ID: uc004cao.3_intron_6_0_chr9_134357196_f.3p
GENE: (7)
chr9:134357561-134357810+


(1)
AGO2.ip 		(4)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(7)
CELL-LINE 		(1)
HEART 		(4)
HELA 		(6)
LIVER 		(1)
OTHER 		(14)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
CGAGCTCTATCGGGGTTGGTGTGTTTGGCCACACGTAAGTTGTCAGGCATCCTCAGCAGGGCAGGATCAAGATCAGGACCAGACTTGGCAAGGGACAGGCAGCTGGGGTAGAAAAGTCTCTGTGCCACATGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGCAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCCGAGTC
.....................................................................................(((((((((((.....((....))......)))))).))))).........(((..((((.(((......))).))))..)))..................................................................................
.....................................................................................86................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR189786TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
.................................................................................................................................TGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAG.....................................................6819.009.00-9.00----------------------------------------------
..............................................................................................................................ACATGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGC.........................................................6718.008.008.00-----------------------------------------------
.................................................................................................................................TGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGC....................................................6917.007.007.00-----------------------------------------------
..............................................................................................................................ACATGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGCAG..................................................7417.007.00-7.00----------------------------------------------
........................................................................................................................................TTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCAC.......................................................5916.006.006.00-----------------------------------------------
...................................................................................................................................CAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGCAG..................................................6915.005.005.00-----------------------------------------------
...................................................................................................................................CAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCA........................................................6314.004.004.00-----------------------------------------------
..........................................................................................................................................................................................................................GGAGATAGTGGCGTTGACTT............2014.004.00--3.00--1.00------------------------------------------
................................................................................................................................................TGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGCA...................................................5514.004.004.00-----------------------------------------------
............................................................................................................................................................................................................................AGATAGTGGCGTTGACTTG...........1913.003.00--1.00-------1.00-----------------1.00-------------------
........................................................................................................................................................................................................................AGGGAGATAGTGGCGTTGACTT............2213.003.00-------------1.00--------------------------1.001.00------
...........................................................................................................................................................................................................................GAGATAGTGGCGTTGACTTGAGTGCCGA...2813.003.00----3.00-------------------------------------------
............................................................................................................................CCACATGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGCAG..................................................7612.002.002.00-----------------------------------------------
............................................................................................................................................................................................................................AGATAGTGGCGTTGACTT............1812.002.00--2.00---------------------------------------------
......................................................................................................................................................................................................................CCAGGGAGATAGTGGCGTTGACTC............242.000.00---2.00--------------------------------------------
........................................................................................................................................................................................................................AGGGAGATAGTGGCGTTGACTTGAG.........2512.002.00------2.00-----------------------------------------
.................................................................................................................................................GGATAATCGAGTTGGGAGT......................................................................................1911.001.00---------------------------------1.00--------------
.............................................................................................................................................................................................................................GATAGTGGCGTTGACTTG...........1811.001.00--1.00---------------------------------------------
..............................................................................................................................................................................................................AAGAGCAGCCAGGGAGATAGTGGCGTTGACTTG...........3311.001.00------------------------------------1.00-----------
..........................................................................................AGGGACAGGCAGCTGGTTGG............................................................................................................................................201.000.00---------------1.00--------------------------------
...........GGGGTTGGTGTGTTTGGCC............................................................................................................................................................................................................................1911.001.00------------------1.00-----------------------------
.......................................................................................................................................................TCGAGTTGGGAGTTTGAG.................................................................................1811.001.00--------------------------------------1.00---------
.....................................................................................TGGCAAGGGACAGGCAGCTGGGGTAGAAAAGT.....................................................................................................................................3211.001.00-----------1.00------------------------------------
.........................................................................................................................................................................................................GTTTTAAGAGCAGCCAGGGAGATAGTGG.....................2811.001.00---------1.00--------------------------------------
........................................................................TCAGGACCAGACTTGGCAAGGG............................................................................................................................................................2211.001.00--------------------------1.00---------------------
.......TATCGGGGTTGGTGTGTTTGGCC............................................................................................................................................................................................................................2311.001.00---------------------1.00--------------------------
......................................................................................................CTGGGGTAGAAAAGTCTCTGTGC.............................................................................................................................2311.001.00-------------------------------------1.00----------
......................................................AGCAGGGCAGGATCAAGA..................................................................................................................................................................................1811.001.00--------1.00---------------------------------------
.........TCGGGGTTGGTGTGTTTGGCCACAC........................................................................................................................................................................................................................2511.001.00---------1.00--------------------------------------
........................................................................................................................................................................................................................AGGGAGATAGTGGCGTTGACTTG...........2311.001.00--------1.00---------------------------------------
...............................................................................................................................................................................................................................TAGTGGCGTTGACTTGAGTGT......211.000.00------------------------1.00-----------------------
.................................................................................................................................................................................................................................GTGGCGTTGACTTGAGTG.......1811.001.00-------1.00----------------------------------------
.....................................................................................................................................................................................................................GCCAGGGAGATAGTGGCGTTGACTTG...........2611.001.00-----------------------1.00------------------------
....................................................................AAGATCAGGACCAGACTTGGC.................................................................................................................................................................2111.001.00------------1.00-----------------------------------
......CTATCGGGGTTGGTGTGGT.................................................................................................................................................................................................................................191.000.00-----------------1.00------------------------------
........................................................................................................................................................................................................................AGGGAGATAGTGGCGTTGACTTGAGTG.......2711.001.00--------------------------------1.00---------------
.............................................................................................................................................................................TAACCCATTTTGTGCTCTGCACAGC....................................................2511.001.00-----------------------------------1.00------------
...............................................................................................................................................................................................................................TAGTGGCGTTGACTTGAG.........1811.001.00-----------1.00------------------------------------
........................................................................TCAGGACCAGACTTGGCAAGGGACAG........................................................................................................................................................2611.001.00-------------1.00----------------------------------
.........................................................AGGGCAGGATCAAGATCAGGACC..........................................................................................................................................................................2311.001.00----------------------------------1.00-------------
................................................................GATCAAGATCAGGACCAGACTTGGCAAGGG............................................................................................................................................................3011.001.00------------1.00-----------------------------------
...................................................................................................................................................................................................................CAGCCAGGGAGATAGTGGCGTTGAC..............2511.001.00-------------------------------1.00----------------
.....................................AGTTGTCAGGCATCCTCAGCAGGGCAGGACC......................................................................................................................................................................................311.000.00---1.00--------------------------------------------
......................................................................................................................................TTTTACTCTCTGGATAACC.................................................................................................191.000.00---1.00--------------------------------------------
...................................................................................................................................................................................................................CAGCCAGGGAGATAGTGGCGTTGACTTGAGC........311.000.00---1.00--------------------------------------------
............................................................................................................................................................................................................TTAAGAGCAGCCAGGGAGAC..........................201.000.00---1.00--------------------------------------------
.........................................................................................................................................................................................................................GGGAGATAGTGGCGTTGACT.............2011.001.00--1.00---------------------------------------------
.....................................................................................................................................GTTTTACTCTCTGGATAAA..................................................................................................191.000.00----------------------1.00-------------------------
.....TCTATCGGGGTTGGTGTGTTT................................................................................................................................................................................................................................2111.001.00-------------------------1.00----------------------
.........................................................................................................................................................................................................................GGGAGATAGTGGCGTTGACTT............2111.001.00-----1.00------------------------------------------
.......................................................................................................................................................................................................GGGTTTTAAGAGCAGCCAGGGAGATA.........................2611.001.00--------------1.00---------------------------------
.........TCGGGGTTGGTGTGTTTATTT............................................................................................................................................................................................................................211.000.00-------------------------------------------1.00----
....................GTGTTTGGCCACACGTAAGTTGT...............................................................................................................................................................................................................2311.001.00---------------------------------------1.00--------
........................................................................................................................................................................................................................AGGGAGATAGTGGCGTTGACT.............2111.001.00--------------------1.00---------------------------
..........................................................................................................................................................................................................................GGAGATAGTGGCGTTGACTTG...........2111.001.00-------1.00----------------------------------------
............................................................................................................................................................................................................................AGATAGTGGCGTTGACTTGAG.........2111.001.00------1.00-----------------------------------------
.............................................................................................................................................................................................................TAAGAGCAGCCAGGGAGATAGTGGC....................2511.001.00----------1.00-------------------------------------
..............................................................................................................................................................................................................................ATAGTGGCGTTGACTTTTT.........191.000.00------------------------------------------1.00-----
............................................................................................................................................................................................................................AGATAGTGGCGTTGACTTGAGTG.......2311.001.00-----1.00------------------------------------------
...........................................................................................................GTAGAAAAGTCTCTGTGCCACATGC......................................................................................................................2511.001.00-----------------------------1.00------------------
.........................................................................................................................................................................................................................GGGAGATAGTGGCGTTGA...............1820.500.50---------------------------------------------0.50--
.................................................................ATCAAGATCAGGACCAG........................................................................................................................................................................1720.500.50----------------------------------------------0.50-
.................................................................................................................................................GGATAATCGAGTTGG..........................................................................................1520.500.50--------------------------------------------0.50---
.............................................................................................................................................................................................................TAAGAGCAGCCAGGGAGA...........................1830.330.33-----------------------------------------------0.33

Antisense strand
CGAGCTCTATCGGGGTTGGTGTGTTTGGCCACACGTAAGTTGTCAGGCATCCTCAGCAGGGCAGGATCAAGATCAGGACCAGACTTGGCAAGGGACAGGCAGCTGGGGTAGAAAAGTCTCTGTGCCACATGCAGTTTTACTCTCTGGATAATCGAGTTGGGAGTTTGAGGCTATAACCCATTTTGTGCTCTGCACAGCAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCCGAGTC
.....................................................................................(((((((((((.....((....))......)))))).))))).........(((..((((.(((......))).))))..)))..................................................................................
.....................................................................................86................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029124(GSM416753)
HeLa. (hela)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR189786TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
.................................................................................................................................................................................................................AGCAGCCAGGGAGATAGTTTAG................... 221.000.00----------------1.00-------------------------------
............................................AGGCATCCTCAGCAGCTGA........................................................................................................................................................................................... 191.000.00-------------------1.00----------------------------
..........................................................................................................................TGCCACATGCAGTTTTTTGG............................................................................................................ 201.000.00---1.00--------------------------------------------
...........................................................GGCAGGATCAAGATCAGT............................................................................................................................................................................. 181.000.00------------------------------1.00-----------------