ID: uc004cgs.1_intron_8_0_chr9_138847262_r.3p
GENE: (1)
chr9:138847212-138847461-


(1)
AGO2.ip
(2)
B-CELL
(1)
BREAST
(8)
CELL-LINE
(3)
HEART
(1)
LIVER
(1)
OTHER
(6)
SKIN
(1)
XRN.ip

Sense strand
CTGGGGATCAGCTCACTGGTGCTATGATGCTTCATTTGGCATCTACCATTAGTGGGAATTCTTTAATTTCATCCATGGTGTAATTTCTTAGCTCATAAGAAAACCCAGTAAATTCCTGGTGTAGCTTGGGATGCCAGGTCCTATATTATTAGAATTACGATTTACTTATTTTCTACCTTGAAATTTCTATTTTTCCCCAGTGTGCTCATGGGAGCTTAGAAGATCCCAAAAGTATAACCCATCATAAATT
.......................................................................((((.(((....(((((((.....)))))))..((((.......))))....)))))))........................................................................................................................
....................................................................69............................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR343337SRR343334SRR189785SRR189784SRR343335SRR343336SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................AATTCCTGGTGTAGCGG...........................................................................................................................17232.002.5022.00-1.50-3.501.50---------1.00-1.00-0.50--0.500.50-------
..............................................................................................................AATTCCTGGTGTAGCGGTG.........................................................................................................................19210.502.50-3.50-1.00--2.00-1.50-------1.00---------0.500.500.50--
..............................................................................................................AATTCCTGGTGTAGCGGT..........................................................................................................................1823.502.50-1.000.500.50--0.50-----------------0.500.50-----
..............................................................................................................AATTCCTGGTGTAGC.............................................................................................................................1522.502.50--1.00-----------------0.500.50-------0.50-
..........GCTCACTGGTGCTATCA...............................................................................................................................................................................................................................172.000.00--1.00--1.00-------------------------
.........................................................................................................................................................................................................................AGAAGATCCCAAAAGTATAACCCAT........2511.001.00-----------1.00-------------------
.TGGGGATCAGCTCACATG.......................................................................................................................................................................................................................................181.000.00---1.00---------------------------
.........................................................................CATGGTGTAATTTCTTTCC..............................................................................................................................................................191.000.00-------------1.00-----------------
.......................................................................................................................................................................................................................TTAGAAGATCCCAAAAGTATAACC...........2411.001.00--------------1.00----------------
................................................................................................................................................................................................................TGGGAGCTTAGAAGATGC........................181.000.00----------1.00--------------------
...............................................................................................TAAGAAAACCCAGTAAAATA.......................................................................................................................................201.000.00---1.00---------------------------
.........................................................................................................................................................................................................GTGCTCATGGGAGCTTAGAAG............................2111.001.00---------1.00---------------------
..........................................................................................................................................................................................................................GAAGATCCCAAAAGTATAACCCATCA......2611.001.00------------------1.00------------
...............................................................................................................................GGGATGCCAGGTCCTGAG.........................................................................................................181.000.00-------1.00-----------------------
..............................................................................................................AATTCCTGGTGTAGCGGTT.........................................................................................................................1920.502.50---0.50---------------------------
..............................................................................................................AATTCCTGGTGTAGCA............................................................................................................................1620.502.50-----0.50-------------------------
..............................................................................................................AATTCCTGGTGTAGCGGG..........................................................................................................................1820.502.500.50------------------------------
........................................................................................................................................................AATTACGATTTACTT...................................................................................1530.330.33------------------------------0.33

Antisense strand
CTGGGGATCAGCTCACTGGTGCTATGATGCTTCATTTGGCATCTACCATTAGTGGGAATTCTTTAATTTCATCCATGGTGTAATTTCTTAGCTCATAAGAAAACCCAGTAAATTCCTGGTGTAGCTTGGGATGCCAGGTCCTATATTATTAGAATTACGATTTACTTATTTTCTACCTTGAAATTTCTATTTTTCCCCAGTGTGCTCATGGGAGCTTAGAAGATCCCAAAAGTATAACCCATCATAAATT
.......................................................................((((.(((....(((((((.....)))))))..((((.......))))....)))))))........................................................................................................................
....................................................................69............................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189783SRR343337SRR343334SRR189785SRR189784SRR343335SRR343336SRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
TAX577740(Rovira)
total RNA. (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................AGTGGGAATTCTTTATG....................................................................................................................................................................................... 171.000.00-------1.00-----------------------
.........................................................................................................................................................................................................GTGCTCATGGGAGCTTGATG............................. 201.000.00------------1.00------------------