ID: uc004cee.2_intron_3_0_chr9_136339211_r.5p
GENE: (6)
chr9:136339883-136340132-


(1)
B-CELL
(2)
BRAIN
(15)
BREAST
(6)
CELL-LINE
(12)
CERVIX
(2)
HEART
(1)
HELA
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(1)
RRP40.ip
(21)
SKIN

Sense strand
CCATCCTGGTCTACCTGCAGTCCATCTTCGACAGCACCGCTGTCCTGCTGGTGAGAGCCCAGCCCCGGCCGGCGCCCACCCACGGGGTCCCCTGGAGGCTGGCAGGGCAGGGGAGGCAGGGCCTGCTCCTGCACTTACCCAACCCCTGGTCTTACCCACACCTGCTCTGTGCCAGGTGTCAGGGATGCCACAGCAAGATCTGAGATCTGGGCCTTGTGGAGACAGTTCCAGTGCCTTCACCTGTTCTCAG
................................................................((.(((....(((......))).(((((((.............)))))))))).))..................................................................................................................................
................................................................65......................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM532889(GSM532889)
G576N. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532879(GSM532879)
G659N. (cervix)
GSM532887(GSM532887)
G761N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................CGGCGCCCACCCACGCGGG..................................................................................................................................................................1933.000.002.002.003.001.00-2.001.001.002.001.00-1.00-2.002.001.00---2.00------1.00--------1.00--1.00-1.00--1.00-1.00----1.001.001.00-----1.00-----
.....................................................................CGGCGCCCACCCACGCGG...................................................................................................................................................................1813.000.00------1.00----------1.001.00--1.00---1.00-----1.00-1.00-----1.00----1.00--------1.001.00-1.001.00------
....................................................................CCGGCGCCCACCCACGCGGG..................................................................................................................................................................205.000.00-1.00----------2.00---------1.00--------------1.00--------------------------
............................................................................................................................................................................................................ATCTGGGCCTTGTGGAGACAGTT.......................2313.003.00----3.00-----------------------------------------------------------
....................................................................CCGGCGCCCACCCACGCGG...................................................................................................................................................................192.000.00----------1.00------1.00----------------------------------------------
....................................................................CCGGCGCCCACCCACGCG....................................................................................................................................................................182.000.00--------------------------------1.00--------1.00----------------------
.....................................................................CGGCGCCCACCCACGCGGC..................................................................................................................................................................192.000.00---------1.001.00-----------------------------------------------------
......................................................................GGCGCCCACCCACGGGGG..................................................................................................................................................................1812.001.00-----1.00---1.00------------------------------------------------------
......................................................................GGCGCCCACCCACGGCGG..................................................................................................................................................................181.000.00---1.00------------------------------------------------------------
.............................................................GCCCCGGCCGGCGCCTAG...........................................................................................................................................................................181.000.00----------------------------1.00-----------------------------------
.....................................................................CGGCGCCCACCCACGCGCA..................................................................................................................................................................191.000.00------------------------------------------------1.00---------------
...........................................................................................................................................................................................................GATCTGGGCCTTGTGGAGA............................1911.001.00-------------------------------------------------------1.00--------
....................................................................CCGGCGCCCACCCACGCACA..................................................................................................................................................................201.000.00--1.00-------------------------------------------------------------
.....................................................................CGGCGCCCACCCACGCG....................................................................................................................................................................171.000.00-------------------------------------------------1.00--------------
..................................CACCGCTGTCCTGCTG........................................................................................................................................................................................................1611.001.00-----------------------1.00----------------------------------------
.....................................................................CGGCGCCCACCCACGCGAG..................................................................................................................................................................191.000.00---1.00------------------------------------------------------------
......................................................................GGCGCCCACCCACGGGGGG.................................................................................................................................................................1911.001.00------1.00---------------------------------------------------------
..............................ACAGCACCGCTGTCCTGCGGGG......................................................................................................................................................................................................221.000.00----------------1.00-----------------------------------------------
.....................................................................CGGCGCCCACCCACGTGG...................................................................................................................................................................181.000.00---------------1.00------------------------------------------------
.....................................................................CGGCGCCCACCCACGCTG...................................................................................................................................................................181.000.00-------1.00--------------------------------------------------------
.....................................................................CGGCGCCCACCCACGCGT...................................................................................................................................................................181.000.00-----------------------------1.00----------------------------------
......................................................................GGCGCCCACCCACGGGAG..................................................................................................................................................................181.000.00---1.00------------------------------------------------------------
.....................................................................CGGCGCCCACCCACGAGGG..................................................................................................................................................................191.000.00---------------------------1.00------------------------------------
.....................................................................CGGCGCCCACCCACGCGCG..................................................................................................................................................................191.000.00-----------------------------------------------1.00----------------
......................................................................GGCGCCCACCCACGGGG...................................................................................................................................................................1711.001.00-------1.00--------------------------------------------------------
..................................................................GGCCGGCGCCCACCCGAG......................................................................................................................................................................181.000.00------------------------------------------1.00---------------------
............................................................................................................................................................................................................ATCTGGGCCTTGTGGAGAC...........................1911.001.00------------------------------1.00---------------------------------
.....................................................................CGGCGCCCACCCACGCCGC..................................................................................................................................................................191.000.00------------------------------------1.00---------------------------
.....................................................................CGGCGCCCACCCACGAG....................................................................................................................................................................171.000.00-1.00--------------------------------------------------------------
...........................................................................................CTGGAGGCTGGCAGGGCAG............................................................................................................................................1930.330.33--------------------0.33-------------------------------------------
..........................................................CCAGCCCCGGCCGGCG................................................................................................................................................................................1670.140.14-------------------------------------------------------------0.14--
..............................................................CCCCGGCCGGCGCCCGC...........................................................................................................................................................................1790.110.11-------------------------------------------------------------0.11--
..............................................................CCCCGGCCGGCGCCC.............................................................................................................................................................................1590.110.11--------------------------------------------------------------0.11-
....................................................................................................GGCAGGGCAGGGGAGGC.....................................................................................................................................1790.110.11---------------------------------------------------------------0.11

Antisense strand
CCATCCTGGTCTACCTGCAGTCCATCTTCGACAGCACCGCTGTCCTGCTGGTGAGAGCCCAGCCCCGGCCGGCGCCCACCCACGGGGTCCCCTGGAGGCTGGCAGGGCAGGGGAGGCAGGGCCTGCTCCTGCACTTACCCAACCCCTGGTCTTACCCACACCTGCTCTGTGCCAGGTGTCAGGGATGCCACAGCAAGATCTGAGATCTGGGCCTTGTGGAGACAGTTCCAGTGCCTTCACCTGTTCTCAG
................................................................((.(((....(((......))).(((((((.............)))))))))).))..................................................................................................................................
................................................................65......................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040014(GSM532899)
G623N. (cervix)
TAX577589(Rovira)
total RNA. (breast)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577741(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR040018(GSM532903)
G701N. (cervix)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040012(GSM532897)
G648N. (cervix)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577743(Rovira)
total RNA. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
GSM532889(GSM532889)
G576N. (cervix)
SRR040030(GSM532915)
G013N. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532883(GSM532883)
G871N. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR191616(GSM715726)
103genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532879(GSM532879)
G659N. (cervix)
GSM532887(GSM532887)
G761N. (cervix)
TAX577453(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................CCCCGGCCGGCGCCCAGAG......................................................................................................................................................................... 1991.000.00-----------------------------------------------------------1.00----
....................................................................................................................CAGGGCCTGCTCCTGCATG................................................................................................................... 191.000.00------------------------1.00---------------------------------------
...................................................................................................................................................GGTCTTACCCACACCTCTG.................................................................................... 191.000.001.00---------------------------------------------------------------
................................................................CCGGCCGGCGCCCACCTTT....................................................................................................................................................................... 191.000.00--------------------1.00-------------------------------------------
................GCAGTCCATCTTCGACC......................................................................................................................................................................................................................... 171.000.00------------------1.00---------------------------------------------
................GCAGTCCATCTTCGAC.......................................................................................................................................................................................................................... 161.000.00----------------------------------1.00-----------------------------
.....................................................................................................................AGGGCCTGCTCCTGCACTTCAGA.............................................................................................................. 231.000.00----------------1.00-----------------------------------------------
................GCAGTCCATCTTCGACATG....................................................................................................................................................................................................................... 191.000.00--------1.00-------------------------------------------------------
.......................................................................................................AGGGCAGGGGAGGCAGACA................................................................................................................................ 191.000.00----------------------------------------------1.00-----------------
..............................................................................................................................................................................................................................CAGTTCCAGTGCCTTCACA......... 191.000.00-----------1.00----------------------------------------------------
............................................CTGCTGGTGAGAGCCATGA........................................................................................................................................................................................... 191.000.001.00---------------------------------------------------------------
....................................................................................................CCCTGCCTCCCCTGCCCTGCC................................................................................................................................. 2120.500.50------------------------------------------------------------0.50---