ID: uc004cfe.2_intron_8_0_chr9_137623974_f.3p
GENE: (9)
chr9:137630120-137630369+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
BRAIN 		(6)
BREAST 		(11)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CTGCCAGCGAGTGCCAGGAGGACAGCCACTGAGGCCCCACCACAGGCCCCCTTTGCAGTCTGTGCTCGTGACTCCCCAGGACAGCAGGAGCTGAGCCAGGGCCTCTTGTGCATGCAGCTGAAGGCCGTCCACACCACTGGGGTCTGGGGTGTCGGGAGGGATGGGCTGCGGTCTCAGACGCCCTCTCTCTGTCTCCCCAGGGCATGCTCATCGAGGGCCCGCCTGGCCCAGAAGGCCCCGCGGTGAGTAT
..............................................................................................................................................(((((((.....(((((((.((((....(((...))))))))))))))....))))))).................................................
........................................................................................................................................137..................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
.............................................................................................................................................GTCTGGGGTGTCGGGAGGGATGG......................................................................................2315.005.00-4.001.00--------------------------------------
..............................................................................................................................................TCTGGGGTGTCGGGAGGGATGG......................................................................................2214.004.00--1.00------2.00-----1.00-------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCATTT................................................213.000.00-------------1.00-----1.00---1.00-----------------
..............................................................................................................................................TCTGGGGTGTCGGGAGGGATG.......................................................................................2113.003.00---1.00--2.00----------------------------------
.............................................................................................................................................GTCTGGGGTGTCGGGAGTAAA........................................................................................213.000.00-3.00---------------------------------------
.......................................................................................................................................................TCGGGAGGGATGGGCTGCGG...............................................................................2013.003.00-----2.00-----------------------------1.00-----
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGTTT...............................................222.000.001.00-------------------1.00--------------------
.......................................................................................................................................................TCGGGAGGGATGGGCTGCGGTA.............................................................................222.000.00----2.00------------------------------------
..............................................................................................................................................TCTGGGGTGTCGGGAGGGATGGGC....................................................................................2412.002.001.00-----------1.00----------------------------
...............................................................................................................................................CTGGGGTGTCGGGAGGGATGGGT....................................................................................2312.001.002.00----------------------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGA.................................................202.000.00-----------1.00------1.00----------------------
................................................................................................................................................TGGGGTGTCGGGAGGGATGGGCA...................................................................................232.000.002.00----------------------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGATT...............................................222.000.00--------2.00--------------------------------
...............................................................................................................................................CTGGGGTGTCGGGAGGGATGG......................................................................................2112.002.00--1.00----------------------1.00---------------
........................................................................................................................................................CGGGAGGGATGGGCTGCGG...............................................................................1911.001.00---------------------------1.00-------------
...........................................................................................................................................................................................................................CGCCTGGCCCAGAAGGCCCCGC.........2211.001.00--------------1.00--------------------------
.................................................................................................................................................GGGGTGTCGGGAGGGATGGG.....................................................................................2011.001.001.00----------------------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGTT................................................211.000.00----------------1.00------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGAT................................................211.000.00-----------------1.00-----------------------
...............................................................................................................................................CTGGGGTGTCGGGAGGGATGGGCA...................................................................................2411.001.00----------------------1.00------------------
..............................................................................................................................................TCTGGGGTGTCGGGAGGGATGGGCTG..................................................................................2611.001.00----------------------------1.00------------
................................................................................................................................................TGGGGTGTCGGGAGGGATGGG.....................................................................................2111.001.00---1.00-------------------------------------
................................................................................................................................................TGGGGTGTCGGGAGGGATGGGCAA..................................................................................241.000.00-------------------------------------1.00---
.................................................................................................................................................GGGGTGTCGGGAGGGCACC......................................................................................191.000.00------------------------------------1.00----
..............................................................................................................................................TCTGGGGTGTCGGGAGGGATGGAA....................................................................................2411.004.00------------------------------1.00----------
............................................................................CAGGACAGCAGGAGCTGGC...........................................................................................................................................................191.000.00----------------------------------1.00------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGTTA...............................................221.000.00---------------------1.00-------------------
..............................................................................................................................................TCTGGGGTGTCGGGAGGGATGGGT....................................................................................241.000.00--1.00--------------------------------------
...............................................................................................................................................CTGGGGTGTCGGGAGGGATGGG.....................................................................................2211.001.00---1.00-------------------------------------
...........................................................................................................................................................................................................ATGCTCATCGAGGGCCCGCCTGGCC......................2511.001.00--------------------------------1.00--------
.......................................................................................................................................................TCGGGAGGGATGGGCTGTGG...............................................................................201.000.00-------------------------------1.00---------
...............................................................................................................................................CTGGGGTGTCGGGAGGGATGGA.....................................................................................2211.002.00----1.00------------------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGATA...............................................221.000.00--------------------------1.00--------------
....................................................................................................................................ACCACTGGGGTCTGGAGG....................................................................................................181.000.00----------1.00------------------------------
..................................................................................................................................ACACCACTGGGGTCTCG.......................................................................................................171.000.00----------1.00------------------------------
.....................................................................................................................................................................................CCTCTCTCTGTCTCCCCAGCAT...............................................221.000.00-----------------------------1.00-----------
...............................................................................................................................................CTGGGGTGTCGGGAGGGATGGGC....................................................................................2311.001.00------------------------1.00----------------
.............................................................................................................................................GTCTGGGGTGTCGGGAGGGAT........................................................................................2111.001.00--1.00--------------------------------------
...........................................................................................................................................................................TCTCAGACGCCCTCT................................................................1540.250.25---------------------------------------0.25-

Antisense strand
CTGCCAGCGAGTGCCAGGAGGACAGCCACTGAGGCCCCACCACAGGCCCCCTTTGCAGTCTGTGCTCGTGACTCCCCAGGACAGCAGGAGCTGAGCCAGGGCCTCTTGTGCATGCAGCTGAAGGCCGTCCACACCACTGGGGTCTGGGGTGTCGGGAGGGATGGGCTGCGGTCTCAGACGCCCTCTCTCTGTCTCCCCAGGGCATGCTCATCGAGGGCCCGCCTGGCCCAGAAGGCCCCGCGGTGAGTAT
..............................................................................................................................................(((((((.....(((((((.((((....(((...))))))))))))))....))))))).................................................
........................................................................................................................................137..................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR191444(GSM715554)
109genomic small RNA (size selected RNA from . (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
..................................................................................................GGGCCTCTTGTGCATGC....................................................................................................................................... 172.000.00-------2.00---------------------------------
...........................................................................................................................................................................TCTCAGACGCCCTCTCTCTTAAA........................................................ 231.000.00---------------------------------1.00-------
.................................GGGGCCTGTGGTGGGGC........................................................................................................................................................................................................ 1740.250.25--------------------------------------0.25--
...........................................................................................................................CAGTGGTGTGGACGGC............................................................................................................... 1660.170.17----------------------------------------0.17