ID: uc004cfp.3_intron_0_0_chr9_138356697_r.3p
GENE: (2)
chr9:138356647-138356896-


(2)
B-CELL
(2)
BREAST
(8)
CELL-LINE
(1)
HEART
(3)
OTHER
(3)
SKIN

Sense strand
ACCAGCCTGGAGCTGGAAACGTGTGGGGTGAGGCCCACAGGCCGCAGGGGCCTGCGGGGTGCAGAGGGAGTGAAGAGATGTCAGAGAGGGGCCTACTGCCCCCACAGGGCCCCCTTGTTCCCCCCGAGTGGGTTCCCCAGTTTCCCACCCCCACTGCCTTCCCATTTCTTGGTTAACATTTTCTTTCTTTTTTTTTTTAGACAGAGGCTCACTAGTGGCACGATCTTGGCTGATTGCATCTTCCACCTCC
..................................................................................(((((((((((..(((......)))))))))..((((..((..(((((((.....((((...........))))....)))))))...))..))))...)))))................................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782TAX577744(Rovira)
total RNA. (breast)
SRR189784SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTAAG..................................................2445.000.0020.0019.00-5.001.00--------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTAACTC...............................................2614.000.007.003.00-3.00-1.00-------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTAAG....................................................2210.000.001.003.00-2.004.00--------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTCCAG................................................266.000.003.001.00-2.00---------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTCCAG...................................................236.000.001.004.00--1.00--------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTCCAG..................................................245.000.003.001.00-1.00---------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTGGTC....................................................213.000.00--3.00----------------
..............................................................................................................................................................................AACATTTTCTTTCTTTTTTTTTTTTAG.................................................272.000.002.00------------------
..............................................................................................................................................................................AACATTTTCTTTCTTTTTTTTTG.....................................................232.000.001.00---1.00--------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCGTG................................................252.000.00--2.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTCTTG....................................................232.000.00----2.00--------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCCTG................................................252.000.002.00------------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTAATTG...............................................272.000.00-1.00--1.00--------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTAG....................................................232.000.001.001.00-----------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCAAA................................................251.000.00---1.00---------------
....................................................................................AGAGGGGCCTACTGCACG....................................................................................................................................................181.000.00-----1.00-------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCGC.................................................241.000.00--1.00----------------
...............................................................................................................................................................................................TTTTTTTAGACAGAGGCTCACTCCG..................................251.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTAG..................................................2511.001.00--1.00----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTAAG.....................................................211.000.00----1.00--------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTAAAG................................................251.000.00----1.00--------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTCCTG................................................271.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTCG...................................................241.000.001.00------------------
..................................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTAAACC...............................................251.000.00--1.00----------------
.....................................................................................................................................................................................TCTTTCTTTTTTTTTTTAGCAGT..............................................231.000.00-----1.00-------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTAATG.................................................241.000.00-1.00-----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTAATG................................................261.000.00----1.00--------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTCGGC..................................................231.000.00--------1.00----------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCCCA................................................251.000.00-1.00-----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTACTC.................................................261.000.00--1.00----------------
..............................................................................................................................................................................AACATTTTCTTTCTTTTTTTTTTAA...................................................251.000.00----1.00--------------
...................................................................GAGTGAAGAGATGTCACAGT...................................................................................................................................................................201.000.00------------1.00------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCGG.................................................241.000.00--1.00----------------
.................AACGTGTGGGGTGAGGGCA......................................................................................................................................................................................................................191.000.00-----------1.00-------
....................................................................................................................................................................................TTCTTTCTTTTTTTTTTTAGACAGCCT...........................................271.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTATG.....................................................221.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTCATC.................................................261.000.00--1.00----------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCTAT................................................251.000.00-1.00-----------------
.............................GAGGCCCACAGGCCGAAGA..........................................................................................................................................................................................................191.000.00-----1.00-------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTAATT................................................2731.000.33--1.00----------------
..............................................................................................................................................................................AACATTTTCTTTCTTTTTTTTTTTTCAA................................................281.000.00--1.00----------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTAAACT...............................................261.000.00-1.00-----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTATG.................................................251.000.001.00------------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTTAGGACA..............................................211.000.00--1.00----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTGTTG...................................................231.000.001.00------------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTAGGG................................................251.000.00--1.00----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTCACG...................................................231.000.00----1.00--------------
.......................................................................................................................................................................................TTTCTTTTTTTTTTTAGACAGGGAA..........................................251.000.00--1.00----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTGGTA..................................................241.000.00-----1.00-------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTAATTC...............................................261.000.001.00------------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTAG...................................................231.000.00---1.00---------------
............................................................................................................................................................................TTAACATTTTCTTTCTGGCG..........................................................201.000.00-----1.00-------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTCCG....................................................221.000.00---1.00---------------
......................................................................................................................................................................................CTTTCTTTTTTTTTTTAGGCGG..............................................221.000.00--1.00----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTCAAG................................................261.000.00----1.00--------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTCTG....................................................221.000.001.00------------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCCC.................................................241.000.00----1.00--------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTCTGG................................................271.000.00--1.00----------------
...................................................................................................................................................................................TTTCTTTCTTTTTTTTTTTAGCTA...............................................241.000.00-------------1.00-----
............................................................................................................................................................................TTAACATTTTCTTTCTTTTTTTCAG.....................................................251.000.00---1.00---------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTCAAG...................................................231.000.00----1.00--------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTGC..................................................251.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTCTTG..................................................251.000.00---1.00---------------
..................................................................................................................................................................................TTTTCTTTCTTTTTTTTTTTAGAAAAG.............................................271.000.001.00------------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTTTCTGG................................................251.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTGG..................................................251.000.001.00------------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTCTTG...................................................241.000.00---1.00---------------
.................................................................................................................................................................................ATTTTCTTTCTTTTTTTTTCCG...................................................221.000.00----1.00--------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTAG....................................................221.000.00---1.00---------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTCG..................................................241.000.00---1.00---------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTCAG......................................................211.000.00--1.00----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTAGA..................................................251.000.00--1.00----------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTCCG...................................................231.000.001.00------------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTATG.................................................2630.670.33--------------0.67----
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTAG..................................................2420.500.500.50------------------
................................................................................................................................................................................CATTTTCTTTCTTTTTTTTTTTAGT.................................................2520.500.500.50------------------
..........................................................................................................................................................................................................................CACGATCTTGGCTGATT...............1730.330.33---------------0.33---
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTAATTG...............................................2830.330.33--0.33----------------
...............................................................................................................................................................................ACATTTTCTTTCTTTTTTTTTTTA...................................................2430.330.330.33------------------
..............................................................................................................CCCCTTGTTCCCCCC.............................................................................................................................1570.140.14------------------0.14
......................................................CGGGGTGCAGAGGGA.....................................................................................................................................................................................1580.120.12----------------0.12--

Antisense strand
ACCAGCCTGGAGCTGGAAACGTGTGGGGTGAGGCCCACAGGCCGCAGGGGCCTGCGGGGTGCAGAGGGAGTGAAGAGATGTCAGAGAGGGGCCTACTGCCCCCACAGGGCCCCCTTGTTCCCCCCGAGTGGGTTCCCCAGTTTCCCACCCCCACTGCCTTCCCATTTCTTGGTTAACATTTTCTTTCTTTTTTTTTTTAGACAGAGGCTCACTAGTGGCACGATCTTGGCTGATTGCATCTTCCACCTCC
..................................................................................(((((((((((..(((......)))))))))..((((..((..(((((((.....((((...........))))....)))))))...))..))))...)))))................................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782TAX577744(Rovira)
total RNA. (breast)
SRR189784SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................GAGGGAGTGAAGAGAGATC........................................................................................................................................................................ 193.000.00------1.001.00--1.00--------
............................................................................................................................................................................TTAACATTTTCTTTCTTTC........................................................... 191.000.00---------1.00---------
...............................................................GAGGGAGTGAAGAGAGGTT........................................................................................................................................................................ 191.000.00------1.00------------
.............................................................CAGAGGGAGTGAAGAGATCT......................................................................................................................................................................... 201.000.00------1.00------------
...............................................................GAGGGAGTGAAGAGAGGT......................................................................................................................................................................... 181.000.00------1.00------------
...............................................................GAGGGAGTGAAGAGAGTCC........................................................................................................................................................................ 191.000.00-------1.00-----------
.............................................................TCTCTTCACTCCCTCTG............................................................................................................................................................................ 1750.200.20-----------------0.20-
........................................................................CCTCTCTGACATCTCTT................................................................................................................................................................. 1760.170.17----------------0.17--