ID: uc004cli.1_intron_7_0_chr9_140052976_f
GENE: GRIN1(8)
chr9:140052926-140053122+


(1)
AGO2.ip 		(13)
BRAIN 		(1)
BREAST 		(3)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(2)
OTHER 		(5)
SKIN

Sense strand
ACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAATGGCACCCACGTAGGTGGGGGTCATGAGGGGGTGGGGGCTGGGGCCTTAGGGTCCTGGGGCCAAGACCCCTGCGTGGCCACCCTCCATCTCATACTCCCACCCCCAGGTCATCCCTAATGACAGGAAGATCATCTGGCCAGGCGGAGAGACAGAGAA
.....................................................(((((((((.(((((..((.(((((((.(((((....))))).((((......)))).....)))).))).))..)))))))))))))).......................................................
..................................................51..............................................................................................147................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532876(GSM532876)
G547T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
........................................................................................................................CCCTCCATCTCATACTCCCACCCCC....................................................25117.0017.0017.00----------------------------
............................................................................................................................CCATCTCATACTCCCACCCCCAGT.................................................24113.002.00--3.001.00-2.00-1.001.00-1.00--1.002.00---1.00----------
........................................................................................................................CCCTCCATCTCATACTCCCACCCCCA...................................................26112.0012.0012.00----------------------------
........................................................................................................................CCCTCCATCTCATACTCCCACCCC.....................................................2417.007.005.002.00---------------------------
.........................................................................................................................CCTCCATCTCATACTCCCACCCCCA...................................................2516.006.00-4.001.00-----1.00--------------------
.........................................................................................................................CCTCCATCTCATACTCCCACCCCC....................................................2416.006.00-3.00-1.002.00------------------------
.........................................................................................................................CCTCCATCTCATACTCCCACCCC.....................................................2314.004.00--2.00--1.00--1.00--------------------
................................................................................................................................CTCATACTCCCACCCCCAGT.................................................204.000.00-1.00--1.00--------1.00--------1.00------
.........................................................................................................................CCTCCATCTCATACTCCCACCC......................................................2214.004.00-2.00-1.001.00------------------------
.........................................................................................................................CCTCCATCTCATACTCCCACC.......................................................2113.003.00--2.00----1.00---------------------
........................................................................................................................CCCTCCATCTCATACTCCCACCC......................................................2313.003.002.00-----1.00----------------------
............................................................................................................................CCATCTCATACTCCCACCCCCAG..................................................2312.002.00-1.001.00--------------------------
.................................................................................................................................TCATACTCCCACCCCTG...................................................172.000.00---------2.00-------------------
....................................................AGGTGGGGGTCATGAGGGC..............................................................................................................................192.000.00------------2.00----------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGGGGGC......................................................................................................................3012.002.002.00----------------------------
...........................................................................................................................TCCATCTCATACTCCCACCCCCAA..................................................242.000.00------2.00----------------------
...................................................................................................GCCAAGACCCCTGCGTGGCC..............................................................................2011.001.00-1.00---------------------------
.....................................................................................................................................................................AAGATCATCTGGCCAGGCGGAGA.........2311.001.00-1.00---------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGGGGGCTGGGGCC...............................................................................................................3711.001.001.00----------------------------
...................................................TAGGTGGGGGTCATGAGGAG..............................................................................................................................201.000.00---1.00-------------------------
..................................................GTAGGTGGGGGTCATGAGGGGG.............................................................................................................................2211.001.00-1.00---------------------------
........................................................................................................................CCCTCCATCTCATACTCCCACCCCCAG..................................................2711.001.001.00----------------------------
.....................................................................GGGTGGGGGCTGGGGCGCGG............................................................................................................201.000.00----------------1.00------------
.....................................................................................................................CCACCCTCCATCTCATACTCCC..........................................................2211.001.00-1.00---------------------------
....................................................................................................................................................................GAAGATCATCTGGCCAGGCGGAGAGACAGA...3011.001.00-1.00---------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTG...........................................................................................................................2511.001.001.00----------------------------
.............................................................................................................................................................ATGACAGGAAGATCATCTGGCCAGGC..............2611.001.00-1.00---------------------------
..................................................................................................................................................................AGGAAGATCATCTGGCCAGGCGGAGAGACA.....3011.001.00-1.00---------------------------
.................................................................................................................................................................CAGGAAGATCATCTGGCCAGGCGG............2411.001.00-1.00---------------------------
............................................................................................................................................................................TCTGGCCAGGCGGAGAGAC......1911.001.00-1.00---------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGGGGGCT.....................................................................................................................3111.001.001.00----------------------------
........................................................................................................................CCCTCCATCTCATACTCCCACCCCCG...................................................2611.0017.001.00----------------------------
.CCTGCAGAACCGCAAGCTGGTGCAAGTGGGC.....................................................................................................................................................................3111.001.00-1.00---------------------------
...........................................................................................................................TCCATCTCATACTCCCACCCCA....................................................221.000.00-----------1.00-----------------
...................................................TAGGTGGGGGTCATGAGTT...............................................................................................................................191.000.00-----1.00-----------------------
.....................................................................................................................................................................AAGATCATCTGGCCAGGCGGAGAG........2411.001.00-1.00---------------------------
............................................................................................................................CCATCTCATACTCCCACCCCCA...................................................2211.001.00---1.00-------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGGGGGCTGGG..................................................................................................................3411.001.001.00----------------------------
.................................................................................................................................TCATACTCCCACCCCCAGT.................................................191.000.00--1.00--------------------------
..............................................................................................................................................................TGACAGGAAGATCATCTG.....................1811.001.00---1.00-------------------------
.......................................................................................................................ACCCTCCATCTCATACTC............................................................1811.001.001.00----------------------------
.................................................CGTAGGTGGGGGTCAT....................................................................................................................................1611.001.001.00----------------------------
........................................................................................................................CCCTCCATCTCATACTCCCACCCCCT...................................................2611.0017.001.00----------------------------
........................................................................................................................CCCTCCATCTCATACTCCCACCCCA....................................................2511.007.001.00----------------------------
........................AAGTGGGCATCTACAATGTCA........................................................................................................................................................211.000.00-1.00---------------------------
................................................................................GGGGCCTTAGGGTCCTTCT..................................................................................................191.000.00-----------------1.00-----------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGGGGGCTGGGGCCT..............................................................................................................3811.001.001.00----------------------------
.............................................................................................................................................................................CTGGCCAGGCGGAGAGACA.....1911.001.00-1.00---------------------------
..................................................GTAGGTGGGGGTCATGAGGGGGTGGGGGCTG....................................................................................................................3111.001.00-1.00---------------------------
............................................................................................................................CCATCTCATACTCCCATGT......................................................191.000.00---------------------------1.00-
..............................................................................................................................................................TGACAGGAAGATCATCTGGC...................2011.001.00--------1.00--------------------
...................................................................................................................................................................GGAAGATCATCTGGCCAGGCGGAGAGACA.....2911.001.00-1.00---------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGT............................................................................................................................2411.001.001.00----------------------------
.........................................................................................................................CCTCCATCTCATACTCCCAC........................................................2011.001.00------1.00----------------------
......AGAACCGCAAGCTGGACA.............................................................................................................................................................................181.000.00-------------------------1.00---
..............................................................................................................................ATCTCATACTCCCACCCCCAGT.................................................221.000.00-----1.00-----------------------
.............................................................................................................................CATCTCATACTCCCACCCCCAT..................................................221.000.00-1.00---------------------------
.................................................................................................................................................................CAGGAAGATCATCTGGCCAGGCGGA...........2511.001.00----------1.00------------------
........................................................................................................................................................CCCTAATGACAGGAAGATCATCTGGCCAGGC..............3111.001.001.00----------------------------
..................................................................................................................................................................AGGAAGATCATCTGGCCAGG...............2011.001.00----1.00------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGGGGGCTG....................................................................................................................3211.001.001.00----------------------------
.................................................CGTAGGTGGGGGTCATGAGGGGGTGG..........................................................................................................................2611.001.001.00----------------------------
.........................................................................................................................CCTCCATCTCATACTCCCACCCCCAGT.................................................271.000.00-----------------------1.00-----
...........................................................................................................................................................................ATCTGGCCAGGCGGAGAGAC......2011.001.00--1.00--------------------------
....GCAGAACCGCAAGCTGGTGCAAGTG........................................................................................................................................................................2511.001.00-----------1.00-----------------
.........................................................................................................................CCTCCATCTCATACTCCCACCCCCT...................................................2511.006.00--1.00--------------------------
...............................................................................................................................................................................GGCCAGGCGGAGAGA.......1530.330.33----------------------------0.33
.....................................................................................................................................................CATCCCTAATGACAG.................................1560.170.17---------------0.17-------------

Antisense strand
ACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAATGGCACCCACGTAGGTGGGGGTCATGAGGGGGTGGGGGCTGGGGCCTTAGGGTCCTGGGGCCAAGACCCCTGCGTGGCCACCCTCCATCTCATACTCCCACCCCCAGGTCATCCCTAATGACAGGAAGATCATCTGGCCAGGCGGAGAGACAGAGAA
.....................................................(((((((((.(((((..((.(((((((.(((((....))))).((((......)))).....)))).))).))..)))))))))))))).......................................................
..................................................51..............................................................................................147................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532876(GSM532876)
G547T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
.......................CATTGTAGATGCCCACTTG........................................................................................................................................................... 1911.001.00--------------------1.00--------
........................................................................................................GACCCCTGCGTGGCCGGC........................................................................... 181.000.00-------------------1.00---------
.................................................................................................................................................................CAGGAAGATCATCTGGG................... 171.000.00--------------------------1.00--
..............................................................................................................................................................TGACAGGAAGATCATCTTC.................... 191.000.00---------------------1.00-------
......................................................................................TTAGGGTCCTGGGGCTGGA............................................................................................ 191.000.00------------------------1.00----
......................................AATGGCACCCACGTAATTG............................................................................................................................................ 191.000.00---------------1.00-------------