ID: uc004ckw.1_intron_2_0_chr9_139944442_r
GENE: (6)
chr9:139944392-139944785-


(3)
BREAST
(3)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(2)
HELA
(3)
LIVER
(2)
OTHER
(24)
SKIN
(1)
UTERUS

Sense strand
GATGCTCTTTCAATGGGGTCTTCCAGCCCCCAGTGGCTGGGAACTTTGTGGTGAGTAGGGGCAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAGGGACAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAGGGACAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAGGGACAGGCGGGTGGCTGGGAACTTTGTCGTGAGTAGGGATAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAAGGGCAGGCGGGTGGCTGGGAACTTTGTCGTGAGTAGGGACAGGCGGGTGGCAGCAGGTGCTCTGAGCCGCTGGGGTTCGGTCACAGTGTGACTGCGCCCCCTACAGGCCTTCTCTGCCTTCTTCTACACTGTGGACTTTTTGCGGACTTCGATGGG
...................................................(((.(((((.(((.((..((.(((...((((......)))).....))).))..)).)))....))))))))...............................................................................................................................................................................................................................................................................
..................................................51.......................................................................124............................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................CGGGTGGCTGGGAACTCTG..................................................................................................................................................................................................................................................................................19618.005.00-6.006.006.00----------------------------------------
.............................................................................................................................................................................CGGGTGGCTGGGAACTTTG..........................................................................................................................................................................................................19611.0011.00-2.002.001.00---1.00--1.00---------------------1.00--1.00-1.001.00-----
...................................................................................................GGCGGGTGGCTGGGAACTCTG..................................................................................................................................................................................................................................................................................216.000.00----6.00---------------------------------------
.....................................................................................................................................................................................................................................................CGGGTGGCTGGGAACT.....................................................................................................................................1665.005.00-2.00-----1.00-------------------------1.001.00---------
................................................................................................................................................................................................................................................................................AGGGACAGGCGGGTGTTT........................................................................................................184.000.00-----4.00--------------------------------------
....................................................................................................................................ACAGGCGGGTGGCTGGGAACTTTG..............................................................................................................................................................................................................................................2432.002.00------2.00-------------------------------------
.................................................................................................................................................................................................................................TTGTCGTGGGTAAGGGCAGGC....................................................................................................................................................2112.002.002.00-------------------------------------------
.............................................................................................................................................................................................TTGTCGTGAGTAGGGGCA...........................................................................................................................................................................................182.000.002.00-------------------------------------------
................................................................................................................................................................................................................................................................GAACTTTGTCGTGAGTAGGGGCA...................................................................................................................232.000.002.00-------------------------------------------
.......................................................................................................................................................................................................................................................GGTGGCTGGGAACTTTG..................................................................................................................................1771.711.71-0.86-------------------------------------0.86----
..................................................................................................................................................................................................................................TGTCGTGGGTAAGGGCAGGC....................................................................................................................................................2011.001.001.00-------------------------------------------
...................................................TGAGTAGGGGCAGGCGGGTGGCGGC..............................................................................................................................................................................................................................................................................................................................251.000.00-----------------1.00--------------------------
.................................................................................................................................................................................................................................................................AACTTTGTCGTGAGTAGGGACAGGCGGGTGGCT........................................................................................................331.000.001.00-------------------------------------------
..........................................................................................................................................................................................................GGATAGGCGGGTGGCTTT..............................................................................................................................................................................181.000.00----------------------1.00---------------------
........................................................................................................................................................................................................................................................................TCGTGAGTAGGGACAGGC................................................................................................................1811.001.00-------------1.00------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................GACTTTTTGCGGACTTCGATGG.2211.001.00---------------------------1.00----------------
................................................................................................................................................................................................................GCGGGTGGCTGGGAACTTTGTCGTGGGTAA............................................................................................................................................................3011.001.001.00-------------------------------------------
...........................................................................................................................................................................................................GATAGGCGGGTGGCTGGGAACTTTG......................................................................................................................................................................2511.001.00---------------1.00----------------------------
................GGTCTTCCAGCCCCCCCCT.......................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------1.00-----------------------
...........................................................................................................................................GGTGGCTGGGAACTTTGTCGTGGGTAGG...................................................................................................................................................................................................................................2831.001.001.00-------------------------------------------
...............................................................................................................................................................................................................................................................................................GCAGCAGGTGCTCTGTTTT........................................................................................191.000.00----------------1.00---------------------------
.........................................................................................................................................................................................................................................GGTAAGGGCAGGCGGCAA...............................................................................................................................................181.000.00--------1.00-----------------------------------
.....................................................................................................................................................................................................................................................................TTGTCGTGAGTAGGGACAGGCG...............................................................................................................2211.001.001.00-------------------------------------------
.............................................................................................................................................................................................................TAGGCGGGTGGCTGGTC............................................................................................................................................................................171.000.00--------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................TGTGGACTTTTTGCGGACTTCGATGG.2611.001.001.00-------------------------------------------
.................................................................................................................................................................................................................................................................................................................................CAGTGTGACTGCGCCCCCTACAG..................................................2311.001.00------------------------1.00-------------------
............................................................................................................................................................................................................................................AAGGGCAGGCGGGTGTCGT...........................................................................................................................................191.000.00------------------1.00-------------------------
.............................................................CAGGCGGGTGGCTGGGAAC..........................................................................................................................................................................................................................................................................................................................1951.001.00-------------------------1.00------------------
.............................................................................................................TGGGAACTTTGTCGTGGGT..........................................................................................................................................................................................................................................................................1941.001.00---------1.00----------------------------------
...............................................................................................................................................................................GGTGGCTGGGAACTTTGTCGTGAGTA.................................................................................................................................................................................................2621.001.001.00-------------------------------------------
.............................................TTGTGGTGAGTAGGGGCAGGC........................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------1.00------------------------
................GGTCTTCCAGCCCCCCGTT.......................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00--------------------
......................................................................................................................................AGGCGGGTGGCTGGGAACTTTG..............................................................................................................................................................................................................................................2261.001.00----------1.00---------------------------------
...................................................................GGTGGCTGGGAACTTTGTCG...................................................................................................................................................................................................................................................................................................................2061.001.001.00-------------------------------------------
..................................................................GGGTGGCTGGGAACTTTG......................................................................................................................................................................................................................................................................................................................1861.001.00-1.00------------------------------------------
..................................................................................................................................................................................................................GGGTGGCTGGGAACTTT.......................................................................................................................................................................1761.001.001.00-------------------------------------------
................................................................................................................................................................................GTGGCTGGGAACTTTG..........................................................................................................................................................................................................1680.880.88--0.88-----------------------------------------
............................................................................................................................................................................GCGGGTGGCTGGGAAC..............................................................................................................................................................................................................1670.860.860.86-------------------------------------------

Antisense strand
GATGCTCTTTCAATGGGGTCTTCCAGCCCCCAGTGGCTGGGAACTTTGTGGTGAGTAGGGGCAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAGGGACAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAGGGACAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAGGGACAGGCGGGTGGCTGGGAACTTTGTCGTGAGTAGGGATAGGCGGGTGGCTGGGAACTTTGTCGTGGGTAAGGGCAGGCGGGTGGCTGGGAACTTTGTCGTGAGTAGGGACAGGCGGGTGGCAGCAGGTGCTCTGAGCCGCTGGGGTTCGGTCACAGTGTGACTGCGCCCCCTACAGGCCTTCTCTGCCTTCTTCTACACTGTGGACTTTTTGCGGACTTCGATGGG
...................................................(((.(((((.(((.((..((.(((...((((......)))).....))).))..)).)))....))))))))...............................................................................................................................................................................................................................................................................
..................................................51.......................................................................124............................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................CACGACAAAGTTCCCAGC......................................................................................................................................................................................................................................... 1862.002.00---------1.00--------------------------1.00-------
.............................................................................................................................................................................................................................................................................................................................AAGTCCACAGTGTAGAAGAAGGCAGAGAAGGCCTGTAGGGGGCGCAGTCACACTGTGAC.................. 5911.001.00-------------------------------1.00------------
.................GTCTTCCAGCCCCCAGA........................................................................................................................................................................................................................................................................................................................................................................ 171.000.00-----------------------------1.00--------------
.............................................................................................................................................................................................................................................................................................................................................................................ACTGTGGACTTTTTGCCAG.......... 191.000.00------------1.00-------------------------------
..................................................................................................................................................................................................................CCTTACCCACGACAAAGTTCCCAGCCACCC.......................................................................................................................................................... 3011.001.00-----------1.00--------------------------------
...............................................................CCTACCCACGACAAAGTTCCCAGCCACCCGCC........................................................................................................................................................................................................................................................................................................... 3231.001.00--1.00-----------------------------------------
.........................................................................................................................................................................................................................................GGTAAGGGCAGGCGGTTC............................................................................................................................................... 181.000.00------------------------------1.00-------------
...........................................................................................................................................TCCCTACCCACGACAAAGTTCCCAGCCACC................................................................................................................................................................................................................................. 3031.001.00--------------------------1.00-----------------
......................................................................................................................................................................................................................................................................................................................................................AGGCCTTCTCTGCCTTTTAG................................ 201.000.00---------------------1.00----------------------
...........................................................................................................................................................................................................................................................................................................................................GAAGGCCTGTAGGGGGCGC............................................ 1911.001.00--------1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................TCACACTGTGACCGAACCCCAGCGGCT................................................................. 2711.001.00----------------------------1.00---------------
..................CCACTGGGGGCTGGAAGA...................................................................................................................................................................................................................................................................................................................................................................... 1820.500.50-----------------------------------------0.50--
...........................................CCTACTCACCACAAAG............................................................................................................................................................................................................................................................................................................................................... 1630.330.33----------------------------------------0.33---
...........................................CTTTGTGGTGAGTAGGA.............................................................................................................................................................................................................................................................................................................................................. 170.330.00----------------------------------------0.33---
.................................................................................................................................................................................................................................................................................................................................................................CAGTGTAGAAGAAGGC......................... 1640.250.25------------------------------------------0.25-
.................................................................................................................................................................................................................................................................................................................................................GAGAAGGCCTGTAGG.......................................... 1570.140.14-------------------------------------------0.14