ID: uc004cmu.2_intron_8_0_chr9_140327527_f
GENE: (9)
chr9:140327477-140327706+


(5)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(6)
CELL-LINE 		(6)
CERVIX 		(3)
LIVER 		(7)
OTHER 		(6)
SKIN

Sense strand
GCAGAGGCCCCAGGTGGAGCAAGTTGGCAAACAGGCTCCTCTCTCCCCAGGTATGGGCGTCCTCAGCGGCGGGGTCCCCGGGTGAAGGAGGAAGCTGCTGGTGCATGGGTGCCGGCTGCCCTCCACCCACAGGGCCCACTTTGGTGGTAGTGGCTGTGTCAGTCTTGCTCTGTCCTACAGGGCTGCCGGCAATGGGGGGGCCTGGCCCCGGCCCCTGTGAGGACCCCGCG
..................................................((((.(((((((((.((..((((...)))).))....)))))...)))).))))..............................................................................................................................
..................................................51.....................................................106..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189783SRR189785SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM532877(GSM532877)
G691N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		GSM532872(GSM532872)
G652T. (cervix)		SRR343336SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR343335SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)
........................................................GCGTCCTCAGCGGCGGACC...........................................................................................................................................................1911.000.007.00----1.00-1.00----------1.00-1.00-----------------
........................................................GCGTCCTCAGCGGCGGACCG..........................................................................................................................................................207.000.005.00-1.001.00----------------------------------
.........................................................CGTCCTCAGCGGCGGACCG..........................................................................................................................................................1924.501.502.50-0.501.00-----------------------------0.50----
...........................................................................................AAGCTGCTGGTGCATAC..........................................................................................................................173.000.00-3.00------------------------------------
........................................................GCGTCCTCAGCGGCGGAC............................................................................................................................................................183.000.001.00--1.00-1.00--------------------------------
........................................................GCGTCCTCAGCGGCGGCCCG..........................................................................................................................................................203.000.002.00------------1.00------------------------
........................................................GCGTCCTCAGCGGCGGA.............................................................................................................................................................173.000.002.00----------------1.00--------------------
........................................................GCGTCCTCAGCGGCGGACG...........................................................................................................................................................192.000.002.00-------------------------------------
.........................................................CGTCCTCAGCGGCGG..............................................................................................................................................................1521.501.50------1.00-----------------------------0.50-
........................................................GCGTCCTCAGCGGCG...............................................................................................................................................................1521.501.500.50-----0.50-----------------------0.50-------
.........................................................CGTCCTCAGCGGCGGACC...........................................................................................................................................................1821.501.500.50-0.50--------------------------------0.50--
........................................................GCGTCCTCAGCGGCGGGCCGG.........................................................................................................................................................2111.001.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGGACA...........................................................................................................................................................191.000.00----1.00---------------------------------
..................................................................................................................................................................................AGGGCTGCCGGCAATGGG..................................1811.001.00--------------------------1.00-----------
.........................................................CGTCCTCAGCGGCGGACA...........................................................................................................................................................1821.001.500.50-0.50-----------------------------------
........................................................GCGTCCTCAGCGGCGGAGCG..........................................................................................................................................................201.000.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGGCCC...........................................................................................................................................................191.000.001.00-------------------------------------
........CCCAGGTGGAGCAAGTTGA...........................................................................................................................................................................................................191.000.00---------------------1.00----------------
...........................................................TCCTCAGCGGCGGGGAGCT........................................................................................................................................................191.000.00------------------------1.00-------------
.................................................................................................................................................................................................GGGGGGGCCTGGCCCAC....................171.000.00----------1.00---------------------------
........................................................................................................................................CACTTTGGTGGTAGTGGCTGT.........................................................................2111.001.00------------1.00-------------------------
.......................................TCTCTCCCCAGGTATGTGG............................................................................................................................................................................191.000.00---------1.00----------------------------
..................................................................CGGCGGGGTCCCCGGGGA..................................................................................................................................................181.000.00---------------------------1.00----------
........................................................GCGTCCTCAGCGGCGGATC...........................................................................................................................................................191.000.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGGGCCC..........................................................................................................................................................2011.001.001.00-------------------------------------
......................................................................................GGAGGAAGCTGCTGGTAC..............................................................................................................................181.000.00----------------1.00---------------------
........................................................GCGTCCTCAGCGGCGGACTG..........................................................................................................................................................201.000.001.00-------------------------------------
.........................................................CGTCCTCAGCGGCGGA.............................................................................................................................................................1621.001.50------0.50------------------------0.50------
................................................................................................................................................................................................TGGGGGGGCCTGGCCACC....................181.000.00-----------------------------1.00--------
........................................................GCGTCCTCAGCGGCGGTTC...........................................................................................................................................................191.000.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGGTCC...........................................................................................................................................................191.000.001.00-------------------------------------
..........................................................GTCCTCAGCGGCGGGCCGG.........................................................................................................................................................191.000.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGGACT...........................................................................................................................................................191.000.00----1.00---------------------------------
........................................................GCGTCCTCAGCGGCGGG.............................................................................................................................................................1711.001.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGGGCCCG.........................................................................................................................................................2111.001.001.00-------------------------------------
.........................................................CGTCCTCAGCGGCGGAC............................................................................................................................................................1721.001.50--------------------------------0.50-0.50---
........................................................GCGTCCTCAGCGGCGGATG...........................................................................................................................................................191.000.001.00-------------------------------------
........................................................GCGTCCTCAGCGGCGAAC............................................................................................................................................................1820.501.500.50-------------------------------------
........................................................GCGTCCTCAGCGGCGAACG...........................................................................................................................................................1920.501.500.50-------------------------------------
.........................................................CGTCCTCAGCGGCGGACCT..........................................................................................................................................................1920.501.50--0.50-----------------------------------
........................................................GCGTCCTCAGCGGCGCAC............................................................................................................................................................1820.501.500.50-------------------------------------
...................................................................................GAAGGAGGAAGCTGCTGG.................................................................................................................................1830.330.33-------------------------------------0.33

Antisense strand
GCAGAGGCCCCAGGTGGAGCAAGTTGGCAAACAGGCTCCTCTCTCCCCAGGTATGGGCGTCCTCAGCGGCGGGGTCCCCGGGTGAAGGAGGAAGCTGCTGGTGCATGGGTGCCGGCTGCCCTCCACCCACAGGGCCCACTTTGGTGGTAGTGGCTGTGTCAGTCTTGCTCTGTCCTACAGGGCTGCCGGCAATGGGGGGGCCTGGCCCCGGCCCCTGTGAGGACCCCGCG
..................................................((((.(((((((((.((..((((...)))).))....)))))...)))).))))..............................................................................................................................
..................................................51.....................................................106..........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189783SRR189785SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM532877(GSM532877)
G691N. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR040036(GSM532921)
G243N. (cervix)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		GSM532872(GSM532872)
G652T. (cervix)		SRR343336SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR343335SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040008(GSM532893)
G727N. (cervix)
..................................................................CGGCGGGGTCCCCGGGG................................................................................................................................................... 172.000.00----------------------1.00-----1.00---------
...........................CAAACAGGCTCCTCTGTAA........................................................................................................................................................................................ 191.000.00-----------1.00--------------------------
..................................................................CGGCGGGGTCCCCGGGGCC................................................................................................................................................. 191.000.00---------------1.00----------------------
...................................................................................GAAGGAGGAAGCTGCTCCTC............................................................................................................................... 201.000.00-------------------1.00------------------
..................................................................CGGCGGGGTCCCCGGGGG.................................................................................................................................................. 181.000.00--------1.00-----------------------------
...........................CAAACAGGCTCCTCTGAA......................................................................................................................................................................................... 181.000.00-----------------------1.00--------------
...................................................................GGCGGGGTCCCCGGGTC.................................................................................................................................................. 171.000.00--------------1.00-----------------------
.........................................................CGTCCTCAGCGGCGGGCT........................................................................................................................................................... 1821.000.00-------------------------1.00------------