ID: uc004cmr.2_intron_6_0_chr9_140271734_r.3p
GENE: (4)
chr9:140271684-140271933-


(1)
AGO1.ip
(3)
B-CELL
(3)
BREAST
(20)
CELL-LINE
(2)
CERVIX
(7)
HEART
(1)
HELA
(1)
KIDNEY
(1)
LIVER
(3)
OTHER
(25)
SKIN

Sense strand
TTTGAAATCTGCCTTTCCCTTTTTTTTTTTTTTTTTAGAGACAGAGTCTTGTTCTGTCACCCAGGCTGGAGTGCAATGGCACAATCTCAGCTCACTACAACCTCCGCCTCCCGGGTTCAAAGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCTCCACTATGCTGGCTAATTTTTTGTATTTTTGGTAGAGACGGAGTTCCGCTATGTTGCACAGACTTGTCTTGAACTCCTGAGCTCA
.....................................................(((..((((((((.((((((...((((.........)).))...))..))))))))...))))....(((.....)))....)))................................................................................................................
..................................................51......................................................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189786TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR343336SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.....................................................................................................................CAAAGGATTCTCCTGTTG...................................................................................................................1895.000.0094.00------------------------------------1.00----------------------------------
................CCCTTTTTTTTTTTTTTTTTAAAAG.................................................................................................................................................................................................................2514.000.00-6.00-8.00--------------------------------------------------------------------
...................................................................................................................................................................................................................................CTTGTCTTGAACTCCTGAGCTCTG2410.000.00---------3.002.00----------1.00----2.00-----------1.00---------------1.00-----------------
...............TCCCTTTTTTTTTTTTTTTTTAAATG.................................................................................................................................................................................................................269.000.00-7.00--1.00--1.00----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTCCAG......................................................................................................................................................................................................................246.000.00-2.00-2.00-2.00------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCTTG..................................................................................................................................................................................................................276.000.00-1.00--2.002.00-1.00----------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAAACT.................................................................................................................................................................................................................255.000.00-3.00--2.00-------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAAATG.................................................................................................................................................................................................................274.000.00-2.00-2.00--------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTCTTG...................................................................................................................................................................................................................264.000.00----2.001.00-1.00----------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTATTTG.................................................................................................................................................................................................................264.000.00-1.001.002.00--------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTCCAG..................................................................................................................................................................................................................283.000.00---2.00-1.00------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTAAC.....................................................................................................................................................................................................................243.000.00--2.00---1.00-----------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAAAG..................................................................................................................................................................................................................253.000.00---2.001.00-------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTCG...................................................................................................................183.000.003.00-----------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAAACG.................................................................................................................................................................................................................263.000.00-1.001.00-1.00-------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTATTT..................................................................................................................................................................................................................252.000.00-1.00-1.00--------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTAG...................................................................................................................182.000.002.00-----------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTTGG..................................................................................................................192.000.00-------------------------------------------------------------1.00-----1.00----
.............TTTCCCTTTTTTTTTTTTTTTTTGTTG..................................................................................................................................................................................................................272.000.00--2.00---------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAAAG..................................................................................................................................................................................................................262.000.00-2.00----------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTAAAG...................................................................................................................................................................................................................272.000.00-----2.00------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTCCTG......................................................................................................................................................................................................................232.000.00----1.001.00------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAAAAG.................................................................................................................................................................................................................272.000.00--1.001.00--------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCTTT..................................................................................................................................................................................................................272.000.00----2.00-------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTTA...................................................................................................................182.000.002.00-----------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTGG...................................................................................................................182.000.002.00-----------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTATTG..................................................................................................................................................................................................................252.000.00-----2.00------------------------------------------------------------------
........................................................................................................................AGGATTCTCCTGCCTCAGCCCTC...........................................................................................................232.000.00------2.00-----------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAACCT.................................................................................................................................................................................................................252.000.00---1.00-1.00------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTCCAG....................................................................................................................................................................................................................262.000.00----2.00-------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTCCG....................................................................................................................................................................................................................252.000.00----2.00-------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTAAAG..................................................................................................................................................................................................................272.000.00--1.001.00--------------------------------------------------------------------
...........CCTTTCCCTTTTTTTTTTTCG..........................................................................................................................................................................................................................211.000.00----1.00-------------------------------------------------------------------
.....................................................................AGTGCAATGGCACAATCTCAGCTCACAGCC.......................................................................................................................................................301.000.00--1.00---------------------------------------------------------------------
...........CCTTTCCCTTTTTTTTTTTTTTTGCTG....................................................................................................................................................................................................................271.000.00-------1.00----------------------------------------------------------------
........................................................................................................CGCCTCCCGGGTTCAAAGGACT............................................................................................................................221.000.00-------------------------------------------------------1.00----------------
.............TTTCCCTTTTTTTTTTTTTTTTTAACCG.................................................................................................................................................................................................................281.000.00---1.00--------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTAT......................................................................................................................................................................................................................241.000.00---1.00--------------------------------------------------------------------
..............................................................................................CTACAACCTCCGCCTCCCGGATC.....................................................................................................................................231.000.00--1.00---------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTGGGG......................................................................................................................................................................................................................231.000.00--1.00---------------------------------------------------------------------
............................................................................................................................................................................................TATTTTTGGTAGAGACGGAGTCTC......................................241.000.00------1.00-----------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTCAAG...................................................................................................................................................................................................................251.000.00-----1.00------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTCTTG..................................................................................................................................................................................................................261.000.00----1.00-------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAATCG.................................................................................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTCTTC..................................................................................................................................................................................................................261.000.00---1.00--------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTCAAG.........................................................................................................................................................................................................................201.000.00-------1.00----------------------------------------------------------------
...............................................................................................................................................CAAGTAGCTGGGACTACCG........................................................................................191.000.00----------------1.00-------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTATTTG.................................................................................................................................................................................................................281.000.00----1.00-------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAATGG.................................................................................................................................................................................................................261.000.00---1.00--------------------------------------------------------------------
....................................................................................................................TCAAAGGATTCTCCTTTTG...................................................................................................................191.000.001.00-----------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTATACG.................................................................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTATG...................................................................................................................................................................................................................271.000.00-----1.00------------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAAGG..................................................................................................................................................................................................................241.000.00---1.00--------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAAGG..................................................................................................................................................................................................................251.000.00--1.00---------------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAAGCG.................................................................................................................................................................................................................251.000.00--1.00---------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTAAAG.....................................................................................................................................................................................................................251.000.00-----1.00------------------------------------------------------------------
.............................................................................................................................................................................................ATTTTTGGTAGAGACGGAGCTT.......................................221.000.00------1.00-----------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTGCTG......................................................................................................................................................................................................................231.000.00-------1.00----------------------------------------------------------------
..........................................................ACCCAGGCTGGAGTGCAATGGA..........................................................................................................................................................................221.000.00----------------1.00-------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTGTTG..................................................................................................................................................................................................................261.000.00------1.00-----------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAATCT.................................................................................................................................................................................................................251.000.00-1.00----------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTAAAG...................................................................................................................................................................................................................261.000.00----1.00-------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTATCTG.................................................................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAAACC.................................................................................................................................................................................................................261.000.00------1.00-----------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTCTAG...................................................................................................................................................................................................................251.000.00----1.00-------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTGTGT.....................................................................................................................................................................................................................241.000.00------1.00-----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTCAG...................................................................................................................................................................................................................271.000.00-----1.00------------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAAACG.................................................................................................................................................................................................................251.000.00---1.00--------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAAACG.................................................................................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------
........................................................................................................................................................................................TTTGTATTTTTGGTAGAGACGGTGA.........................................251.000.00-----------------------------------------1.00------------------------------
...........CCTTTCCCTTTTTTTTTTTTTTTTTTAAT..................................................................................................................................................................................................................291.000.00-----1.00------------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAAACC.................................................................................................................................................................................................................251.000.00-1.00----------------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAGATTC................................................................................................................................................................................................................261.000.00--1.00---------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAAACT.................................................................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCCAG..................................................................................................................................................................................................................271.000.00------1.00-----------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGCTG...................................................................................................................181.000.001.00-----------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTCAAG....................................................................................................................................................................................................................251.000.00----1.00-------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTCCAG...................................................................................................................................................................................................................271.000.00---1.00--------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTATTT..................................................................................................................................................................................................................281.000.00----1.00-------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTGCCA....................................................................................................................................................................................................................261.000.00--1.00---------------------------------------------------------------------
....................................................................................................................TCAAAGGATTCTCCTTCTG...................................................................................................................191.000.001.00-----------------------------------------------------------------------
...................................................TTCTGTCACCCAGGCTGGACCGC................................................................................................................................................................................231.000.00--1.00---------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTCCTC......................................................................................................................................................................................................................231.000.00----1.00-------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTCCAG....................................................................................................................................................................................................................251.000.00----1.00-------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTCTAG..................................................................................................................................................................................................................261.000.00-----1.00------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTAAGTG.................................................................................................................................................................................................................281.000.00---1.00--------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCCTC..................................................................................................................................................................................................................271.000.00------1.00-----------------------------------------------------------------
..............................................TCTTGTTCTGTCACCCAGGCTGGACCGA................................................................................................................................................................................281.000.00------1.00-----------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTATG...................................................................................................................................................................................................................251.000.00--1.00---------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCGAG..................................................................................................................................................................................................................271.000.00------1.00-----------------------------------------------------------------
.........................................................................................................................................................................................TTGTATTTTTGGTAGAGACGG............................................2101.001.00------------1.00-----------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTCACT......................................................................................................................................................................................................................231.000.00-------1.00----------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTTGT..................................................................................................................191.000.001.00-----------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTCAT....................................................................................................................................................................................................................241.000.00-1.00----------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCGC...................................................................................................................................................................................................................261.000.00--1.00---------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTAAG...................................................................................................................................................................................................................271.000.00---1.00--------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTATTG..................................................................................................................................................................................................................261.000.00---1.00--------------------------------------------------------------------
......................................................................................................................................................................................TTTTTGTATTTTTGGTAGAGACGG............................................2401.001.00--------------------------------------------------------------------1.00---
....................................................................GAGTGCAATGGCACAAGCGA..................................................................................................................................................................201.000.00---------------1.00--------------------------------------------------------
........................................................................................AGCTCACTACAACCTCCGCCTCCCGGGCA.....................................................................................................................................291.000.00--1.00---------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTCTG.....................................................................................................................................................................................................................241.000.00-----1.00------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTGATG..................................................................................................................................................................................................................261.000.00-------1.00----------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTCCAG...................................................................................................................................................................................................................261.000.00----1.00-------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTCCG....................................................................................................................................................................................................................261.000.00-----1.00------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTAAAA.........................................................................................................................................................................................................................211.000.00----1.00-------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTCG....................................................................................................................................................................................................................261.000.00----1.00-------------------------------------------------------------------
.............................................................................................................................................................................................ATTTTTGGTAGAGACGGAGTCCC......................................231.000.00------1.00-----------------------------------------------------------------
.............TTTCCCTTTTTTTTTTCCAA.........................................................................................................................................................................................................................201.000.00-----1.00------------------------------------------------------------------
.................CCTTTTTTTTTTTTTTTTTAGTCTG................................................................................................................................................................................................................251.000.00---1.00--------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGGT....................................................................................................................171.000.001.00-----------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAAGG..................................................................................................................................................................................................................261.000.00--1.00---------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTGGTG........................................................................................................................................................................................................................221.000.00-------1.00----------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGCCTCAG................................................................................................................2101.001.00-----------------------------------------------------------1.00------------
............CTTTCCCTTTTTTTTTTTTTTTTTAAAG..................................................................................................................................................................................................................281.000.00----1.00-------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTGATT.....................................................................................................................................................................................................................241.000.00-------1.00----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTCG..........................................................................................................................................................................................................................201.000.00----1.00-------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCTAG..................................................................................................................................................................................................................271.000.00-----1.00------------------------------------------------------------------
...........CCTTTCCCTTTTTTTTTTTTTTTTTTCTT..................................................................................................................................................................................................................291.000.00-----1.00------------------------------------------------------------------
................CCCTTTTTTTTTTTTTTTTTAAGTG.................................................................................................................................................................................................................251.000.00----1.00-------------------------------------------------------------------
...........CCTTTCCCTTTTTTTTTTTTTTTCCAG....................................................................................................................................................................................................................271.000.00-----1.00------------------------------------------------------------------
.................CCTTTTTTTTTTTTTTTTTAGAATAG...............................................................................................................................................................................................................261.000.00-1.00----------------------------------------------------------------------
................................................................................................................................................................................................TTTGGTAGAGACGGAGTTCCGCTATG................................2611.001.00---------------------------------------------------1.00--------------------
.............................................................................................................................................................TACAGGCTCCACTATGCTGGC........................................................................2111.001.00-----------------------------------------------1.00------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTCAGC..................................................................................................................................................................................................................271.000.00------1.00-----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTCTT...................................................................................................................................................................................................................271.000.00-------1.00----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTAAAAG.................................................................................................................................................................................................................291.000.00----1.00-------------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTAT...................................................................................................................181.000.001.00-----------------------------------------------------------------------
...........CCTTTCCCTTTTTTTTTCTC...........................................................................................................................................................................................................................201.000.00--1.00---------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTCTGG....................................................................................................................................................................................................................251.000.00--1.00---------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTATTAT.................................................................................................................................................................................................................281.000.00---1.00--------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTGTTG.....................................................................................................................................................................................................................241.000.00-------1.00----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTATT..........................................................................................................................................................................................................................201.000.00----1.00-------------------------------------------------------------------
.....................TTTTTTTTTTTTTTTAGAGACAGTCC...........................................................................................................................................................................................................261.000.00------1.00-----------------------------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGTGGG..................................................................................................................191.000.00-----------------------------1.00------------------------------------------
.....................................................................................................................CAAAGGATTCTCCTGCGCTT.................................................................................................................201.000.00----------------------------1.00-------------------------------------------
............CTTTCCCTTTTTTTTTTTAAAG........................................................................................................................................................................................................................221.000.00-1.00----------------------------------------------------------------------
............................................................................................................................................................................................TATTTTTGGTAGAGACGGAATA........................................221.000.00------------------------------------------1.00-----------------------------
..............TTCCCTTTTTTTTTTTTTTTTTCCCC..................................................................................................................................................................................................................261.000.00--1.00---------------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTATG....................................................................................................................................................................................................................261.000.00-------1.00----------------------------------------------------------------
............CTTTCCCTTTTTTTTTTTTTTTTTAAA...................................................................................................................................................................................................................271.000.00-1.00----------------------------------------------------------------------
........................................................................................................................AGGATTCTCCTGCCTCAGCCCCTC..........................................................................................................241.000.00--1.00---------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTCAG....................................................................................................................................................................................................................241.000.00--1.00---------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAG....................................................................................................................................................................................................................2440.750.75-0.50---0.25------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAG....................................................................................................................................................................................................................2370.570.57-0.290.140.14--------------------------------------------------------------------
.............TTTCCCTTTTTTTTTTTTTTTTTAG....................................................................................................................................................................................................................2520.500.50-----0.50------------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAGA...................................................................................................................................................................................................................2440.250.25--0.25---------------------------------------------------------------------
..............TTCCCTTTTTTTTTTTTTTTTTAGC...................................................................................................................................................................................................................2540.250.75------0.25-----------------------------------------------------------------
...............TCCCTTTTTTTTTTTTTTTTTAGG...................................................................................................................................................................................................................2470.140.57---0.14--------------------------------------------------------------------

Antisense strand
TTTGAAATCTGCCTTTCCCTTTTTTTTTTTTTTTTTAGAGACAGAGTCTTGTTCTGTCACCCAGGCTGGAGTGCAATGGCACAATCTCAGCTCACTACAACCTCCGCCTCCCGGGTTCAAAGGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCTCCACTATGCTGGCTAATTTTTTGTATTTTTGGTAGAGACGGAGTTCCGCTATGTTGCACAGACTTGTCTTGAACTCCTGAGCTCA
.....................................................(((..((((((((.((((((...((((.........)).))...))..))))))))...))))....(((.....)))....)))................................................................................................................
..................................................51......................................................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR390723(GSM850202)
total small RNA. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189786TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359175(GSM359175)
hela_5_pct. (hela)
SRR343336SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PAZD5SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
..................................................GTTCTGTCACCCAGGCTGGAGTCTG............................................................................................................................................................................... 2515.000.00--------2.001.002.00--2.00---2.00--1.00--1.00----------------------1.00-1.00----1.00---------1.00--------
........................................................................................AGCTCACTACAACCTCCTG............................................................................................................................................... 1910.000.00--------2.00--2.00-------2.00-1.00-------------1.00---1.00-------------------------1.00------
..................................................GTTCTGTCACCCAGGCTGGAGTTCTG.............................................................................................................................................................................. 268.000.00--------2.00--------1.002.001.00----------1.00--1.00--------------------------------------
........................................................................................AGCTCACTACAACCTCCGCTG............................................................................................................................................. 217.000.00--------1.00--1.00-1.00----------------------1.00------1.00-1.00----1.00---------------------
........................................................................................AGCTCACTACAACCTCCCTG.............................................................................................................................................. 204.000.00----------1.001.00------------------1.001.00----------------------------------------
..................................................GTTCTGTCACCCAGGCTGGAGTGTCTG............................................................................................................................................................................. 273.000.00--------------------1.00----1.00--------------------------------1.00-------------
........................................ACAGAGTCTTGTTCTGTCACCCAGTTTT...................................................................................................................................................................................... 282.000.00----------------------2.00-------------------------------------------------
.................................................................................................................................CTGCCTCAGCCTCCCAAGTAGCTGGGACTCCGG........................................................................................ 332.000.00--2.00---------------------------------------------------------------------
........................................................................................AGCTCACTACAACCTCCGCCTCCCGCTG...................................................................................................................................... 282.000.00------------------1.00--------------------------------------------------1.00--
..............................................................................................CTACAACCTCCGCCTCCCGGAA...................................................................................................................................... 221.000.00---------------------------------------------------------1.00--------------
.........................................................................................GCTCACTACAACCTCCGCCTCG........................................................................................................................................... 221.000.00--------------1.00---------------------------------------------------------
..................................................................................AATCTCAGCTCACTACAAAA.................................................................................................................................................... 201.000.00--------------------------------1.00---------------------------------------
.......................................GACAGAGTCTTGTTCCTT................................................................................................................................................................................................. 181.000.00------------------------------------------------------------------1.00-----
..................................................GTTCTGTCACCCAGGCTGGAGTCAG............................................................................................................................................................................... 251.000.00---------1.00--------------------------------------------------------------
.......................................................................................CAGCTCACTACAACCTCCGCCTCCCGGGTGG.................................................................................................................................... 311.000.00--1.00---------------------------------------------------------------------
.......................................................................................CAGCTCACTACAACCTCCGCCTCCCGGGTG..................................................................................................................................... 301.000.00-----------------------------------------------------------------------1.00
.........................................................................................GCTCACTACAACCTCCGCCTCCCGGGGGG.................................................................................................................................... 291.000.00--------------------------------------------1.00---------------------------
............................................................................................................................................................................................TATTTTTGGTAGAGACGGAG.......................................... 201.000.00----------------------------------------------------1.00-------------------
.........................................CAGAGTCTTGTTCTGTCACCCACCAC....................................................................................................................................................................................... 261.000.00--1.00---------------------------------------------------------------------
.....................................................................................................................CTGAGGCAGGAGAATCCTTTG................................................................................................................ 2101.001.00----------------1.00-------------------------------------------------------
........................................................................................AGCTCACTACAACCTCCGCCCTG........................................................................................................................................... 231.000.00--------1.00---------------------------------------------------------------
..................................................................................................................GTTCAAAGGATTCTCCTGCCTCATTTG............................................................................................................. 271.000.00---------1.00--------------------------------------------------------------
..............................................................................................CCCGGGAGGCGGAGGTTGTAG....................................................................................................................................... 2101.001.00--------------1.00---------------------------------------------------------
........................................................................CTGAGATTGTGCCATTGC................................................................................................................................................................ 1801.001.00------------1.00-----------------------------------------------------------
......................................................................................GAGGCGGAGGTTGTAGTGAGCTGA............................................................................................................................................ 2401.001.00---------------------------1.00--------------------------------------------
..........................................................................................................................................................................................TGTATTTTTGGTAGAGACGGGG.......................................... 221.000.00----------------------------1.00-------------------------------------------
.................................................................................................................................................AGTAGCTGGGACTACAGGCTGGCA................................................................................. 241.000.00------------------------------------------------------------1.00-----------
...........................................................................................TCACTACAACCTCCGCCTCCCACAA...................................................................................................................................... 251.000.00-----------------------------1.00------------------------------------------
...............................................................GGCTGGAGTGCAATGGCACAATCTCAGCTGGGC.......................................................................................................................................................... 331.000.00--1.00---------------------------------------------------------------------
............................................................................................CACTACAACCTCCGCCTCCCGGGTGGTT.................................................................................................................................. 281.000.00-------------------------------------------------1.00----------------------
..................................................................................................................................................................................TAATTTTTTGTATTTTTGGTAGAGACG............................................. 271.000.00---------------1.00--------------------------------------------------------
...........................................................................................TCACTACAACCTCCGCCTCCTT......................................................................................................................................... 221.000.00--------------------------------------------------------------1.00---------
.......................................................GTCACCCAGGCTGGAGTGCAAC............................................................................................................................................................................. 221.000.00------------------------1.00-----------------------------------------------
....................................................................................................CCTCCGCCTCCCGGGTTATGC................................................................................................................................. 211.000.00---------------------------1.00--------------------------------------------
...............................................................GGCTGGAGTGCAATGGCACAATAGAC................................................................................................................................................................. 261.000.00--1.00---------------------------------------------------------------------
........................................................................................AGCTCACTACAACCTCCGCCTCCCGGGCTG.................................................................................................................................... 301.000.00--------------------1.00---------------------------------------------------
..............................................................................................ACCCGGGAGGCGGAGGTTGTAG...................................................................................................................................... 2201.001.00------------1.00-----------------------------------------------------------
...............................................................GGCTGGAGTGCAATGGCACAATGGC.................................................................................................................................................................. 251.000.00--1.00---------------------------------------------------------------------
....................................................................................................CCTCCGCCTCCCGGGTTCAATCC............................................................................................................................... 231.000.00------1.00-----------------------------------------------------------------
.........................................................................................GCTCACTACAACCTCCGCCGGG........................................................................................................................................... 221.000.00----------------------------------------------------------------------1.00-
...............................................................GGCTGGAGTGCAATGGCACAGAG.................................................................................................................................................................... 231.000.00--1.00---------------------------------------------------------------------
......................................................................GTGCAATGGCACAATCTCAGCTCACG.......................................................................................................................................................... 261.000.00--1.00---------------------------------------------------------------------
.........................................................................................GAGGCGGAGGTTGTAGTGAGC............................................................................................................................................ 2101.001.00------------------------1.00-----------------------------------------------
.........................................................................CAATGGCACAATCTCAGCTCAAAG......................................................................................................................................................... 241.000.00----------------------------------------1.00-------------------------------
.......................................................................................CAGCTCACTACAACCTCCGCCTGG........................................................................................................................................... 241.000.00----------------------------------1.00-------------------------------------
..................................................GTTCTGTCACCCAGGCTGGAGTGCTCTG............................................................................................................................................................................ 281.000.00-------------------------1.00----------------------------------------------
...............................................................GGCTGGAGTGCAATGGCACAATGGAC................................................................................................................................................................. 261.000.00--1.00---------------------------------------------------------------------
.........................................................................CAATGGCACAATCTCAGCAAAA........................................................................................................................................................... 221.000.00----------------------------------------------------------------1.00-------
........................................................................................................................................................................................TTTGTATTTTTGGTAGAGACGGATAAG....................................... 271.000.00-----1.00------------------------------------------------------------------
.......................................................................................................CCGCCTCCCGGGTTCATG................................................................................................................................. 181.000.00--------------1.00---------------------------------------------------------
.........................................................................................................................................................................................TTGTATTTTTGGTAGAGACTAG........................................... 221.000.00---------------1.00--------------------------------------------------------
.............................................................CAGGCTGGAGTGCAATGGCACAATCGAC................................................................................................................................................................. 281.000.00------1.00-----------------------------------------------------------------
...............................................................GGCTGGAGTGCAATGGCACAATGGTC................................................................................................................................................................. 261.000.00--1.00---------------------------------------------------------------------
..........................................................................................................TTTGAACCCGGGAGG................................................................................................................................. 1501.001.00--------------------------------------------------------1.00---------------
.....................................................................................CTCAGCTCACTACAACCTCCGCCTCCCGTCG...................................................................................................................................... 311.000.00-----------------------1.00------------------------------------------------
....................................................................................................................................................AGCTGGGACTACAGGCTTTGG................................................................................. 211.000.00--1.00---------------------------------------------------------------------
..................ACTCTGTCTCTAAAAAAAAAAAAAAAAAG........................................................................................................................................................................................................... 2990.110.11-0.11----------------------------------------------------------------------
...................................CCTGGGTGACAGAACAAGACTCTGTCTCTA......................................................................................................................................................................................... 3090.110.11-----0.11------------------------------------------------------------------