ID: uc004chz.2_intron_12_0_chr9_139401890_r.3p
GENE: (21)
chr9:139401840-139402089-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(18)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(3)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(20)
SKIN 		(1)
TESTES

Sense strand
CAGTGACTCCGGTCACCGAGGCCCCGCCAGGGTCTGTTGGGCTGGGTCTCTCTCCAGGTCTGACAGGAGCGAGGGGCCCGTGGCTTCGCTGGACCTGAGGGCAGCTCATGTGGCCCTGTCAGCCCTCACAGTGGGGTGTGGGAGCACTGCATCCTGGCGCCGGCTGAGCCGAAGGGCCCCTCGTTCTGTCGCCTGCACAGTGCGTGGCCGGCTACCACGGGGTGAACTGCTCTGAGGAGATCGACGAGTG
......................................................(((((..((((.(((((((((((((.((((((.(((((.....(((((.((....)).)))))....(((........(((((((((.....)))))))))))).))))).))))))..)))))))))))))))))))))).......................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532876(GSM532876)
G547T. (cervix)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038855(GSM458538)
D10. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040043(GSM532928)
G428T. (cervix)
.....................................................CCAGGTCTGACAGGAGCGA..................................................................................................................................................................................1918.008.001.00----1.00-----2.00---2.00------1.00-----------------------------------------1.00--
.....................................................CCAGGTCTGACAGGAGCGAGG................................................................................................................................................................................2116.006.00---2.002.00-----1.00--------------------1.00-----------------------------------
....................................................TCCAGGTCTGACAGGAGCGAGGG...............................................................................................................................................................................2314.004.001.00---------------1.00-----------------1.00--------1.00-----------------------
.....................................................CCAGGTCTGACAGGAGCGAG.................................................................................................................................................................................2014.004.00-----1.00--1.001.00----------------------------------1.00----------------------
.....................................................CCAGGTCTGACAGGAGCGAGGGT..............................................................................................................................................................................234.000.00---2.002.00--------------------------------------------------------------
...................GGCCCCGCCAGGGTCGGC.....................................................................................................................................................................................................................184.000.00--4.00----------------------------------------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGGGG..............................................................................................................................................................................2313.003.002.00-------------------------1.00----------------------------------------
..................................................................GAGCGAGGGGCCCGTGCCTT....................................................................................................................................................................203.000.00--------------1.00--------------1.00---------1.00---------------------------
.....................................................CCAGGTCTGACAGGAGCGAGGGAGC............................................................................................................................................................................253.000.00-3.00-----------------------------------------------------------------
...................................................CTCCAGGTCTGACAGGAGCGAGGGG..............................................................................................................................................................................2513.003.00-------3.00-----------------------------------------------------------
...................GGCCCCGCCAGGGTCGG......................................................................................................................................................................................................................173.000.00-----------------1.00---------1.00--------1.00------------------------------
........................................................................................................................................................................................................................................TGAGGAGATCGACGAGGTT192.000.00-------------1.00------------------------1.00----------------------------
.........................................................................................................................................GTGGGAGCACTGCATCCTGGCGCCGGC......................................................................................2712.002.00------------2.00------------------------------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGA................................................................................................................................................................................2112.004.00----------------------------------------------------1.001.00-------------
.......................................................................................................................................................................................................................................CTGAGGAGATCGACGAGGTTG212.000.00------------------1.00----------------------1.00-------------------------
....................................................TCCAGGTCTGACAGGAGCGAGGGG..............................................................................................................................................................................2412.002.001.001.00-----------------------------------------------------------------
....................................................................GCGAGGGGCCCGTGGCGG....................................................................................................................................................................1822.001.00------1.00-------------0.50---------------------------------------------0.50
................................................................................................................................................................................CCCCTCGTTCTGTCGCCTGCA.....................................................2112.002.001.00------------------------------------------------------------1.00-----
.......................................................................................................................................................................................................................CACGGGGTGAACTGCTCTGAGGAGATCG.......2811.001.00------1.00------------------------------------------------------------
..................................................................GAGCGAGGGGCCCGTGCCT.....................................................................................................................................................................191.000.00---------------------------------------------------1.00---------------
.....................................................CCAGGTCTGACAGGAGCGAGGGGCC............................................................................................................................................................................2511.001.001.00------------------------------------------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGGGGCA............................................................................................................................................................................251.000.001.00------------------------------------------------------------------
......................................................CAGGTCTGACAGGAGCGAG.................................................................................................................................................................................1911.001.00--------------------------------------------------------1.00----------
....................................................TCCAGGTCTGACAGGAGCGA..................................................................................................................................................................................2011.001.00--------------------------------------------------1.00----------------
.....................................................................CGAGGGGCCCGTGGCGGGG..................................................................................................................................................................191.000.00------------------------------------------------------1.00------------
.......................................................................................................................................................................................................................................CTGAGGAGATCGACGAGTGT201.000.00-----------------------------------------------------------1.00-------
........................................................................................................................................................................................................................................TGAGGAGATCGACGAGGTTG201.000.00-------------1.00-----------------------------------------------------
....................................................................GCGAGGGGCCCGTGGC......................................................................................................................................................................1621.001.00--------------------1.00----------------------------------------------
....................................................................................................................................................................................................ACAGTGCGTGGCCGGGCCT...................................191.000.00-1.00-----------------------------------------------------------------
.......................................................................................GCTGGACCTGAGGGCATT.................................................................................................................................................181.000.00--------------------------------------------------------------1.00----
.....................................................CCAGGTCTGACAGGAGCGAGAA...............................................................................................................................................................................2211.004.00------------------------------1.00------------------------------------
....................................................TCCAGGTCTGACAGGAGCGAG.................................................................................................................................................................................2111.001.00-------------------------------------1.00-----------------------------
..................................................................GAGCGAGGGGCCCGTGCC......................................................................................................................................................................181.000.00--------------1.00----------------------------------------------------
.....................................................................................................................................................................................CGTTCTGTCGCCTGCACAGTGCGTGGCCGGC......................................3111.001.00----------1.00--------------------------------------------------------
....................................................TCCAGGTCTGACAGGAGCGAGGGA..............................................................................................................................................................................2411.004.00------------------------1.00------------------------------------------
......................................................................GAGGGGCCCGTGGCTTGGAA................................................................................................................................................................201.000.00----------------------------1.00--------------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGGGGCT............................................................................................................................................................................251.000.00----------------1.00--------------------------------------------------
....................GCCCCGCCAGGGTCTGCCC...................................................................................................................................................................................................................191.000.00---------------------------------------------1.00---------------------
............................................................................................................................................................................AGGGCCCCTCGTTCTGT.............................................................1711.001.00-------------------------1.00-----------------------------------------
...................GGCCCCGCCAGGGTCG.......................................................................................................................................................................................................................161.000.00-----------------------1.00-------------------------------------------
...............CCGAGGCCCCGCCAGCCCG........................................................................................................................................................................................................................191.000.00---------------------------------------------------------------1.00---
............................................................................................................................................................................................................................GGTGAACTGCTCTGAGG.............1711.001.00-------------------1.00-----------------------------------------------
.........................................................................................................................................................................CGAAGGGCCCCTCGTTCTGTCGC..........................................................2311.001.00-----------------1.00-------------------------------------------------
............................AGGGTCTGTTGGGCTTGT............................................................................................................................................................................................................181.000.00----------------------------------------------1.00--------------------
.....................................................................................................................................................................................................................................CTCTGAGGAGATCGACGAGCG211.000.00----------------------------------------1.00--------------------------
........................................................................................................................................................................................................................................TGAGGAGATCGACGAGGTCA201.000.00---------------------------------1.00---------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGGGTA.............................................................................................................................................................................241.000.00----------------------------------------------------------1.00--------
....................................................................................................................................................................................................................................GCTCTGAGGAGATCGACGAG..2011.001.00-------------------------------------------------------1.00-----------
.....................................................CCAGGTCTGACAGGAGC....................................................................................................................................................................................1711.001.00--------1.00----------------------------------------------------------
....................................................................GCGAGGGGCCCGTGGCG.....................................................................................................................................................................1721.001.00--0.50--------------------------------------------------------------0.50-
....................................................TCCAGGTCTGACAGGAGCGAGGGGC.............................................................................................................................................................................2511.001.00-----------------------------------------------1.00-------------------
......................................................CAGGTCTGACAGGAGCGAGA................................................................................................................................................................................2011.001.00--------------------------------1.00----------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGGA...............................................................................................................................................................................2211.006.00---------1.00---------------------------------------------------------
........................CGCCAGGGTCTGTTGGGCTGGGTCTCT.......................................................................................................................................................................................................2711.001.00---------------------1.00---------------------------------------------
...................................................CTCCAGGTCTGACAGGAGCGAGGGGC.............................................................................................................................................................................2611.001.00-----1.00-------------------------------------------------------------
.....................................................CCAGGTCTGACAGGAGCGAGT................................................................................................................................................................................2111.004.00------------------------------------------1.00------------------------
......................................................CAGGTCTGACAGGAGCGAGGGGCAA...........................................................................................................................................................................251.000.00------------------------------------------------1.00------------------
..........................................................................................................................................................................................................................GGGGTGAACTGCTCTGAGGAGATCGA......2611.001.00------1.00------------------------------------------------------------
....................................................................................................................................................GCATCCTGGCGCCGGCTGAG..................................................................................2011.001.00-------------------------------------------------1.00-----------------
....................................................................................................................................................GCATCCTGGCGCCGG.......................................................................................1520.500.50-------------------0.50-----------------------------------------------

Antisense strand
CAGTGACTCCGGTCACCGAGGCCCCGCCAGGGTCTGTTGGGCTGGGTCTCTCTCCAGGTCTGACAGGAGCGAGGGGCCCGTGGCTTCGCTGGACCTGAGGGCAGCTCATGTGGCCCTGTCAGCCCTCACAGTGGGGTGTGGGAGCACTGCATCCTGGCGCCGGCTGAGCCGAAGGGCCCCTCGTTCTGTCGCCTGCACAGTGCGTGGCCGGCTACCACGGGGTGAACTGCTCTGAGGAGATCGACGAGTG
......................................................(((((..((((.(((((((((((((.((((((.(((((.....(((((.((....)).)))))....(((........(((((((((.....)))))))))))).))))).))))))..)))))))))))))))))))))).......................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM532876(GSM532876)
G547T. (cervix)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038855(GSM458538)
D10. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040043(GSM532928)
G428T. (cervix)
.............................................................................................................................................................................................CGCCTGCACAGTGCGGCC........................................... 181.000.00------------------------------------------------------------1.00------
................................................................................................................GCCCTGTCAGCCCTCATCTG...................................................................................................................... 201.000.00---------------------------------------------------------1.00---------
................................................................................................................GCCCTGTCAGCCCTCACAGTCTG................................................................................................................... 231.000.00-----------------------------------1.00-------------------------------
................................................................................................................GCCCTGTCAGCCCTCTAAA....................................................................................................................... 191.000.00------------------1.00------------------------------------------------
..............................................................................................................AGGGCTGACAGGGCCA............................................................................................................................ 1640.250.25-----0.25-------------------------------------------------------------