---------
..................................CGCCACCGCGCCCGGCCATC.................................................................................................................................................................................................... 203.000.00---------------3.00------------------------------------------------------------------------------
.......................CTACAGGCGCCCGCCAGC................................................................................................................................................................................................................. 183.000.00-----2.00---1.00------------------------------------------------------------------------------------
...............................GCCCGCCACCGCGCCCGGCTAAACCG................................................................................................................................................................................................. 262.000.002.00---------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCCTTG.................................................................................................................................................................................................... 202.000.00--------------------1.00----------1.00--------------------------------------------------------------
..............................................................................................................................................................TACAGGCGTGAGCCACTGCACCCC.................................................................... 242.000.002.00---------------------------------------------------------------------------------------------
.....................................................................................................GGTCTCGATCTCCTGACCTCACTGG............................................................................................................................ 252.000.00-2.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGTGACCGG............................................................................. 262.000.002.00---------------------------------------------------------------------------------------------
...............................GCCCGCCACCGCGCCCGGCTAATTACCA............................................................................................................................................................................................... 282.000.002.00---------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCCGGC.................................................................................................................................................................................................... 202.000.00----------2.00-----------------------------------------------------------------------------------
................................GCCGGGCGCGGTGGCGGG........................................................................................................................................................................................................ 1802.002.00--1.00-1.00-----------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCCGTT.................................................................................................................................................................................................... 202.000.00-----------------------------------------------1.00--------------------------------1.00-------------
...............................................................................................................................................TCACGCCTGTAGTCCCAGCACTTTGG................................................................................. 2601.001.00-----1.00----------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCCTT..................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------1.00--------------
..................................................................................................................................................................................................................GCTCTTGTCGCCCGGTCTG..................... 191.000.00-------------------------------------------------------------1.00--------------------------------
.........................................................................................................TCGATCTCCTGACCTCATGATCCGA........................................................................................................................ 251.000.00----1.00-----------------------------------------------------------------------------------------
...................................................................................................................................CGCCTCAGCCTCCCAAAGTGCTGGCCGC........................................................................................... 281.000.00-------------------1.00--------------------------------------------------------------------------
..........................................................................................................................TGATCCGTCCGCCTCAGCCTCCCCCG...................................................................................................... 261.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................TGCTGGGACTACAGGCGTGAGTA.............................................................................. 231.000.00------------------1.00---------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTGGAG................................................................................................................................................................................................... 231.000.00-1.00--------------------------------------------------------------------------------------------
....GCCTCCCCAGTAGCTGGGACTCGAT............................................................................................................................................................................................................................. 251.000.00-1.00--------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCTAACGGG................................................................................................................................................................................................. 231.000.00-1.00--------------------------------------------------------------------------------------------
......................................................................................................GTCTCGATCTCCTGACCTCAGGCG............................................................................................................................ 241.000.00-1.00--------------------------------------------------------------------------------------------
..............................CGCCCGCCACCGCGCCCGGCTAATGCTG................................................................................................................................................................................................ 281.000.001.00---------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCTAATTTTA................................................................................................................................................................................................ 241.000.00---------------------------------------------------------------------------------------1.00------
........................................................................................................................................................................................................................GTCGCCCGGGCTGGAGTCCT.............. 201.000.00-1.00--------------------------------------------------------------------------------------------
.......................................................................................................TCTCGATCTCCTGACCTCATGATCCGAA....................................................................................................................... 281.000.00-----------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................GGCGTGAGCCACTGCACTTGGCCTCG.............................................................. 261.000.001.00---------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCTATA.................................................................................................................................................................................................... 201.000.00--------------------------------------------------------------1.00-------------------------------
................................CCCGCCACCGCGCCCGGCGTCG.................................................................................................................................................................................................... 221.000.00----------1.00-----------------------------------------------------------------------------------
...............................GCCCGCCACCGCGCCCGGCTAACCG.................................................................................................................................................................................................. 251.000.001.00---------------------------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAATGA.................................................................................................................................................................................................. 241.000.00-1.00--------------------------------------------------------------------------------------------
......................................................................................................................................................GCTGGGACTACAGGCGTGAGCCTTG........................................................................... 251.000.00---1.00------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCCCGG.................................................................................................................................................................................................... 201.000.00-------------------------------1.00--------------------------------------------------------------
...................GGGACTACAGGCGCCCGCCACCGCGCCCGTG........................................................................................................................................................................................................ 311.000.00-------------------------------------------------------------------------1.00--------------------
................................CCCGCCACCGCGCCCGGCTAAGGCG................................................................................................................................................................................................. 251.000.00-1.00--------------------------------------------------------------------------------------------
.....................................................................................................GGTCTCGATCTCCTGACCTCATCTGG........................................................................................................................... 261.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................CTGGGACTACAGGCGTATC................................................................................ 191.000.00------------------------------------------1.00---------------------------------------------------
..............................CGCCCGCCACCGCGCCCGGCTAAGCTG................................................................................................................................................................................................. 271.000.00-1.00--------------------------------------------------------------------------------------------
...................................GCCACCGCGCCCGGCTAATCAG................................................................................................................................................................................................. 221.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................AAGGTCTCGATCTCCTGACCTGGCT.............................................................................................................................. 251.000.00-1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................AAAGTGCTGGGACTACAGTG..................................................................................... 201.000.00---------1.00------------------------------------------------------------------------------------
..............................GCCGGGCGCGGTGGCGGGCG........................................................................................................................................................................................................ 2001.001.00--------1.00-------------------------------------------------------------------------------------
.............GTAGCTGGGACTACAGGCGCCCGCCCCGG................................................................................................................................................................................................................ 291.000.00----1.00-----------------------------------------------------------------------------------------
....................GGACTACAGGCGCCCGCCACCGGGG............................................................................................................................................................................................................. 251.000.00-----------------------------------------------------------------1.00----------------------------
..............................CGCCCGCCACCGCGCCCGGCTAG..................................................................................................................................................................................................... 231.000.00---------------------------------------------------------------1.00------------------------------
.............................................CCGGCTAATTTTTTGTATTTCGGC..................................................................................................................................................................................... 241.000.00-1.00--------------------------------------------------------------------------------------------
..................................................................................................GAAGGTCTCGATCTCCTGGC.................................................................................................................................... 201.000.00-----------------------------------------------------1.00----------------------------------------
.................CTGGGACTACAGGCGCCCGCCACCGGGGA............................................................................................................................................................................................................ 291.000.00-----------------------------------------------------------------------------1.00----------------
................................................................................................................................GTCCGCCTCAGCCTCCCACACG.................................................................................................... 221.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGTCGCCCGGGCTGGAGTATAGAGA.......... 251.000.00-1.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................TTTTTTAGATGGAGTTTTGCAG.................................... 221.000.00-----------------------------------1.00----------------------------------------------------------
..................TGGGACTACAGGCGCCCGCCATTGT............................................................................................................................................................................................................... 251.000.00------------------------------------------------------------------------------1.00---------------
.....................................................................................CCGTGTTAGCCAGGAGGGG.................................................................................................................................................. 191.000.00------------------------1.00---------------------------------------------------------------------
.........................ACAGGCGCCCGCCACCCCAT............................................................................................................................................................................................................. 201.000.00--------------------------------------------------------------------1.00-------------------------
......................................................................................................GTCTCGATCTCCTGACCTCATGGCG........................................................................................................................... 251.000.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................AGTGCTGGGACTACAGGCGAAAT................................................................................ 231.000.00----------------------------------------------------------------------------1.00-----------------
...................................................................................CACCGTGTTAGCCAGGAAGGTTA................................................................................................................................................ 231.000.00------------------------1.00---------------------------------------------------------------------
........................................................................................................CTCGATCTCCTGACCTCATGATCCG......................................................................................................................... 251.000.00----1.00-----------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCAGAA.................................................................................................................................................................................................... 201.000.00------------------1.00---------------------------------------------------------------------------
......................................................................................................................................................GCTGGGACTACAGGCGTGAGCCCC............................................................................ 241.000.001.00---------------------------------------------------------------------------------------------
.....................................................................................................GGTCTCGATCTCCTGACCTCATCTTG........................................................................................................................... 261.000.00-1.00--------------------------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCTT...................................................................................................................................................................................................... 181.000.00--------------1.00-------------------------------------------------------------------------------
..............................................CGGCTAATTTTTTGTATTTTTAGTAGCG................................................................................................................................................................................ 281.000.00--------------------------------------------------------------------------1.00-------------------
..............................CGCCCGCCACCGCGCCCGGCTGCTG................................................................................................................................................................................................... 251.000.00-1.00--------------------------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAATTGGCT............................................................................................................................................................................................... 271.000.00-1.00--------------------------------------------------------------------------------------------
.......................................CCGCGCCCGGCTAATTGGGG............................................................................................................................................................................................... 201.000.001.00---------------------------------------------------------------------------------------------
...............................GCCCGCCACCGCGCCCGGCTAATTTTTTACA............................................................................................................................................................................................ 311.000.001.00---------------------------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAATGT.................................................................................................................................................................................................. 241.000.00-1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GCTCTTGTCGCCCGGTCCG..................... 191.000.00---------------------------------------1.00------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAATGGTC................................................................................................................................................................................................ 261.000.001.00---------------------------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAAGGGC................................................................................................................................................................................................. 251.000.00-1.00--------------------------------------------------------------------------------------------
...................GGGACTACAGGCGCCCGGAGT.................................................................................................................................................................................................................. 211.000.00------------------------------------------------1.00---------------------------------------------
................................CCCGCCACCGCGCCCGGCTAATGGG................................................................................................................................................................................................. 251.000.00-1.00--------------------------------------------------------------------------------------------
......................................................................................................................CTCATGATCCGTCCGCCTG................................................................................................................. 191.000.00----------------------------------------------------------------1.00-----------------------------
................................CCCGCCACCGCGCCCGGCTGCCC................................................................................................................................................................................................... 231.000.001.00---------------------------------------------------------------------------------------------
................GCTGGGACTACAGGCGCCCGCCAA.................................................................................................................................................................................................................. 241.000.00-----1.00----------------------------------------------------------------------------------------
................................................................................................................................GTCCGCCTCAGCCTCCCAAAGTGCTCAC.............................................................................................. 281.000.001.00---------------------------------------------------------------------------------------------
................................CCCGCCACCGCGCCCGGCTAAGCCC................................................................................................................................................................................................. 251.000.00-1.00--------------------------------------------------------------------------------------------
.....................GACTACAGGCGCCCGCCACCGCGCCCGGCTGC..................................................................................................................................................................................................... 321.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................TCTCGATCTCCTGACCTCATGAGCAT......................................................................................................................... 261.000.00-----------------------------1.00----------------------------------------------------------------
.............................................................................GGGTTTCACCGTGTTAGCCAGGAAGGTCTCGGC............................................................................................................................................ 331.000.00-------------------1.00--------------------------------------------------------------------------
..................................CGCCACCGCGCCCGGCTGCC.................................................................................................................................................................................................... 201.000.00----------------------------------------------------------------------1.00-----------------------
..................................CGCCACCGCGCCCGGCTCATT................................................................................................................................................................................................... 211.000.00------------1.00---------------------------------------------------------------------------------
....................GGACTACAGGCGCCCGCCACCGCGTCTG.......................................................................................................................................................................................................... 281.000.00----------------------------1.00-----------------------------------------------------------------
................................CCCGCCACCGCGCCCGGGAA...................................................................................................................................................................................................... 201.000.00-------------------------------------------------------------------------------------------1.00--
...................GGGACTACAGGCGCCCGCCAGGC................................................................................................................................................................................................................ 231.000.00----1.00-----------------------------------------------------------------------------------------
..............................................................................................................................TTGGGAGGCTGAGGCGGACGG....................................................................................................... 2101.001.00-----------------------------------------------------------------------1.00----------------------
............................GGCGCCCGCCACCGCGCCCGGCTAATCCGC................................................................................................................................................................................................ 301.000.001.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................AGCCCGGGCGACAAGAGCAAAACTCCATC...................... 2940.250.250.25---------------------------------------------------------------------------------------------