ID: uc004cca.2_intron_5_0_chr9_135778175_r.5p
GENE: TSC1(17)
chr9:135778838-135779087-


(1)
AGO2.ip 		(3)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(1)
HELA 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
TESTES

Sense strand
TCCGCAAGGTGATCAAAGCAGCAGCTCTGGAGGAACATAATGCTGCCATGGTGAGGACTGGGGAGGGGACAGGTGGAGCTTGCTTTTTGTTTTGTTTTGGGTCAGCATGATAGCTTATAAAGCACAGCAGCCGAGGAGGTCAGAGTTCCCAGTCCTTCCCACTCCTTTGGGCAGGTCGCTTGAGATTAAGACATGAATGGTGACACCTCGGAATTCCCTCATAATTCTCAGAAACCGTGGGGACAAGTGA
..................................................((((((((((((((...(((.(((...(((((((((.((..(((((.((......)).)))))..)).)))))).))).)))......)))....)))))))))))...)))........................................................................................
..................................................51..............................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM532890(GSM532890)
G576T. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)
..................................................GTGAGGACTGGGGAGGTGGA....................................................................................................................................................................................2090.000.0046.0021.0011.00-2.00-3.001.002.00-1.00--2.00-------------------------1.00-----------
..................................................GTGAGGACTGGGGAGGTGG.....................................................................................................................................................................................1930.000.0019.003.001.00-1.00--2.001.00--------2.00----------------1.00----------------
............................................................................................................................................CAGAGTTCCCAGTCCGACG...........................................................................................193.000.00---------2.00-1.00---------------------------------------
...............................................................................TTGCTTTTTGTTTTGTTTTTCCC....................................................................................................................................................233.000.00---3.00-----------------------------------------------
..................................................GTGAGGACTGGGGAGGTAA.....................................................................................................................................................................................193.000.003.00--------------------------------------------------
...............AAGCAGCAGCTCTGGAGGA........................................................................................................................................................................................................................1912.002.00------------------------------1.00----------1.00---------
..................................................GTGAGGACTGGGGAGCTGG.....................................................................................................................................................................................191.000.001.00--------------------------------------------------
...................AGCAGCTCTGGAGGAACATAATGCT..............................................................................................................................................................................................................2511.001.00-------------------------------------1.00-------------
....................................................................................TTTTGTTTTGTTTTGGGCG...................................................................................................................................................191.000.00---1.00-----------------------------------------------
..................................................GTGAGGACTGGGGAGTTGG.....................................................................................................................................................................................191.000.001.00--------------------------------------------------
....................GCAGCTCTGGAGGAACA.....................................................................................................................................................................................................................1711.001.00---------------------------1.00-----------------------
..................................................GTGAGGACTGGGGAGGTTG.....................................................................................................................................................................................191.000.00----------1.00----------------------------------------
.................GCAGCAGCTCTGGAGGAACATAATGC...............................................................................................................................................................................................................2611.001.00--------------------1.00------------------------------
.........TGATCAAAGCAGCAGCTCTGGAGGA........................................................................................................................................................................................................................2511.001.00--------------1.00------------------------------------
.........................TCTGGAGGAACATAATGCTGCCATG........................................................................................................................................................................................................2511.001.00-----------------------------------1.00---------------
.....................CAGCTCTGGAGGAACATAATGCTGA............................................................................................................................................................................................................251.000.00----------------1.00----------------------------------
.........TGATCAAAGCAGCAGCTCTGGAGG.........................................................................................................................................................................................................................2411.001.00--------------1.00------------------------------------
...........................................................................................................................................TCAGAGTTCCCAGTCCTACGA..........................................................................................211.000.00-------------------------------------------1.00-------
.....................................................................................................................................................................TTTGGGCAGGTCGCTCCGG..................................................................191.000.00-----1.00---------------------------------------------
.....................................................AGGACTGGGGAGGGGATG...................................................................................................................................................................................181.000.00-------------------------1.00-------------------------
..CGCAAGGTGATCAAAGCAGCAGCTCTGGAG..........................................................................................................................................................................................................................3011.001.00----1.00----------------------------------------------
........................CTCTGGAGGAACATAATGCTGCCAT.........................................................................................................................................................................................................2511.001.00--------------------------------------------1.00------
............................................................................AGCTTGCTTTTTGTTGGTT...........................................................................................................................................................191.000.00----------------------------1.00----------------------
...................................................................................TTTTTGTTTTGTTTTGGGTGGTT................................................................................................................................................231.000.00------------------1.00--------------------------------
..................................................................................................................................CCGAGGAGGTCAGAGTCTAG....................................................................................................201.000.00-----1.00---------------------------------------------
..................................................GTGAGGACTGGGGAGGTAG.....................................................................................................................................................................................191.000.00------1.00--------------------------------------------
...................AGCAGCTCTGGAGGAACATAAT.................................................................................................................................................................................................................2211.001.00-------------------1.00-------------------------------
................AGCAGCAGCTCTGGAGGAACATAA..................................................................................................................................................................................................................2411.001.00---------------1.00-----------------------------------
...........................................................................................................................................TCAGAGTTCCCAGTCCGAC............................................................................................191.000.00-----------1.00---------------------------------------
..CGCAAGGTGATCAAAGCAGCAGCTCTGGAGGA........................................................................................................................................................................................................................3211.001.00----1.00----------------------------------------------
...................................................................................TTTTTGTTTTGTTTTGGGGTTC.................................................................................................................................................221.000.00---1.00-----------------------------------------------
.........................TCTGGAGGAACATAATGCTGC............................................................................................................................................................................................................2111.001.00----------------------------------------1.00----------
...............AAGCAGCAGCTCTGGAGGAACA.....................................................................................................................................................................................................................2211.001.00----------------1.00----------------------------------
.................GCAGCAGCTCTGGAGGAACATAAT.................................................................................................................................................................................................................2411.001.00------------------------------------------1.00--------
.................................................................................GCTTTTTGTTTTGTTTTCTGC....................................................................................................................................................211.000.00---1.00-----------------------------------------------
..................................................GTGAGGACTGGGGAGGAGGA....................................................................................................................................................................................201.000.00-1.00-------------------------------------------------
...............................................................................TTGCTTTTTGTTTTGTTTTCATG....................................................................................................................................................231.000.00------------------1.00--------------------------------
.....................................................AGGACTGGGGAGGGGACAGGTGGAGCCTG........................................................................................................................................................................291.000.00--------------------------------1.00------------------
...................................................................................................................................CGAGGAGGTCAGAGTCTAG....................................................................................................191.000.00-----1.00---------------------------------------------
..................................................................................................................................................................................CTTGAGATTAAGACATGAATGGTGAC..............................................2611.001.00---------------------------------1.00-----------------
..............AAAGCAGCAGCTCTGGAGGAAC......................................................................................................................................................................................................................2211.001.00----------------------1.00----------------------------
................AGCAGCAGCTCTGGAGGAACA.....................................................................................................................................................................................................................2111.001.00-----------------------------1.00---------------------
..................................................GTGAGGACTGGGGAGGGGGAG...................................................................................................................................................................................2150.800.200.80--------------------------------------------------
.......................................................................................................................AAGCACAGCAGCCGAGG..................................................................................................................1720.500.50---------------------------------------------0.50-----
..................................................GTGAGGACTGGGGAGGGGGA....................................................................................................................................................................................2050.400.200.20-0.20------------------------------------------------
..................................................GTGAGGACTGGGGAGGGGGAA...................................................................................................................................................................................2150.200.200.20--------------------------------------------------
..................................................GTGAGGACTGGGGAGGGG......................................................................................................................................................................................1850.200.200.20--------------------------------------------------
..................................................GTGAGGACTGGGGAGGGGGAGA..................................................................................................................................................................................2250.200.20-----------------------------------------------0.20---
..................................................GTGAGGACTGGGGAGGGGGAGG..................................................................................................................................................................................2250.200.20--0.20------------------------------------------------
...........................................................GGGGAGGGGACAGGTGG..............................................................................................................................................................................1790.110.11--------------------------------------------------0.11

Antisense strand
TCCGCAAGGTGATCAAAGCAGCAGCTCTGGAGGAACATAATGCTGCCATGGTGAGGACTGGGGAGGGGACAGGTGGAGCTTGCTTTTTGTTTTGTTTTGGGTCAGCATGATAGCTTATAAAGCACAGCAGCCGAGGAGGTCAGAGTTCCCAGTCCTTCCCACTCCTTTGGGCAGGTCGCTTGAGATTAAGACATGAATGGTGACACCTCGGAATTCCCTCATAATTCTCAGAAACCGTGGGGACAAGTGA
..................................................((((((((((((((...(((.(((...(((((((((.((..(((((.((......)).)))))..)).)))))).))).)))......)))....)))))))))))...)))........................................................................................
..................................................51..............................................................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM532890(GSM532890)
G576T. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)
......................................................................................................................................................................................................................GTTTCTGAGAATTATGAGGGA............... 2112.002.00------------2.00--------------------------------------
............................................................................................................................................GAAGGACTGGGAACTCTG............................................................................................ 1812.002.00-----------------------1.00--1.00------------------------
...............................................................................................................................................................................................................TTTCTGAGAATTATGAGGGAATTCCGA................ 2711.001.00---------------1.00-----------------------------------
............................................................................................................................................AAGGACTGGGAACTCTG............................................................................................. 1711.001.00--------------------------------------1.00------------
................................................................................................................GCTTATAAAGCACAGATCT....................................................................................................................... 191.000.00-----1.00---------------------------------------------
..............................................................................................................................................GAGTTCCCAGTCCTTAG........................................................................................... 171.000.00---------------------1.00-----------------------------
......................................................................................................................................GAAGGACTGGGAACTCTGACCTCC............................................................................................ 2411.001.00-------------------------------1.00-------------------
.............................................................................................................................AGCAGCCGAGGAGGTTGC........................................................................................................... 181.000.00------------------------------------1.00--------------
..............................................................GAGGGGACAGGTGGAGCTTCAG...................................................................................................................................................................... 221.000.00------------------------1.00--------------------------
.........................................................................................................................................ACTGGGAACTCTGACC................................................................................................. 1660.500.50-------------------0.17----------------------------0.170.17-
......................................................................................................................................CTGGGAACTCTGACCTCC.................................................................................................. 1820.500.50----------------------------------------------0.50----