ID: uc004cjb.1_intron_5_0_chr9_139651621_r.5p
GENE: LCN8(1)
chr9:139652159-139652408-


(7)
B-CELL
(1)
BRAIN
(8)
BREAST
(11)
CELL-LINE
(10)
CERVIX
(2)
HEART
(1)
KIDNEY
(1)
LIVER
(2)
OTHER
(40)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TGCTCCGGGCGCAGGTGGCAGCAGCCATGGAGGAGCTGGACCGGCAGAAGGTGGCTTCTCCTTCTTAGTTGGTGGGGCTCCTCCTACACCCCCAACCCCTCAGGCTCAGGGAAGGAGGCCTCTCCCGGTGTGGGGAGCTCGTGGGGACGCTGGTGCCCGGCTAGACACTTCCTGTTAGCGGCATTTTCTTCTCCGCTGAGTCTGTGCCGGCTGCTGGGCCAGAGGCACATTAGCAGGCCCAGAGAAGGTA
....................................................(((..(((((((((.(((((.(((............))))))))((....))....)))))))))))).(((((......))))).................................................................................................................
..................................................51..........................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040022(GSM532907)
G575N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM532872(GSM532872)
G652T. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR040032(GSM532917)
G603N. (cervix)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................CTCCCGGTGTGGGGACCA...............................................................................................................1825.000.003.003.00-1.00-------2.001.00-2.00-1.00------1.00-1.00--1.001.00---1.00-1.00--1.00--1.001.00--1.001.00-1.00-----------------------------------
.............................................................TTCTTAGTTGGTGGGGC............................................................................................................................................................................1722.502.50------0.50---------0.50---------------------------------------0.50-0.50----------0.50--------------
...............................................................CTTAGTTGGTGGGGCGA..........................................................................................................................................................................172.000.00------------------1.001.00----------------------------------------------------------------
..............................................................TCTTAGTTGGTGGGGC............................................................................................................................................................................1622.002.00-----0.50----------------------------------------------0.50----0.50----------0.50---------------
.............................................................TTCTTAGTTGGTGGGCG............................................................................................................................................................................172.000.00---------------1.00-------------------------------1.00------------------------------------
...........................................................CCTTCTTAGTTGGTGGAGCG...........................................................................................................................................................................202.000.00---------1.00----------------------------------1.00---------------------------------------
...........................................................CCTTCTTAGTTGGTGGAGC............................................................................................................................................................................192.000.00---------------------------1.00---1.00----------------------------------------------------
...............................................................CTTAGTTGGTGGGGCGATT........................................................................................................................................................................192.000.00-------------2.00----------------------------------------------------------------------
...........................TGGAGGAGCTGGACCGGC.............................................................................................................................................................................................................1812.002.00----2.00-------------------------------------------------------------------------------
............................................................CTTCTTAGTTGGTGGAGC............................................................................................................................................................................1841.750.50----0.75-------------0.25---------------------------------------------------0.25--------0.250.25---
.............................................................TTCTTAGTTGGTGGGGCG...........................................................................................................................................................................1821.502.50---0.50-------------------------------------------------------0.500.50-----------------------
..............................................................TCTTAGTTGGTGGGGCGA..........................................................................................................................................................................1821.502.00--------------------------------------------------0.500.50---------------0.50----------------
............................................................CTTCTTAGTTGGTGGAGCG...........................................................................................................................................................................1941.250.50---0.25-----------0.25-0.25---------------------------------------------------------0.250.25-------
...............................................................CTTAGTTGGTGGGGCG...........................................................................................................................................................................161.000.00---1.00--------------------------------------------------------------------------------
.........................................................................................................................CTCCCGGTGTGGGGATCG...............................................................................................................181.000.00------------1.00-----------------------------------------------------------------------
.........................................................................................................................CTCCCGGTGTGGGGACCC...............................................................................................................181.000.001.00-----------------------------------------------------------------------------------
....................................TGGACCGGCAGAAGGCG.....................................................................................................................................................................................................171.000.00-----1.00------------------------------------------------------------------------------
...........................................................CCTTCTTAGTTGGTGGAG.............................................................................................................................................................................181.000.00---------1.00--------------------------------------------------------------------------
..............................................................TCTTAGTTGGTGGGGCG...........................................................................................................................................................................1721.002.00----------------------------------------------------------------0.500.50------------------
...........................................................CCTTCTTAGTTGGTGGAGTG...........................................................................................................................................................................201.000.00--------------------------------1.00---------------------------------------------------
...............................................................CTTAGTTGGTGGGGCGAT.........................................................................................................................................................................181.000.00-------------------------------------------1.00----------------------------------------
.........................................................................................................................CTCCCGGTGTGGGGACCG...............................................................................................................181.000.00--------------------------1.00---------------------------------------------------------
.................................................................................TCCTACACCCCCAACAGC.......................................................................................................................................................181.000.00---------------------------------------1.00--------------------------------------------
.............................................................TTCTTAGTTGGTGGGGCTT..........................................................................................................................................................................191.000.00--------------------1.00---------------------------------------------------------------
.........................................................................................................................CTCCCGGTGTGGGGACAA...............................................................................................................181.000.00----------------------------------------1.00-------------------------------------------
..............................................................TCTTAGTTGGTGGGGGC...........................................................................................................................................................................171.000.00------1.00-----------------------------------------------------------------------------
....................................TGGACCGGCAGAAGGCGG....................................................................................................................................................................................................181.000.00-----1.00------------------------------------------------------------------------------
.............................................................TTCTTAGTTGGTGGGTTG...........................................................................................................................................................................181.000.00------------------------------------1.00-----------------------------------------------
..............................................................TCTTAGTTGGTGGGGCGAT.........................................................................................................................................................................1921.002.00-------------------------------------------------0.50----0.50-----------------------------
.............................................................TTCTTAGTTGGTGGGGCGAT.........................................................................................................................................................................2021.002.50-------------------------------------------------------0.50-------0.50--------------------
.........................................................................................................................CTCCCGGTGTGGGGACCT...............................................................................................................181.000.00-------------------------------------1.00----------------------------------------------
............................................................CTTCTTAGTTGGTGGAG.............................................................................................................................................................................1740.750.50-------------------------------------------------------------0.50----------------0.25-----
............................................................CTTCTTAGTTGGTGG...............................................................................................................................................................................1540.500.50-------------------0.25-------------------------------------------------------------0.25--
..............................................................TCTTAGTTGGTGGGGCGGC.........................................................................................................................................................................1920.502.00-----------------------------------------------------0.50------------------------------
.............................................................TTCTTAGTTGGTGGGGCGA..........................................................................................................................................................................1920.502.50---------------0.50--------------------------------------------------------------------
.............................................................TTCTTAGTTGGTGGGGCGGT.........................................................................................................................................................................2020.502.50------------------------------------------------------------------0.50-----------------
.......................................................................................................................CTCTCCCGGTGTGGG....................................................................................................................1530.330.33-----------------0.33------------------------------------------------------------------
.......................................................................................................................CTCTCCCGGTGTGGGAACC................................................................................................................1930.330.33-----------------0.33------------------------------------------------------------------
.............................................................TTCTTAGTTGGTGGGG.............................................................................................................................................................................1660.330.33----------------------------------------------------------------------0.17------------0.17
.......................................................................................................................CTCTCCCGGTGTGGGAAC.................................................................................................................1830.330.33-----------------0.33------------------------------------------------------------------
............................................................CTTCTTAGTTGGTGGAGTG...........................................................................................................................................................................1940.250.50-----------------------------------------------------------------------------0.25------
......................................................................................................................................................................................ATTTTCTTCTCCGCT.....................................................1550.200.20----------------------------------------------------------------------------------0.20-
...........................................................CCTTCTTAGTTGGTG................................................................................................................................................................................1550.200.20---------------------------------------------------0.20--------------------------------

Antisense strand
TGCTCCGGGCGCAGGTGGCAGCAGCCATGGAGGAGCTGGACCGGCAGAAGGTGGCTTCTCCTTCTTAGTTGGTGGGGCTCCTCCTACACCCCCAACCCCTCAGGCTCAGGGAAGGAGGCCTCTCCCGGTGTGGGGAGCTCGTGGGGACGCTGGTGCCCGGCTAGACACTTCCTGTTAGCGGCATTTTCTTCTCCGCTGAGTCTGTGCCGGCTGCTGGGCCAGAGGCACATTAGCAGGCCCAGAGAAGGTA
....................................................(((..(((((((((.(((((.(((............))))))))((....))....)))))))))))).(((((......))))).................................................................................................................
..................................................51..........................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040022(GSM532907)
G575N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
GSM532872(GSM532872)
G652T. (cervix)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040010(GSM532895)
G529N. (cervix)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR040007(GSM532892)
G601T. (cervix)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR038861(GSM458544)
MM466. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
TAX577579(Rovira)
total RNA. (breast)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR191522(GSM715632)
93genomic small RNA (size selected RNA from t. (breast)
SRR040032(GSM532917)
G603N. (cervix)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040027(GSM532912)
G220T. (cervix)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................TTTTCTTCTCCGCTGAAA................................................. 183.000.00--3.00---------------------------------------------------------------------------------
.............................................................................CTCCTCCTACACCCCCAAGCG........................................................................................................................................................ 212.000.00----------2.00-------------------------------------------------------------------------
...............................................................................................................................................................................................................CGGCTGCTGGGCCAGACGG........................ 192.000.00-------2.00----------------------------------------------------------------------------
........................................................................................................................................................................................TCAGCGGAGAAGAAA................................................... 1531.331.33-------------------------------------------------0.330.33---------------------0.33-0.33---------
.......................................................................................................................................................................................TCAGCGGAGAAGAAAA................................................... 1611.001.00------1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................TTCTCCGCTGAGTCTGTGCCGGCTA..................................... 251.000.00----------------------------------1.00-------------------------------------------------
...........................................................................................................................................................................................CTTCTCCGCTGAGTCGGTC............................................ 191.000.00--------1.00---------------------------------------------------------------------------
...................................................................................................................................................................................CAGCGGAGAAGAAAATGCC.................................................... 1911.001.00------------------------1.00-----------------------------------------------------------
...........................................................................................................................................................................................CTTCTCCGCTGAGTCGGCC............................................ 191.000.00--------1.00---------------------------------------------------------------------------
.........................................CGGCAGAAGGTGGCTCATA.............................................................................................................................................................................................. 191.000.00------------------------------1.00-----------------------------------------------------
...................................................................................................TCAGGCTCAGGGAAGGAGTCCT................................................................................................................................. 221.000.00---------------------1.00--------------------------------------------------------------
.........................................................................................................................................................................................................CTGTGCCGGCTGCTGCTC............................... 181.000.00----------------------1.00-------------------------------------------------------------
........................................................................................................................................................................................TTTCTTCTCCGCTGAC.................................................. 160.670.00-----------------------------------------------------------------------0.33-0.33----------
................................................................................................................................................................................GAAGAAAATGCCGCT........................................................... 1520.500.50--------------------------------------------------------------0.50---------------------
........................................................................................................................................................................................TTTCTTCTCCGCTGACT................................................. 170.330.00-------0.33----------------------------------------------------------------------------
............................CGGTCCAGCTCCTCC............................................................................................................................................................................................................... 1590.110.11-----------------0.11------------------------------------------------------------------