ID: uc004cep.3_intron_12_0_chr9_136578247_r.3p
GENE: (8)
chr9:136578197-136578446-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
B-CELL 		(7)
BRAIN 		(7)
BREAST 		(11)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(5)
LIVER 		(1)
OTHER 		(5)
SKIN 		(2)
UTERUS

Sense strand
GGAGGGGCTCAGAGAGCACGGGCAGGAGCCAGCGGGGAGGCCCCCATGAGGAAGTGGCGCTGAGCAGGGCCTAGAGGAGGGAGGGGGTTGGGTGGAGGGGCCCCTGCAGACCCTGCCTGATCACTGCTCTCTTGGAAGACCTCACCCCAAGAGTATGTGCACTGCAAAAGGGACTCCAGGCCTCTCTCTCCTTCTTTCAGAATCCTTCACGCCCGACCACAAGCCCCTGATGGGGGAGGCACCTGAGCTC
..............................................................................((((..((((.(((((.(((....))).))..))).))))..)).))...(((((((...........))))))).................................................................................................
.............................................................................78..............................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		TAX577746(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040015(GSM532900)
G623T. (cervix)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
..................................................................................GGGGGTTGGGTGGAGGCTCT....................................................................................................................................................2014.000.0010.00-2.00--------------------1.00------------------1.00---------
..................................................................................GGGGGTTGGGTGGAGGCTC.....................................................................................................................................................195.000.003.00-2.00-------------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGTAGTT.........................................................................................................................................................224.000.00-----3.00---------------------------------1.00------------
..................................................................................GGGGGTTGGGTGGAGGCT......................................................................................................................................................184.000.00------------1.00--------1.00---------1.001.00-------------------
...................................................................................GGGGTTGGGTGGAGGCTCT....................................................................................................................................................193.000.00------2.00-------1.00-------------------------------------
.......................................................................................................................................AAGACCTCACCCCAAAAAG................................................................................................192.000.00-----------2.00----------------------------------------
...................................................................................GGGGTTGGGTGGAGGCTAT....................................................................................................................................................192.000.00----------------------1.00-----1.00-----------------------
...........................................................................GGAGGGAGGGGGTTGGATGT...........................................................................................................................................................201.000.00-------------1.00--------------------------------------
................................................AGGAAGTGGCGCTGAGGGG.......................................................................................................................................................................................191.000.00--------------------------1.00-------------------------
..................................................................................GGGGGTTGGGTGGAGGATAG....................................................................................................................................................201.000.001.00---------------------------------------------------
...........................................................................GGAGGGAGGGGGTTGACTA............................................................................................................................................................191.000.00----1.00-----------------------------------------------
.............................................................................................................................................................................................................................AGCCCCTGATGGGGGAGGCA.........2011.001.00-1.00--------------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGATT............................................................................................................................................................191.000.00-----------------1.00----------------------------------
................................................AGGAAGTGGCGCTGAGCAG.......................................................................................................................................................................................1911.001.00---------------------------------------------1.00------
.....................................................................................................................................................................................................................CGACCACAAGCCCCTGATG..................1911.001.00-1.00--------------------------------------------------
............................................................................GAGGGAGGGGGTTGGATAG...........................................................................................................................................................191.000.00---1.00------------------------------------------------
.................................................................................................................................................................CTGCAAAAGGGACTCGTT.......................................................................181.000.00--------1.00-------------------------------------------
............................................................................GAGGGAGGGGGTTGGATAA...........................................................................................................................................................191.000.00-------------------------------------1.00--------------
...........................................................................GGAGGGAGGGGGTTGGGTAGTG.........................................................................................................................................................221.000.00------------------1.00---------------------------------
..................................................................................GGGGGTTGGGTGGAGGATCT....................................................................................................................................................201.000.00--1.00-------------------------------------------------
.............................................................................................................................................................................................................................AGCCCCTGATGGGGGAGGCACCT......2311.001.00-1.00--------------------------------------------------
............................................................................GAGGGAGGGGGTTGGGTGGTTAT.......................................................................................................................................................231.000.00---1.00------------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGGCGT..........................................................................................................................................................211.000.00-------------------------------------------1.00--------
................................................................................GAGGGGGTTGGGTGGATAGG......................................................................................................................................................201.000.00---------------1.00------------------------------------
...............................................................................GGAGGGGGTTGGGTGCTC.........................................................................................................................................................181.000.00----------1.00-----------------------------------------
............................................................................GAGGGAGGGGGTTGGTTCA...........................................................................................................................................................191.000.00----1.00-----------------------------------------------
............................................................................GAGGGAGGGGGTTGGAGAG...........................................................................................................................................................191.000.00----1.00-----------------------------------------------
........................................CCCCCATGAGGAAGTGGC................................................................................................................................................................................................1811.001.00------------------------------------1.00---------------
...........................................................................GGAGGGAGGGGGTTGGATGG...........................................................................................................................................................201.000.00----------1.00-----------------------------------------
...................................................................................GGGGTTGGGTGGAGGCTAG....................................................................................................................................................191.000.00--------------------1.00-------------------------------
...................................................................................GGGGTTGGGTGGAGGCATT....................................................................................................................................................191.000.00------1.00---------------------------------------------
..................................................................................GGGGGTTGGGTGGAGGAT......................................................................................................................................................181.000.00-----------------------------------1.00----------------
...........................................................................GGAGGGAGGGGGTTGGAT.............................................................................................................................................................181.000.00----------------1.00-----------------------------------
................................................AGGAAGTGGCGCTGAGCAGGGCCTAGAG..............................................................................................................................................................................2811.001.00---------1.00------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGTAAT..........................................................................................................................................................211.000.00------------1.00---------------------------------------
............................................................................GAGGGAGGGGGTTGGTTTG...........................................................................................................................................................191.000.00---------------1.00------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGGGAA..........................................................................................................................................................211.000.00----1.00-----------------------------------------------
......................................................................................................................................................................................................................................TGGGGGAGGCACCTGAGC..1811.001.00---------1.00------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGATA............................................................................................................................................................191.000.00-------------------------1.00--------------------------
...........................................................................GGAGGGAGGGGGTTGGAGTA...........................................................................................................................................................201.000.00--------------1.00-------------------------------------
........................................................................AGAGGAGGGAGGGGGTGG................................................................................................................................................................181.000.00----------------------------------1.00-----------------
............................................................................GAGGGAGGGGGTTGGGTGGGTT........................................................................................................................................................221.000.00---1.00------------------------------------------------
............................................................................GAGGGAGGGGGTTGGGTGGCTA........................................................................................................................................................221.000.00---1.00------------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGCG............................................................................................................................................................191.000.00-----------------------------------------1.00----------
...........................................................................GGAGGGAGGGGGTTGGGTGGTTT........................................................................................................................................................2321.000.50-------------0.50--0.50-----------------------------------
.................................................................................................................................................................................................................................CCTGATGGGGGAGGCACCTG.....2011.001.00-------------------1.00--------------------------------
............................................................................GAGGGAGGGGGTTGGGTGGGTG........................................................................................................................................................221.000.00---1.00------------------------------------------------
...................................................................................................................................................CAAGAGTATGTGCACTGCAAAAGGGA.............................................................................2611.001.00-1.00--------------------------------------------------
..................................................................................GGGGGTTGGGTGGAGGCTCA....................................................................................................................................................201.000.00-----------------------------1.00----------------------
............................................................................GAGGGAGGGGGTTGGATTA...........................................................................................................................................................191.000.00------------------------1.00---------------------------
........................................................................AGAGGAGGGAGGGGGTTTAGG.............................................................................................................................................................211.000.00----------1.00-----------------------------------------
.................................................................................................................................................................................................................................CCTGATGGGGGAGGCATA.......181.000.00-1.00--------------------------------------------------
..........................................................................................................CAGACCCTGCCTGATCACTGC...........................................................................................................................2111.001.00---------1.00------------------------------------------
...................................................................................GGGGTTGGGTGGAGGCT......................................................................................................................................................171.000.00-----1.00----------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGTGGT..........................................................................................................................................................2121.000.50-----------------0.50--------------------------0.50-------
..................................................................................GGGGGTTGGGTGGAGGCTG.....................................................................................................................................................191.000.00----1.00-----------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGTGGCT.........................................................................................................................................................2220.500.50----------------------------------------------0.50-----
...........................................................................GGAGGGAGGGGGTTGGGTGGTT.........................................................................................................................................................2220.500.50-----0.50----------------------------------------------
...........................................................................GGAGGGAGGGGGTTGGGTGGTTTT.......................................................................................................................................................2420.500.50-----------------------------------------------0.50----
...........................................................................GGAGGGAGGGGGTTGGGTGGTTA........................................................................................................................................................2320.500.50------------------0.50---------------------------------
...........................................................................GGAGGGAGGGGGTTGGGTGTT..........................................................................................................................................................2120.500.50--------------------------------------------------0.50-
...........................................................................GGAGGGAGGGGGTTGGGTGG...........................................................................................................................................................2020.500.50-------------------------------------------------0.50--
...........................................................................GGAGGGAGGGGGTTGGGTG............................................................................................................................................................1920.500.50--------------------------------------------0.50-------
...........GAGAGCACGGGCAGGA...............................................................................................................................................................................................................................1620.500.50------------------------------------------------0.50---
...........................................................................GGAGGGAGGGGGTTGGGTGGTAG........................................................................................................................................................2320.500.50-------------0.50--------------------------------------

Antisense strand
GGAGGGGCTCAGAGAGCACGGGCAGGAGCCAGCGGGGAGGCCCCCATGAGGAAGTGGCGCTGAGCAGGGCCTAGAGGAGGGAGGGGGTTGGGTGGAGGGGCCCCTGCAGACCCTGCCTGATCACTGCTCTCTTGGAAGACCTCACCCCAAGAGTATGTGCACTGCAAAAGGGACTCCAGGCCTCTCTCTCCTTCTTTCAGAATCCTTCACGCCCGACCACAAGCCCCTGATGGGGGAGGCACCTGAGCTC
..............................................................................((((..((((.(((((.(((....))).))..))).))))..)).))...(((((((...........))))))).................................................................................................
.............................................................................78..............................................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR040036(GSM532921)
G243N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		TAX577746(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040015(GSM532900)
G623T. (cervix)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
.....................................................................................................................................................................................................TGTGGTCGGGCGTGAAGGATTCTG............................. 2412.002.00-------2.00--------------------------------------------
...................................................................................................................................................................................GCCTCTCTCTCCTTCTACGG................................................... 201.000.00---------------------------------1.00------------------
......................................................................................................................................GAAGACCTCACCCCAGGGT................................................................................................. 191.000.00----------------------------------------1.00-----------
.......................................................................................................................................................................................................CGGGCGTGAAGGATTC................................... 1611.001.00------------------------------1.00---------------------
.............................................................................................................................................................................CTCCAGGCCTCTCTCTGTC.......................................................... 191.000.00-1.00--------------------------------------------------
.....................................................................................................................................................................................................TGGTCGGGCGTGAAGGATTCTG............................... 2211.001.00-------1.00--------------------------------------------
..............................................................................................................................................................................................................ATCAGGGGCTTGTGGTCGGGCGTGA................... 2511.001.00--------1.00-------------------------------------------
..............................................................................GGGAGGGGGTTGGGTGGGCCT....................................................................................................................................................... 211.000.00---------------------------1.00------------------------
....................................................................................................CCCCTGCAGACCCTGAGGC................................................................................................................................... 191.000.00--------------------------------------1.00-------------
..................................................................................................................................................................................................................GCCCGACCACAAGCCCCTGATTTGA............... 251.000.00--------1.00-------------------------------------------
...................................................................................................................................................................................AAGAAGGAGAGAGAGGC...................................................... 1780.120.12---------------------------------------------------0.12