ID: uc004cba.2_intron_1_0_chr9_134401365_r.5p
GENE: (4)
chr9:134404315-134404564-


(1)
AGO1.ip 		(2)
AGO2.ip 		(2)
B-CELL 		(4)
BRAIN 		(5)
BREAST 		(15)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(4)
HELA 		(4)
LIVER 		(2)
OTHER 		(11)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTGCGCCTCTTCGTGGACACCGACTCCGACGTCAGGCTGTCTCGAAGAGGTAAGGCGGCCGCGGGCCTCCGTGCCTGCCTGGCCGAGGCTGGCGGCAGGTCCTGAGGTCTGAAGCACGCCTGCCCCTTGCCGCTGCAGTTCTCCGGGACGTGCGCCGAGGGAGGGACCTGGAGCAGATTCTGACGCAGTACACCACCTTCGTGAAGCCGGCCTTCGAGGAGTTCTGCCTGCCGGTACCTGTGCTCGCTG
..................................................................................................(((.(((..(((.(((.....(((..((((((.(((....((((....))))..))).)))))).)))..(((...))).))).))).)))...))).......................................................
.................................................................................................98....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
......................................................................................................CTGAGGTCTGAAGCACGCCTGCC.............................................................................................................................2319.009.00--6.00---------------------------1.00------------------1.00--1.00-------
...................................................................................................................................................................................TCTGACGCAGTACACCA......................................................1716.006.005.00------------------------------------------------------1.00----
....................................................................................................TCCTGAGGTCTGAAGCACGCCT................................................................................................................................2214.004.00----3.00-----------1.00-------------------------------------------
................................................................................................CAGGTCCTGAGGTCTGAAGC......................................................................................................................................2013.003.00---------3.00--------------------------------------------------
.........................................................................................................................................................................TGGAGCAGATTCTGAACA...............................................................183.000.00-------2.00--1.00-------------------------------------------------
.......................................................GCGGCCGCGGGCCTCCGTGCCTGCCTGGCCGAGGCTGGCGGCAGGTCCTGAGGTCTG..........................................................................................................................................5712.002.00--------------2.00---------------------------------------------
..............................................................................................................................................................AGGGAGGGACCTGGAGCAGATT......................................................................2212.002.00---2.00--------------------------------------------------------
.........................................................................................................................................................................TGGAGCAGATTCTGACGCAGTACACCA......................................................2712.002.00-2.00----------------------------------------------------------
...............................................................................................................................................................................AGATTCTGACGCAGTACACCA......................................................2112.002.00-1.00----------------------------------------------------1.00-----
.......................ACTCCGACGTCAGGCTGTCTCGAAGAG........................................................................................................................................................................................................2712.002.00-----------2.00------------------------------------------------
.........................................................................................................................................................................TGGAGCAGATTCTGAAC................................................................172.000.00-----1.00--------------------1.00---------------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGCA.................................................................................................................................211.000.00--------------------1.00---------------------------------------
.............................................................................................................................................................GAGGGAGGGACCTGGAGCAGATT......................................................................2311.001.00---------------------------------1.00--------------------------
......................GACTCCGACGTCAGGCTGTC................................................................................................................................................................................................................2011.001.00-------1.00----------------------------------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGCCTGA..............................................................................................................................2411.001.00----1.00-------------------------------------------------------
.................................CAGGCTGTCTCGAAGAGT.......................................................................................................................................................................................................1811.001.00------------1.00-----------------------------------------------
...........................................................................................GGCGGCAGGTCCTGAGCGA............................................................................................................................................191.000.00-------------------------1.00----------------------------------
.....................................................................................................................................................................GACCTGGAGCAGATTCTGACGCAGTAA..........................................................271.000.00--------------------------------------------------1.00---------
.........................................................................................................................................................................TGGAGCAGATTCTGACGCAGTAAAC........................................................251.000.00------------------------------------------------1.00-----------
....................................................................................................TCCTGAGGTCTGAAGCACGCCAT...............................................................................................................................231.000.00------------------1.00-----------------------------------------
.................................CAGGCTGTCTCGAAGAGGTAAGGCGG...............................................................................................................................................................................................2611.001.00------------------------------------------1.00-----------------
...GCGCCTCTTCGTGGACACCGA..................................................................................................................................................................................................................................2111.001.00---1.00--------------------------------------------------------
..................................................................................GCCGAGGCTGGCGGCAGGTCCTG.................................................................................................................................................2311.001.00----------------------------------------------1.00-------------
..............................................................................................................................................................................................................GCCGGCCTTCGAGGATC...........................171.000.00---------------------------------------------------------1.00--
....................................................................................................TCCTGAGGTCTGAAGCACGCT.................................................................................................................................211.000.00-----1.00------------------------------------------------------
..................................................................................................................................................................................TTCTGACGCAGTACACCACCT...................................................2111.001.00--------1.00---------------------------------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGCCA................................................................................................................................221.000.00----------------------------------------1.00-------------------
....................................................................................................TCCTGAGGTCTGAAGCGCCT..................................................................................................................................201.000.00-------------------------------------------1.00----------------
.......................................................................................................................................................................................................................CGAGGAGTTCTGCCTGCCGATT.............221.000.00-----1.00------------------------------------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGCCTGAA.............................................................................................................................2511.001.00---------------------------1.00--------------------------------
............................................................................................................................................................................................................................AGTTCTGCCTGCCGGTACCTGTGCCCGC..281.000.00--------1.00---------------------------------------------------
....................................................................................................................................................................................................CCTTCGTGAAGCCGG.......................................1511.001.00---------------------1.00--------------------------------------
...........................................................................................................................................................CCGAGGGAGGGACCTGGAGCAGAT.......................................................................2411.001.00----------------1.00-------------------------------------------
..........................................................................................................................................................................GGAGCAGATTCTGACGCAGTACACCA......................................................2611.001.00-1.00----------------------------------------------------------
...........TCGTGGACACCGACTCCGACGTCAGGC....................................................................................................................................................................................................................2711.001.001.00-----------------------------------------------------------
....................................................................................................TCCTGAGGTCTGAAGTCG....................................................................................................................................181.000.00---------------1.00--------------------------------------------
...............GGACACCGACTCCGACGTCAGGCTGTC................................................................................................................................................................................................................2711.001.00-----------------------------------------------------1.00------
..............TGGACACCGACTCCGACGTCAGGC....................................................................................................................................................................................................................2411.001.001.00-----------------------------------------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGA..................................................................................................................................201.000.00-------------1.00----------------------------------------------
.................................................................................................................................................................................ATTCTGACGCAGTACACCA......................................................1911.001.00-1.00----------------------------------------------------------
..................................AGGCTGTCTCGAAGAGTT......................................................................................................................................................................................................181.000.00---1.00--------------------------------------------------------
............................................................................................................................................................................AGCAGATTCTGACGCAGTACACCA......................................................2411.001.00-------------------1.00----------------------------------------
.........CTTCGTGGACACCGACTCCGACGTC........................................................................................................................................................................................................................2511.001.00----------1.00-------------------------------------------------
..................................................................................GCCGAGGCTGGCGGCAGGTCC...................................................................................................................................................2111.001.00-----------------------1.00------------------------------------
..................................................................................GCCGAGGCTGGCGGCAGGTCCTAA................................................................................................................................................241.000.00---------------------------------------------------1.00--------
................................................................................................................................................................................................................................CTGCCTGCCGGTACCTGTGCTCGCCGC271.000.00--------1.00---------------------------------------------------
.............................................................................................................................................................................GCAGATTCTGACGCAGTACACCACCTTCG................................................2911.001.00------------1.00-----------------------------------------------
..................................................................................................................................................................................TTCTGACGCAGTACACCA......................................................1811.001.00-----1.00------------------------------------------------------
.................................................GGTAAGGCGGCCGCGTGG.......................................................................................................................................................................................181.000.00-----------------------------1.00------------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGAA.................................................................................................................................211.000.00-----------------1.00------------------------------------------
...........................CGACGTCAGGCTGTCCA..............................................................................................................................................................................................................171.000.00-------------------------------1.00----------------------------
..................................................................................................................................................................AGGGACCTGGAGCAGATTCTGACGCAGTACAC........................................................3211.001.00-------------------------------------1.00----------------------
....................................................................................................TCCTGAGGTCTGAAGCCGC...................................................................................................................................191.000.00-1.00----------------------------------------------------------
..............................................................................................................................................................AGGGAGGGACCTGGAGCAGA........................................................................2011.001.00---1.00--------------------------------------------------------
.......................ACTCCGACGTCAGGCGACC................................................................................................................................................................................................................191.000.00-----------------------------------1.00------------------------
.............................................................................................CGGCAGGTCCTGAGGTCTGAAGCAC....................................................................................................................................2511.001.00-------------1.00----------------------------------------------
....................................................................................CGAGGCTGGCGGCAGGTCCTGAGGT.............................................................................................................................................2511.001.00----------------------------------1.00-------------------------
....................................................................................................TCCTGAGGTCTGAAGCACGCCTG...............................................................................................................................2311.001.00----------------------------1.00-------------------------------
.............................................................GCGGGCCTCCGTGCCATC...........................................................................................................................................................................181.000.00----------------------1.00-------------------------------------
.........................................................................................................................................................................................................................AGGAGTTCTGCCTGCCG................1711.001.00--------------------------------------------1.00---------------
.............................................................................................................................................CTCCGGGACGTGCGCCGA...........................................................................................1811.001.00---------------------------------------------1.00--------------
.....................................................................................................................CGCCTGCCCCTTGCCGCTGC.................................................................................................................2011.001.00------------------------1.00-----------------------------------
.................................CAGGCTGTCTCGAAGAG........................................................................................................................................................................................................1711.001.00------------------------------------1.00-----------------------
....................................................................................................TCCTGAGGTCTGAAGCACGCCTGC..............................................................................................................................2411.001.00-----------------------------------------1.00------------------
........................................................................................................................................................................................................................GAGGAGTTCTGCCTGCC.................1720.500.50----------------------------------------------------------0.50-
..................................................................................................................................................................AGGGACCTGGAGCAGAT.......................................................................1730.330.33-----------------------------------------------------------0.33

Antisense strand
CCTGCGCCTCTTCGTGGACACCGACTCCGACGTCAGGCTGTCTCGAAGAGGTAAGGCGGCCGCGGGCCTCCGTGCCTGCCTGGCCGAGGCTGGCGGCAGGTCCTGAGGTCTGAAGCACGCCTGCCCCTTGCCGCTGCAGTTCTCCGGGACGTGCGCCGAGGGAGGGACCTGGAGCAGATTCTGACGCAGTACACCACCTTCGTGAAGCCGGCCTTCGAGGAGTTCTGCCTGCCGGTACCTGTGCTCGCTG
..................................................................................................(((.(((..(((.(((.....(((..((((((.(((....((((....))))..))).)))))).)))..(((...))).))).))).)))...))).......................................................
.................................................................................................98....................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343337TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
........................................................................................................................................................CAGGTCCCTCCCTCGGCGC............................................................................... 1911.001.00--------------------------------------1.00---------------------
...........................................................................................................................................................................................................GAAGCCGGCCTTCGATTCG............................ 191.000.00------1.00-----------------------------------------------------
...........................................................................................................................................................................................................GAAGCCGGCCTTCGATTTT............................ 191.000.00------1.00-----------------------------------------------------
.................................................................................................................................................GGGACGTGCGCCGAGAGG....................................................................................... 181.000.00---------------1.00--------------------------------------------
..............................................................................................................................................................................................ACACCACCTTCGTGATCCC......................................... 191.000.00--------------------------------1.00---------------------------
...........................................................................................................................................................................................................GAAGCCGGCCTTCGACGT............................. 181.000.00--------------------------------------------------------1.00---
........................................................................................................................................................GCGCCGAGGGAGGGAGAC................................................................................ 181.000.00-----------------------------------------------1.00------------
.............................................................................................................................................................................................................................GAGCACAGGTACCGGCAGGCAGAAC.... 2511.001.00---------------------------------------1.00--------------------
...........................................................................................................................................................................................................GAAGCCGGCCTTCGATGTG............................ 191.000.00------1.00-----------------------------------------------------