ID: uc004caj.2_intron_1_0_chr9_134138987_r.3p
GENE: (2)
chr9:134138937-134139186-


(9)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(1)
LIVER 		(4)
OTHER 		(5)
SKIN 		(1)
TESTES

Sense strand
GAGCTTTTCAATGAGATGAACAGGAAAATTAGCAAAATCATGTTCCTAATCATTCCTCCTGCGGCGGCCCCAATTTTGCTAACTGTTAACATTATATGATGCATAAGTAGGGGAATGCATTTTTAAAATTATGGTAAAGCCTATGTAACATTTTATAAAATTGACCATTTTATTTTATTATTAATTTTTTTTTTTTTAAGACAGGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAATGGTATGATCTCGG
..................................................((((((.(((((....((..((((..((.((.....)).))..)).))..))....)))))))))))......((((((.(((((......((((........))))......)))))...)))))).........................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784GSM532876(GSM532876)
G547T. (cervix)		SRR189782SRR390723(GSM850202)
total small RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAG..................................................261137.00137.0063.0039.0015.0018.00--1.00-1.00-------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAAG...................................................25119.000.0062.0036.0011.0010.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTAAG....................................................2490.000.0044.0027.007.0012.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTAAG...................................................2369.000.0025.0018.0018.008.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAAG..................................................24156.0056.0023.0016.0012.004.00----1.00-------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTAAG.....................................................2333.000.0020.008.002.003.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTAAG....................................................2313.000.001.004.005.003.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTAAG..................................................25112.0012.002.006.003.001.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTAAG...................................................2410.000.004.00-5.001.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTCAAG.................................................2710.000.00--5.001.004.00-----------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTAA.....................................................237.000.006.00--1.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTAA....................................................236.000.002.002.001.001.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTTAAT.................................................276.000.003.002.001.00-------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTAAG.....................................................226.000.00-1.002.003.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTTAAT.................................................255.000.002.002.001.00-------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTTTAA.................................................255.000.001.002.001.001.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAAGTAG...............................................2715.0056.003.002.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTAA....................................................225.000.001.003.001.00-------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTTTAA.................................................274.000.002.002.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTAAT...................................................234.000.002.001.001.00-------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTAA.....................................................224.000.001.00-3.00-------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTCAAG..................................................264.000.00--1.002.001.00-----------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAA...................................................2523.503.501.001.000.50--------1.00----------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAA....................................................243.000.001.001.00--1.00-----------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTAA...................................................2423.003.000.502.00-0.50------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTAAAG...................................................233.000.001.001.00-1.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTTAAT.................................................263.000.001.001.001.00-------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTCAAG..................................................253.000.00--2.001.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAAAG..................................................262.000.001.001.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTATG.....................................................232.000.00-2.00--------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTCAAG.................................................262.000.00--1.001.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTCAAG.................................................252.000.00--2.00-------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTA.....................................................232.000.001.001.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTCAAG..................................................242.000.00--2.00-------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTTTAT.................................................252.000.001.001.00--------------------
.........................................................................................................................................................................................................CAGGGTCTGGCTCTGTCACTCTG..........................232.000.00---------2.00------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAGTAG...............................................2912.00137.00-1.00--1.00-----------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTAAT...................................................242.000.00-2.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAAT...................................................252.000.002.00---------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTAAT....................................................242.000.001.001.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTTAAA.................................................272.000.001.001.00--------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTTTAA.................................................262.000.00-1.001.00-------------------
......................................................................................................................................................................................................AGACAGGGTCTGGCTCTCCCC...............................212.000.00-----2.00----------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAGCAG...............................................2912.00137.00----2.00-----------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAG....................................................242.000.00-2.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTTAAA.................................................252.000.001.001.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTCAAG...................................................252.000.00--2.00-------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTAAT....................................................222.000.002.00---------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAA...................................................2322.002.00-1.001.00-------------------
.................................................................................................................................................................................TTATTAATTTTTTTTTTTTTAAG..................................................2331.671.671.000.67--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAAG.................................................2721.503.50--1.00-0.50-----------------
..........................................................................................................................................................................................................AGGGTCTGGCTCTGTCACCCAGGCGAAG....................281.000.00-----1.00----------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTTATG.................................................271.000.00-1.00--------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTCAAA..................................................251.000.00--1.00-------------------
......................................................................................................................................................................................................AGACAGGGTCTGGCTCTCCT................................201.000.00------1.00---------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAAAT..................................................261.000.001.00---------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTCAAG......................................................211.000.00-1.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTTACG.................................................271.000.00--1.00-------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTAAT....................................................231.000.00-1.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTAAGT....................................................221.000.001.00---------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAGAAGAG.............................................311.000.00----1.00-----------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTATT..................................................261.000.00-1.00--------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTTAAA.................................................261.000.00--1.00-------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTATG....................................................221.000.001.00---------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTTATG.................................................261.000.001.00---------------------
..........................................................................................................................................................................TATTTTATTATTAATTTCTAT...........................................................211.000.00----1.00-----------------
.............................................................................................................................................................................TTTATTATTAATTTTTTTTTTTTAG....................................................251.000.00--1.00-------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTTTAC.................................................271.000.00----1.00-----------------
......................................................................................................................................................................................................AGACAGGGTCTGGCTCTGTCACCCAGGCGGAG....................321.000.00-----1.00----------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTCAG.....................................................221.000.00---1.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTCAAT.................................................271.000.00--1.00-------------------
.........................................................................................................................................................................................................................................CAATGGTATGATCTCGGATA201.000.00----------------1.00-----
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTATT...................................................231.000.00-1.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAAGTAGA..............................................2811.0056.00------1.00---------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAAGA..................................................261.000.001.00---------------------
.......................................................................................................................................................................TTTTATTTTATTATTCTAG................................................................191.000.00---1.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAGGAAG..............................................3011.00137.00----1.00-----------------
........................................................................................................................................................................................................ACAGGGTCTGGCTCTGTCACCCAGGCTGGCGC..................321.000.00------1.00---------------
...................................................................................................................................................................................ATTAATTTTTTTTTTTCAAG...................................................201.000.00--1.00-------------------
..........................................................................................................................................................................................................AGGGTCTGGCTCTGTCACCCAGGCTGGAACGC................321.000.00-----1.00----------------
.....................................................................................................................................................................................................................................AGTGCAATGGTATGAAAA...181.000.00-------------1.00--------
.............................................................................................................................................................................TTTATTATTAATTTTTTTTTTTCTAG...................................................261.000.00---1.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTCAAT.....................................................221.000.00---1.00------------------
.............................................................................................................................................................................TTTATTATTAATTTTTTTTTCTAG.....................................................241.000.00---1.00------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTCAAA..................................................261.000.00--1.00-------------------
...................................................................................................................................................................................ATTAATTTTTTTTTTTTTAAATG................................................231.000.00-1.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTCTAA..................................................261.000.00---1.00------------------
......................................................CCTCCTGCGGCGGCCTG...................................................................................................................................................................................171.000.00----------1.00-----------
.................................................................................................................................................................................................TTTTAAGACAGGGTCCGG.......................................181.000.00-----1.00----------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTCTG..................................................241.000.00---1.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTCAG...................................................231.000.00--1.00-------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTAAA...................................................241.000.00-1.00--------------------
........................................................................................................................................................................................TTTTTTTTTTTTTAAGACAGGGTCCCGC......................................281.000.00------1.00---------------
..........................................................................................................................................................................................................................ACCCAGGCTGGAGTGCAATGGA..........221.000.00--------------1.00-------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAGCCG...............................................2911.00137.00---1.00------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTAAAG.................................................2621.003.00--0.500.50------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTAAA...................................................231.000.00-1.00--------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTAAGG..................................................261.000.00-1.00--------------------
..............................................................................................................................................................................................................................AGGCTGGAGTGCAATGGTAGGA......221.000.00-------1.00--------------
.............................................................................................................................................................................TTTATTATTAATTTTTTTACC........................................................211.000.00----1.00-----------------
......................................................................................................................................................................................................AGACAGGGTCTGGCTCTGTCACCCAGGCCGC.....................311.000.00------1.00---------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTTTAT.................................................261.000.00---1.00------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTCAAG...................................................231.000.00--1.00-------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTAAA....................................................241.000.001.00---------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTCAG..................................................241.000.00--1.00-------------------
........................................................................................................................................................................................................ACAGGGTCTGGCTCTGTCACCCAGGCCAC.....................291.000.00------1.00---------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTATG......................................................221.000.00-1.00--------------------
........................................................................................................................................................................................................ACAGGGTCTGGCTCTCCT................................181.000.00-----1.00----------------
.................................................................................................................................................................................TTATTAATTTTTTTTTTTTCT....................................................211.000.001.00---------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTCAA..................................................251.000.00--1.00-------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAGTAG................................................261.000.00------1.00---------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTAAGAAGAG.............................................301.000.00-1.00--------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTTACG.................................................251.000.00-1.00--------------------
.....................................................................................................................................................................CATTTTATTTTATTATTCG..................................................................191.000.00--1.00-------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTAAAG..................................................241.000.001.00---------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAAATAG...............................................2720.502.00-0.50--------------------
..........................................................................................................................................................ATAAAATTGACCATTTTATT............................................................................2020.500.50----0.50-----------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAAAAG................................................2620.502.000.50---------------------
..............................................................................................................................................................................TTATTATTAATTTTTTTTTTTTTAAAT.................................................2720.503.50---0.50------------------
................................................................................................................................................................................ATTATTAATTTTTTTTTTTTTAAAG.................................................2520.502.000.50---------------------
..................................................................................................................................................................................TATTAATTTTTTTTTTTTTAAG..................................................2240.250.25-0.25--------------------
...............................................................................................................................................................................TATTATTAATTTTTTTTTTTTTA....................................................2340.250.25------------------0.25---
.................................................................................................................................................................................TTATTAATTTTTTTTTTTTTAA...................................................2270.140.14--0.14-------------------

Antisense strand
GAGCTTTTCAATGAGATGAACAGGAAAATTAGCAAAATCATGTTCCTAATCATTCCTCCTGCGGCGGCCCCAATTTTGCTAACTGTTAACATTATATGATGCATAAGTAGGGGAATGCATTTTTAAAATTATGGTAAAGCCTATGTAACATTTTATAAAATTGACCATTTTATTTTATTATTAATTTTTTTTTTTTTAAGACAGGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAATGGTATGATCTCGG
..................................................((((((.(((((....((..((((..((.((.....)).))..)).))..))....)))))))))))......((((((.(((((......((((........))))......)))))...)))))).........................................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784GSM532876(GSM532876)
G547T. (cervix)		SRR189782SRR390723(GSM850202)
total small RNA. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGTAGGGC..... 221.000.00-----1.00----------------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGTATGATCTGGGC 281.000.00------1.00---------------
.......................................................CTCCTGCGGCGGCCCCT.................................................................................................................................................................................. 171.000.00------------1.00---------
...................................CAGGAGGAATGATTAGGAACATGATT............................................................................................................................................................................................. 2611.001.00---------------1.00------
...............................................................................................................................................................................................................................GGCTGGAGTGCAATGGTGAGC...... 211.000.00-----1.00----------------
.......................................................................................................................................................................................................................GTCACCCAGGCTGGAGTGCAAC............. 221.000.00-------1.00--------------
.........................................................CCTGCGGCGGCCCCATGC............................................................................................................................................................................... 180.500.00-----------------0.25-0.25--
.........................................................CCTGCGGCGGCCCCATGT............................................................................................................................................................................... 180.250.00--------------------0.25-
.........................................................TGGGGCCGCCGCAGG.................................................................................................................................................................................. 1540.250.25---------------------0.25