ID: uc004cfe.2_intron_22_0_chr9_137658900_f
GENE: (23)
chr9:137658850-137659205+


(1)
AGO2.ip
(4)
BRAIN
(4)
BREAST
(7)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(6)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
CCCAGGGAGAGCCTGGCCCCCCAGGACAGCAGGGTAATCCAGGCGCCCAGGTAAGTGAGCCTGAGAGAGGCAGCTCGCAGGGATCCGGCCGTGGGAGGCACACGTCTCCAGTCCGGAGCCCTGGGAGGAAGCGGGGAGCTCTGTCCCCTCCAAGTAGCAGCCCCTCCCCTTATCTGGAGGGAGACTAGGACCTGGGTTGGTGCCTGGATGAGGGAGACATCAATGAGAAGATGGACAGATGGCAGGGGAGGGTTCTGAGTCAATCAGCGCCCTCACCTTCCCTTTCTGGCTCTTTCTCCCTCTTAGGGTCTTCCAGGCCCCCAGGGTGCAATTGGTCCTCCAGGAGAAAAGGTAGG
.........................................................................(((.(((((.(((((.....((((((....))))))...))))).))))).)))....((((...((..((((((((((..(((............)))..))))))).)))..)).))))..................................................................................................................................................................
..................................................................67...............................................................................................................................196..............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR189782SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189784SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189783DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR343335
.......................................................................AGCTCGCAGGGATCCAAA...........................................................................................................................................................................................................................................................................1823.000.0023.00------------------------------------------
...AGGGAGAGCCTGGCCCT................................................................................................................................................................................................................................................................................................................................................174.000.00--4.00----------------------------------------
...AGGGAGAGCCTGGCCCTGT..............................................................................................................................................................................................................................................................................................................................................193.000.00-------------1.00-----------1.00------1.00----------
.........AGCCTGGCCCCCCAGGACAGCAG....................................................................................................................................................................................................................................................................................................................................2313.003.00-----3.00-------------------------------------
.......................................................................AGCTCGCAGGGATCCCAA...........................................................................................................................................................................................................................................................................182.000.002.00------------------------------------------
...AGGGAGAGCCTGGCCCTG...............................................................................................................................................................................................................................................................................................................................................182.000.00-----------------1.00-----1.00-------------------
..............................................................................................................................................................................................................................ATGAGAAGATGGACAGATGGCAGGGGA...........................................................................................................2712.002.00----2.00--------------------------------------
...........................................................................................................................................................................ATCTGGAGGGAGACTAGGACC....................................................................................................................................................................2112.002.00------2.00------------------------------------
......................................................................................................................................................................CCCTTATCTGGAGGGAGACTAGG.......................................................................................................................................................................2311.001.00-------------------1.00-----------------------
......................................................................................................................................................................................................................................................................................................................TTCCAGGCCCCCAGGATAG...........................191.000.00---1.00---------------------------------------
................................................................................................................................................CCCCTCCAAGTAGCATTG..................................................................................................................................................................................................181.000.00---1.00---------------------------------------
......................................................................................................................................................................................................................................................................................TCCCTTTCTGGCTCTTTCTCCCTAAAA...................................................271.000.00------------------------------------1.00------
..................................................................................................................................................................................................................................................................................................................................AGGGTGCAATTGGTCCTC................1811.001.00--------------1.00----------------------------
..........................................................GCCTGAGAGAGGCAGCTCGTTAA...................................................................................................................................................................................................................................................................................231.000.001.00------------------------------------------
.......................................................................AGCTCGCAGGGATCCCAAA..........................................................................................................................................................................................................................................................................191.000.001.00------------------------------------------
..................................................................................................................................................................................................................................................CAGGGGAGGGTTCTGAGTCAAT............................................................................................2211.001.00----------1.00--------------------------------
....................CCAGGACAGCAGGGTAATCCAGGCGCCCAG..................................................................................................................................................................................................................................................................................................................3011.001.00--------------------------1.00----------------
...AGGGAGAGCCTGGCCCCCCAGGAC.........................................................................................................................................................................................................................................................................................................................................2411.001.00----1.00--------------------------------------
.............................................................................................................................................................................................................................AATGAGAAGATGGACCGG.....................................................................................................................181.000.00-----------------------------------1.00-------
...........................AGCAGGGTAATCCAGGAC.......................................................................................................................................................................................................................................................................................................................181.000.00---------1.00---------------------------------
................................................................................................................CCGGAGCCCTGGGAGGAGTTA...............................................................................................................................................................................................................................211.000.00----------------------1.00--------------------
............................................................................................................................................................................................................................................................................................TCTGGCTCTTTCTCCCGATG....................................................201.000.00---1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................TTCTGGCTCTTTCTCCCTCTTAGT.................................................241.000.00---------------------------1.00---------------
..........................................................................................................................................................................................................................................................................................TTTCTGGCTCTTTCTCACA.......................................................191.000.00-1.00-----------------------------------------
.......................................................................................................................CCTGGGAGGAAGCGGCTTT..........................................................................................................................................................................................................................191.000.00---------------------1.00---------------------
...................................................................................................................................CGGGGAGCTCTGTCCCA................................................................................................................................................................................................................171.000.00--------------------------------------1.00----
.......................................................................................................GTCTCCAGTCCGGAGGTC...........................................................................................................................................................................................................................................181.000.00-1.00-----------------------------------------
.....................CAGGACAGCAGGGTAATCCAGGCGCCCA...................................................................................................................................................................................................................................................................................................................2811.001.00-----------------------------1.00-------------
........................................................................GCTCGCAGGGATCCGGCCGTG.......................................................................................................................................................................................................................................................................2111.001.00------------1.00------------------------------
............................................................................................................................................................................TCTGGAGGGAGACTAGGACCTG..................................................................................................................................................................2211.001.00-------1.00-----------------------------------
.......................................................................AGCTCGCAGGGATCCAAC...........................................................................................................................................................................................................................................................................181.000.001.00------------------------------------------
............................................................................................................................................................................................................................................................................................TCTGGCTCTTTCTCCCTATG....................................................201.000.00-1.00-----------------------------------------
...................CCCAGGACAGCAGGGTAATCCA...........................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------1.00--------
...AGGGAGAGCCTGGCCCCAC..............................................................................................................................................................................................................................................................................................................................................191.000.00---------------1.00---------------------------
..............................................................................................................................................................................................................GATGAGGGAGACATCAATGAGAAGATGGAC........................................................................................................................3011.001.00--------1.00----------------------------------
.....................................................................................................ACGTCTCCAGTCCGGAGCTGT..........................................................................................................................................................................................................................................211.000.00-1.00-----------------------------------------
............................................................................................................................GAGGAAGCGGGGAGCCTG......................................................................................................................................................................................................................181.000.00-------------------------------1.00-----------
.......................................................................AGCTCGCAGGGATCCTAA...........................................................................................................................................................................................................................................................................181.000.001.00------------------------------------------
....................................................................................................................................................................................................................................................................................................................TCTTCCAGGCCCCCAGG...............................1720.500.50---------------------------------------0.50---

Antisense strand
CCCAGGGAGAGCCTGGCCCCCCAGGACAGCAGGGTAATCCAGGCGCCCAGGTAAGTGAGCCTGAGAGAGGCAGCTCGCAGGGATCCGGCCGTGGGAGGCACACGTCTCCAGTCCGGAGCCCTGGGAGGAAGCGGGGAGCTCTGTCCCCTCCAAGTAGCAGCCCCTCCCCTTATCTGGAGGGAGACTAGGACCTGGGTTGGTGCCTGGATGAGGGAGACATCAATGAGAAGATGGACAGATGGCAGGGGAGGGTTCTGAGTCAATCAGCGCCCTCACCTTCCCTTTCTGGCTCTTTCTCCCTCTTAGGGTCTTCCAGGCCCCCAGGGTGCAATTGGTCCTCCAGGAGAAAAGGTAGG
.........................................................................(((.(((((.(((((.....((((((....))))))...))))).))))).)))....((((...((..((((((((((..(((............)))..))))))).)))..)).))))..................................................................................................................................................................
..................................................................67...............................................................................................................................196..............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)
SRR189782SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189784SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040019(GSM532904)
G701T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040028(GSM532913)
G026N. (cervix)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532886(GSM532886)
G850T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337SRR037933(GSM510471)
293cand4_rep2. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189783DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR343335
...................................................................................................................................................................................................................................................................TCAATCAGCGCCCTCAATAG............................................................................. 204.000.00-4.00-----------------------------------------
.................................................................................................................................................................................................................................................................AGTCAATCAGCGCCCTCAATGC............................................................................. 221.000.00-1.00-----------------------------------------
.........................................................................................................................................GCTCTGTCCCCTCCAAACAA....................................................................................................................................................................................................... 201.000.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................................................AGTCAATCAGCGCCCTCAATGT............................................................................. 221.000.00----------------1.00--------------------------
..........................................................................................................................................CTCTGTCCCCTCCAAGTATCC..................................................................................................................................................................................................... 211.000.00------------------------1.00------------------
..................................................................................................................................................................................................................................................................TGAGGGCGCTGATTGAC................................................................................. 1711.001.00-----------1.00-------------------------------
.................................................................................................................................................................................................................................................................AGTCAATCAGCGCCCTCAAGGT............................................................................. 221.000.00--------------------1.00----------------------
....................................................................................................................................................................................................................................................................CAATCAGCGCCCTCATAT.............................................................................. 181.000.00------------------------------1.00------------
.................................................................................................................CGGAGCCCTGGGAGGACC................................................................................................................................................................................................................................. 181.000.001.00------------------------------------------
...............................................................................................................................GAAGCGGGGAGCTCTTACT.................................................................................................................................................................................................................. 191.000.00-1.00-----------------------------------------
...................................................................................................................GAGCCCTGGGAGGAATTGC.............................................................................................................................................................................................................................. 191.000.00---------------------------------1.00---------
.................................................................................................................................................................................................................................................................AGTCAATCAGCGCCCTCATTGT............................................................................. 221.000.00------------------1.00------------------------
.......................................................................................................................................................................................................................................................................TCAGCGCCCTCACCTTCGT.......................................................................... 191.000.00----------------------------1.00--------------
.........................................................................................................CTCCAGTCCGGAGCCGGG......................................................................................................................................................................................................................................... 181.000.00-------------------------------------1.00-----
.....................................................................................................................................................................................................................................CCTGCCATCTGTCCATC.............................................................................................................. 1740.250.25-------0.25-----------------------------------
........................................................................................................................................................................CTCCCTCCAGATAAG............................................................................................................................................................................. 1580.120.12------------------------------------------0.12
.............................................................................................................................................TACTTGGAGGGGACA........................................................................................................................................................................................................ 1580.120.12----------------------------------------0.12--
..............................................................CGAGCTGCCTCTCTC....................................................................................................................................................................................................................................................................................... 1580.120.12-----------------------------------------0.12-
........................................................................................................................................................................CTTATCTGGAGGGAGATT.......................................................................................................................................................................... 180.120.00----------------------------------------0.12--