ID: uc004clh.2_intron_8_0_chr9_140007949_r
GENE: (4)
chr9:140007899-140008366-


(1)
AGO2.ip
(3)
B-CELL
(4)
BRAIN
(3)
BREAST
(18)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(10)
SKIN
(1)
XRN.ip

Sense strand
CGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAGGTGGGCGCCTCCCCCGGCCTCCGCACCCCCTCCCTCCCCTGCCCCGACCCAGCGCCCCCAGCCCTTCTCCCCACTCCCCTCTGACTCCCACCGCTGCCTTTTCGTAAGGCCTCAGGCAGTGGTTCCAGGCTTAGTGTTGCCTCCCCCAGGAAGCCCTCCCACCTGTCCTCCCAGCCACCTGCTCAGCTTGGATGTGCGGCCACACTAGCGGCCTTTCCCAGTGAGAGCTGCACCCGCACCTGGCCCAGGGTTGGAATTTGTGGGTCTCAGAAGTGTCGTCCTCCTTGTGGCACCTGTGGGCCCCTGAGGAGGAAAAGAGGAAATGGGGTGTTGGGGGCAGCAGCCCTAACCCTGTGTCCCTCACCCAGTTATGGGGGGATGCTCAGTGCCTACCTGAGGATGAAGTATCCCCACCTGG
....................................................((((((......(((.....(((..............))).))).....)))))).((((.........((........)).........))))..................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150............................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
.....................................................................................................................................ACTCCCACCGCTGCCACCA............................................................................................................................................................................................................................................................................................................................1930.000.007.009.003.00--2.00-1.00---1.001.00---1.00-1.00----1.001.00-1.00---------------1.00-----------
....................................................................................................................................GACTCCCACCGCTGCCACCA............................................................................................................................................................................................................................................................................................................................205.000.002.00---------------------1.00-------1.001.00----------------------
................................................................................................................................................................................................................................................................................................................................................GTGGCACCTGTGGGCCCCTGAGGAGGA.........................................................................................................2714.004.00----2.00--------2.00----------------------------------------
.....................................................................................................................................ACTCCCACCGCTGCCTCCA............................................................................................................................................................................................................................................................................................................................192.000.00---------------------------1.00-------------1.00------------
................................................................................................................................................................................................................................................................................................................................................GTGGCACCTGTGGGCCCCTGAGGAGGAAAAGAGGAAATGGGGTGTTGGGGGCAGCAGCCCTAACCCTGTGTC............................................................7212.002.00--------------2.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................AGAGGAAATGGGGTGTTGGGG..................................................................................2112.002.00---------2.00--------------------------------------------
.....................................................................................................................................................................................................................................................................................................................GTGGGTCTCAGAAGTGTCGT...........................................................................................................................................2011.001.00----------------------------------1.00-------------------
...CGCGACCTCGGGGCCTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------------1.00--------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGGATGCTCAGTGCC............................1911.001.00---1.00--------------------------------------------------
.............................................................................................................................................................................................................................................................................................................TGGAATTTGTGGGTCTCAGAA..................................................................................................................................................2111.001.00--------1.00---------------------------------------------
...............................................................................................................................................................................................................................................................................................................GAATTTGTGGGTCTCAGAAGTGTCGTCCT........................................................................................................................................2911.001.00-----------------------------------------------1.00------
.................................................................................................................................................................................................................................................................................................................ATTTGTGGGTCTCAGAAGTG...............................................................................................................................................2011.001.00--------------------------------------1.00---------------
...............................................................................................GACCCAGCGCCCCCACGCA..................................................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------1.00-----
...........................................................................................................................................................................................................................................GCTTGGATGTGCGGCCACA......................................................................................................................................................................................................................1911.001.00-----------------------------1.00------------------------
...CGCGACCTCGGGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001.00---------------1.00--------------------------------------
.....................................................................................................................................ACTCCCACCGCTGCCACC.............................................................................................................................................................................................................................................................................................................................181.000.00-1.00----------------------------------------------------
...................................CGCCTTCGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001.00-----------1.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................GTTGGAATTTGTGGGTCTCAGAAGTG...............................................................................................................................................2611.001.00--------------------------------------------1.00---------
.................................................................................................................CTTCTCCCCACTCCCCTCTCCT.............................................................................................................................................................................................................................................................................................................................................221.000.00------1.00-----------------------------------------------
.....................................................................................................................................ACTCCCACCGCTGCCAAAG............................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00------------------
...........................................................................................................................................................................................TGCCTCCCCCAGGAACCG.......................................................................................................................................................................................................................................................................181.000.00-------------------------------------1.00----------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTGAGGATGAAGTATCC........2111.001.00---1.00--------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................TGGGGGCAGCAGCCCTAGTGC..................................................................211.000.00----------1.00-------------------------------------------
...................................................................................................................................................................................................................................................................GGCCTTTCCCAGTGAGAG...............................................................................................................................................................................................1811.001.00-------------------1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................GTGGGTCTCAGAAGTGTCGTCCTCCTTGTGGC...............................................................................................................................3211.001.00--------1.00---------------------------------------------
..ACGCGACCTCGGGGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------1.00---------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGATGAAGTATCCC.......1811.001.00------------1.00-----------------------------------------
................................................................................TCCCTCCCCTGCCCCGA...................................................................................................................................................................................................................................................................................................................................................................................1720.500.50----------------------------------------------------0.50-
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGGGATGCTCAG................................1620.500.50---------------------------------------------------0.50--

Antisense strand
CGACGCGACCTCGGGGCCCAGGATGCCCCCGCCATCGCCTTCGGTGGAAGGTGGGCGCCTCCCCCGGCCTCCGCACCCCCTCCCTCCCCTGCCCCGACCCAGCGCCCCCAGCCCTTCTCCCCACTCCCCTCTGACTCCCACCGCTGCCTTTTCGTAAGGCCTCAGGCAGTGGTTCCAGGCTTAGTGTTGCCTCCCCCAGGAAGCCCTCCCACCTGTCCTCCCAGCCACCTGCTCAGCTTGGATGTGCGGCCACACTAGCGGCCTTTCCCAGTGAGAGCTGCACCCGCACCTGGCCCAGGGTTGGAATTTGTGGGTCTCAGAAGTGTCGTCCTCCTTGTGGCACCTGTGGGCCCCTGAGGAGGAAAAGAGGAAATGGGGTGTTGGGGGCAGCAGCCCTAACCCTGTGTCCCTCACCCAGTTATGGGGGGATGCTCAGTGCCTACCTGAGGATGAAGTATCCCCACCTGG
....................................................((((((......(((.....(((..............))).))).....)))))).((((.........((........)).........))))..................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150............................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR037936(GSM510474)
293cand1. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335TAX577579(Rovira)
total RNA. (breast)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038863(GSM458546)
MM603. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR029131(GSM416760)
MCF7. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
........................................................................................................................................................................................................AAGCCCTCCCACCTGTAG.......................................................................................................................................................................................................................................................... 181.000.00-------------------------------------------------1.00----
.................................................................................................................................................................................................................................................................................................................................................TGGCACCTGTGGGCCACA................................................................................................................. 181.000.001.00-----------------------------------------------------
......................................................................................................................................................................................................................GTCCTCCCAGCCACCTGCGGG......................................................................................................................................................................................................................................... 211.000.00----------1.00-------------------------------------------
.........................................................................................................CCCCAGCCCTTCTCCCCCGG....................................................................................................................................................................................................................................................................................................................................................... 201.000.00-----------------1.00------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGTTAGGGCTGCTGC............................................................... 1911.001.00----------------------------------------------1.00-------
......................................................................................................................................................................................................................GTCCTCCCAGCCACCTCTG........................................................................................................................................................................................................................................... 191.000.00-------------------------------------------1.00----------
...................................................................................................................................................................................................CCAGGAAGCCCTCCCCCAC.............................................................................................................................................................................................................................................................. 191.000.00----------------------------------------1.00-------------
.............................................................................................CCGACCCAGCGCCCCCACGGC.................................................................................................................................................................................................................................................................................................................................................................. 211.000.00------------------------------------1.00-----------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCCTCAGGTAGGCACTGAGCATCCCCCC.............. 3211.001.00-------1.00----------------------------------------------
.........................................................................................................................................................................................................................................................................TCCCAGTGAGAGCTGCAGGGA...................................................................................................................................................................................... 211.000.00------1.00-----------------------------------------------
........................................................................................................................................................................................................AAGCCCTCCCACCTGTATG......................................................................................................................................................................................................................................................... 191.000.00--------------------1.00---------------------------------
..........................................................................ACCCCCTCCCTCCCCACTG....................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------1.00-------------------------
........................................................................GCACCCCCTCCCTCCTATG......................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------1.00--------------------------------
...........................................................GGTGCGGAGGCCGGGGGA....................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00---------------------------------1.00--------------------
.........................................................CCTCCCCCGGCCTCCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-------------------------1.00----------------------------
..........................................................................................GCCCCGACCCAGCGCCGGC....................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------------------------1.00--------
............................................................................................................................................................................................AGGGCTTCCTGGGGGAGGC..................................................................................................................................................................................................................................................................... 1950.600.60--------------------------------------------------0.60---
...........................................................................................GGCGCTGGGTCGGGG.......................................................................................................................................................................................................................................................................................................................................................................... 1540.250.25-----------------------------------------------------0.25