ID: uc004ccp.2_intron_14_0_chr9_135985073_r.5p
GENE: (3)
chr9:135985483-135985732-


(2)
B-CELL 		(2)
BREAST 		(25)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(11)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TATAGAGCCTTCACCACCACCCAACAGGTCCTGGACCTGCTGTTCAAAAGGTGAGCATGAGCCCTCCACTGCACAGGGTGCACAGGGGCCCTCGCCCCCACCCCCACCTGGCTGCGGGTCTTGGCAATGCTGATTCACCTCTCTGAGCCTCGCTTTGCTCATATGAAAGAGAAACTGGAGTGCTAAGAGGACCTCATGGGGTTGTCACCATGCCTGGGCGGGATGAGGCGTGGAAAGTGCTCCCTCAACG
......................................................................................................................((((((((.......((((..(((((((((........))))).......))))...)))).))))))))..............................................................
....................................................................................................................117....................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		TAX577740(Rovira)
total RNA. (breast)
..........................................................................................................................GGCAATGCTGATTCACCTCTCTGAGC......................................................................................................26141.0041.005.002.004.002.009.006.00-1.004.001.001.00----1.00-----1.00---1.00---------1.00--------1.001.00--
.........................................................................................................................TGGCAATGCTGATTCACCTCTCTGAGCC.....................................................................................................28128.0028.0015.009.00-----1.00--------------1.00------1.00---------1.00--------
.........................................................................................................................TGGCAATGCTGATTCACCTCTCTGAGC......................................................................................................27117.0017.00--5.004.00------1.00------1.00---------1.00---1.001.001.00-------1.001.00-----
..........................................................................................................................GGCAATGCTGATTCACCTCTCTGAGCC.....................................................................................................2716.006.00-------3.00---------------1.00----1.00---------1.00---------
.........................................................................................................................TGGCAATGCTGATTCACCTCTCTG.........................................................................................................2413.003.00---3.00--------------------------------------------
..........................................................................................................................GGCAATGCTGATTCACCTCTCTGAGCCTC...................................................................................................2912.002.00------------------------------1.00---1.00-------------
.........................................................................................................................TGGCAATGCTGATTCACCTCTCTGAGCCTC...................................................................................................3012.002.00------------------1.00------------------1.00----------
..........................................................................................................................GGCAATGCTGATTCACCTCTCT..........................................................................................................2212.002.00------2.00-----------------------------------------
..........................................................................................................................GGCAATGCTGATTCACCTCTC...........................................................................................................2112.002.00------2.00-----------------------------------------
.........................................................................................................................TGGCAATGCTGATTCACCTCTCTGAG.......................................................................................................2611.001.00------1.00-----------------------------------------
.........................................................................................................................TGGCAATGCTGATTCACCTCTCTGAGCCT....................................................................................................2911.001.00---------1.00--------------------------------------
..................ACCCAACAGGTCCTGGAC......................................................................................................................................................................................................................1811.001.00-------------1.00----------------------------------
............................TCCTGGACCTGCTGTT..............................................................................................................................................................................................................1611.001.00--------------------------1.00---------------------
.........................................................................................................................TGGCAATGCTGATTCACCTC.............................................................................................................2011.001.00--------------------1.00---------------------------
..........................GGTCCTGGACCTGCTGGGA.............................................................................................................................................................................................................191.000.00-------------------------------------------1.00----
..................................................................................................................................................................ATGAAAGAGAAACTGGAGTGCT..................................................................2211.001.00------------------------1.00-----------------------
..............................................................................................CCCCCACCCCCACCTGGCTGCGGGTCTTGGC.............................................................................................................................3111.001.00-------------------1.00----------------------------
.........................................................................................................................TGGCAATGCTGATTCACCTCTCT..........................................................................................................2311.001.00-----1.00------------------------------------------
................................GGACCTGCTGTTCAAAAGATA.....................................................................................................................................................................................................211.000.00----------------1.00-------------------------------
.........................................................................................................................................CCTCTCTGAGCCTCGCTT...............................................................................................1880.250.25----------------------------------------------0.120.12

Antisense strand
TATAGAGCCTTCACCACCACCCAACAGGTCCTGGACCTGCTGTTCAAAAGGTGAGCATGAGCCCTCCACTGCACAGGGTGCACAGGGGCCCTCGCCCCCACCCCCACCTGGCTGCGGGTCTTGGCAATGCTGATTCACCTCTCTGAGCCTCGCTTTGCTCATATGAAAGAGAAACTGGAGTGCTAAGAGGACCTCATGGGGTTGTCACCATGCCTGGGCGGGATGAGGCGTGGAAAGTGCTCCCTCAACG
......................................................................................................................((((((((.......((((..(((((((((........))))).......))))...)))).))))))))..............................................................
....................................................................................................................117....................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		TAX577740(Rovira)
total RNA. (breast)
.................................................................................................................................................................................................................ATGCCTGGGCGGGATC......................... 162.000.00-----------2.00------------------------------------
.....................................................................................................................................TTCACCTCTCTGAGCCTCGCTCTC............................................................................................. 241.000.00------------1.00-----------------------------------
..............................CTGGACCTGCTGTTCTGGG......................................................................................................................................................................................................... 191.000.00--------------1.00---------------------------------
......................................................................................................................................TCACCTCTCTGAGCCTCGC................................................................................................. 191.000.00------------1.00-----------------------------------
..TAGAGCCTTCACCACGAT...................................................................................................................................................................................................................................... 181.000.00------------------------------------1.00-----------