ID: uc004byw.1_intron_11_0_chr9_132719744_r.3p
GENE: FNBP1(5)
chr9:132719694-132719943-


(1)
AGO2.ip
(9)
B-CELL
(3)
BRAIN
(8)
BREAST
(22)
CELL-LINE
(2)
CERVIX
(4)
HEART
(5)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(30)
SKIN
(1)
TESTES
(1)
UTERUS
(2)
XRN.ip

Sense strand
TGGGAGGATCACCTGAGCCGGGAAGGTCAAAGCTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGTGACAAAGTGAGACCCTGACTGAAGAAAAAAAAAAGAAAAAGAACAATGCTCTTTGGGAGCTTTAGATAAAATTACATCTTCTCGTAGGACTCTTATGGTTTCATAATTATTTTCCTCTGATTTTAGAGTAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCA
................................................................................((((((.((((...(((((......................((((.....))))....(((...)))...)))))...))))..))))))................................................................................
.............................................................................78...............................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532881(GSM532881)
G696N. (cervix)
GSM956925PAZD5SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038856(GSM458539)
D11. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
TAX577741(Rovira)
total RNA. (breast)
..........................................................................................................................................................CTCGTAGGACTCTTAGC...............................................................................1716.000.00---------2.00-4.001.00------------1.001.00--------------------1.00-1.00-1.00------------1.00------------------1.00--1.00-1.00------
..........................................................................................................................................................CTCGTAGGACTCTTAGCGG.............................................................................1912.000.00---------1.00--1.00-----1.00--2.00---------2.001.00-----------------------------1.00---1.001.00---------------------1.00-----
.......................................................................................................................ATGCTCTTTGGGAGCTTTAGATAAAATTACATCTTCTCGTAGGACTCTTATGGTTTCATAATTATTTTCCTCTGATTTTAG..................................................8117.007.00-------7.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CAAAGAGGCGGACAGGGCGCA...2116.006.00----6.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGAACGCGATTGCAAAGAGGCGGA............2416.006.00---6.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CAAAGAGGCGGACAGGGCGCAG..2215.005.00----5.00------------------------------------------------------------------------------------------
......................................................................................................................................TTTAGATAAAATTACATC..................................................................................................1813.003.00-------------2.00-----------------------1.00---------------------------------------------------------
..........................................................................................................................................................CTCGTAGGACTCTTAGCG..............................................................................183.000.00-----------------------------------------1.00---------------1.00--------------------------1.00----------
...............................................ATGGCGCCACTGCACTCCAGCCGGC..................................................................................................................................................................................253.000.003.00----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................GAGGCGGACAGGGCGCAGC.1913.003.00-----3.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TTGAACGCGATTGCAAAGAGGCGGA............2513.003.00---1.00-------------------2.00-----------------------------------------------------------------------
........................................................................................................................................................................................................AGTAAAAGGCGATTTGAACG..............................2013.003.00-----1.00--------2.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGAGGCGGACAGGGCGCAGC.2013.003.00-----2.00---1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................................................................TGCAAAGAGGCGGACAGGG.......1912.002.00----------1.00-------------------------------1.00----------------------------------------------------
................................................................................................................................................................................................................................TGCAAAGAGGCGGACAGGGCGCAG..2412.002.00------------------------------2.00----------------------------------------------------------------
..............................................................................................................................................................................................................AGGCGATTTGAACGCGATTGCAAAGAGGCG..............3012.002.00------------------1.00--------------------------------------------------------------1.00-------------
......................................................................................................................................................................................................................................GAGGCGGACAGGGCGCAG..1812.002.00-----1.00-------------------------------------------------------------------------------------1.00---
....................................................................................................................................................................................................................TTTGAACGCGATTGCAAAGAGGCG..............2412.002.00---1.00---------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................AAAAGGCGATTTGAACGCGA...........................2012.002.00----------------------------------------------------1.00--------------------------------1.00---------
..................................................................................................................................................................................................................................CAAAGAGGCGGACAGGGCGCAGC.2312.002.00----------2.00------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................AAAGAGGCGGACAGGGCGCAGCA2312.002.00--------------------------------------------------------------------1.00--------1.00-----------------
.....................................................................................................................................................................................................................................AGAGGCGGACAGGGCGCAG..1912.002.00-----1.00-------------------------------------1.00---------------------------------------------------
....................................................................................................................................................................................................................TTTGAACGCGATTGCAAAGAGGCGG.............2512.002.00---1.00----------------------------1.00--------------------------------------------------------------
......................................................................................................................................................................................................................TGAACGCGATTGCAAAGAGGCGGAC...........2512.002.00---2.00-------------------------------------------------------------------------------------------
...............................................ATGGCGCCACTGCACTCCAGCCGGCG.................................................................................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------
...............................................ATGGCGCCACTGCACTCCAGCCGCGC.................................................................................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------
.................................................................AGCCTGGGTGACAAAGTGAGACCCACC..............................................................................................................................................................271.000.00---------------------------1.00-------------------------------------------------------------------
..........................................................................................................................................................CTCGTAGGACTCTTAGA...............................................................................171.000.00----------------------------------------------------------------------1.00------------------------
.................................................................................................................................................................................................................................GCAAAGAGGCGGACAGG........1711.001.00------------------------------------------------------------------------------1.00----------------
..................................................................................GAGACCCTGACTGAAGAG......................................................................................................................................................181.000.00--------------------------------------1.00--------------------------------------------------------
..............................................................................................................................................................................................................AGGCGATTTGAACGCGATT.........................1911.001.00----------------------------------------------------------------------------------1.00------------
.......................................................................................................................................................................................................................GAACGCGATTGCAAAGAGGCGGACAGGGCG.....3011.001.00---------------------------------------------------------------------1.00-------------------------
.................................................................................................................................................................................................................................GCAAAGAGGCGGACAGGG.......1811.001.00----------1.00------------------------------------------------------------------------------------
...................................................................................................................................................................................................................ATTTGAACGCGATTGCAAAGA..................2111.001.00----------------------1.00------------------------------------------------------------------------
................................................................................................................................................................................................................GCGATTTGAACGCGATTGCAAAGAG.................2511.001.00---------------------------------------------------------------------------1.00-------------------
.................................................................................................GAAAAAAAAAAGAAAAAGACGG...................................................................................................................................221.000.00------------------------------------------------1.00----------------------------------------------
..........................................................................................................................................................CTCGTAGGACTCTTAG................................................................................161.000.00---------------------------------------1.00-------------------------------------------------------
......................................................................................................................................................................................................................TGAACGCGATTGCAAAGAGGCGG.............2311.001.00---1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AACGCGATTGCAAAGAGGCG..............2011.001.00---------------------------------------------1.00-------------------------------------------------
.............................................................................................................................................................................................................AAGGCGATTTGAACGCGATTGCAAAGAGGCTGA............331.000.00-------------------1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................AAGGCGATTTGAACGCGATT.........................2011.001.00----------------1.00------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGAGGCGGACAGGGCGCA...1811.001.00---------------1.00-------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................CGGACAGGGCGCAGCAGAA191.000.00--------------------------------------------1.00--------------------------------------------------
...........................................................CACTCCAGCCTGGGTGACAAAGTGGTA....................................................................................................................................................................271.000.00-------------------------------------------------------1.00---------------------------------------
..............................................................................AAGTGAGACCCTGACTGAAGAAAAA...................................................................................................................................................2511.001.00--------------------------------------------------------------------------------1.00--------------
.......................................................................................................................................................................................................................................AGGCGGACAGGGCGCAGCAGTAA231.000.00--------------------------------------------------------1.00--------------------------------------
...........................................................................................................................................................................................................................GCGATTGCAAAGAGGCGGACAGGGCG.....2611.001.00-----1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TTGCAAAGAGGCGGACAGGGCG.....2211.001.00----------------------------1.00------------------------------------------------------------------
............................AAAGCTGCAGTGAGCCAAGACC........................................................................................................................................................................................................221.000.00-1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................TTCTCGTAGGACTCTG..................................................................................161.000.00--------------------1.00--------------------------------------------------------------------------
.......................................................................................................................................................................................................................GAACGCGATTGCAAAGAGGCGGAC...........2411.001.00--------------1.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGAGGCGGACAGGGCGCAGCAGGA2411.001.00---------------------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................CGGACAGGGCGCAGCAGCA191.000.00---------------------------------------------------------------------------------------------1.00-
....AGGATCACCTGAGCCGGGAAGGTC..............................................................................................................................................................................................................................2411.001.00--------------------------1.00--------------------------------------------------------------------
..............................................................................................................................................................................................................AGGCGATTTGAACGCGATTGCAAAGAGGCGGAC...........3311.001.00-------------------1.00---------------------------------------------------------------------------
..........................................................................................................................................................CTCGTAGGACTCTTATGGTTTCATAATT....................................................................2811.001.00----------------------1.00------------------------------------------------------------------------
...............................................ATGGCGCCACTGCACTCCAGCCGGGT.................................................................................................................................................................................261.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................ATTGCAAAGAGGCGGACAGGGCG.....2311.001.00------------------------1.00----------------------------------------------------------------------
..................................................................................................................................................................................................................................CAAAGAGGCGGACAGGGCGCAGGAG2511.005.00----------------------------------------------1.00------------------------------------------------
...........................................................................................................................................................................................................AAAAGGCGATTTGAACGCGATTGCAAAGAGGCGG.............3411.001.00--------------------------------------------------------------------------------------------1.00--
......................................................................................................................................................................................................................TGAACGCGATTGCAAAGAGGTGG.............231.000.00---1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................AGTAAAAGGCGATTTGCACG..............................201.000.00---------------------------------------------------------------------------------------1.00-------
........................................................................................................................................................................................................................AACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTTT381.000.00--------------------------------------------------------------------------1.00--------------------
...............................................................................................................................TGGGAGCTTTAGATAAAATTACATC..................................................................................................2511.001.00----------------------------------1.00------------------------------------------------------------
..............................................................................................................................................................................................................................ATTGCAAAGAGGCGGACAGGGCGCAGCA2811.001.00----------------------------1.00------------------------------------------------------------------
...................................................................................................................................AGCTTTAGATAAAATTACATC..................................................................................................2111.001.00---------------------------------1.00-------------------------------------------------------------
....................................................................................................................................................................................................................................AAGAGGCGGACAGGGCGCAGCAGC241.000.00-1.00---------------------------------------------------------------------------------------------
.....................GAAGGTCAAAGCTGCAGTGAGCCTA............................................................................................................................................................................................................251.000.00-------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................AAAATTACATCTTCTCGTAGG........................................................................................2111.001.00------------------------------------------------------------------------------------------1.00----
....AGGATCACCTGAGCCGGGGATG................................................................................................................................................................................................................................221.000.00-1.00---------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CGATTGCAAAGAGGCGGACAGG........2211.001.00-----1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................CGGACAGGGCGCAGCAGTAA201.000.00---------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................AAAAGGCGATTTGAACGCGATTGC.......................2411.001.00--------------------------------------------------1.00--------------------------------------------
...................................................................................................................................................................................................................................AAAGAGGCGGACAGGGCG.....1811.001.00-----------------------------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................AAGGCGATTTGAACGTTT...........................181.000.00---------------1.00-------------------------------------------------------------------------------
...............................................ATGGCGCCACTGCACTCCAGCCTGGGTTG..............................................................................................................................................................................291.000.00-1.00---------------------------------------------------------------------------------------------
...............................................ATGGCGCCACTGCACTCCAGCCGAC..................................................................................................................................................................................251.000.001.00----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................AAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGCA491.000.00-----------------------------------------------------------------------1.00-----------------------
..........................................................................................................................................................CTCGTAGGACTCTTATCGG.............................................................................191.000.00------------1.00----------------------------------------------------------------------------------
............................................................................................................................................................................................................AAAGGCGATTTGAACGCGA...........................1911.001.00-------------------------------------------------------------------------1.00---------------------
...............................................ATGGCGCCACTGCACTCCAGCCGGAC.................................................................................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGAGGCGGACAGGGCGCAGCA2111.001.00------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................CTCGTAGGACTCTTAGAGG.............................................................................191.000.00------------------------------------1.00----------------------------------------------------------
...........................................................................................................................................................................................................AAAAGGCGATTTGAACGCGATT.........................2211.001.00------------------------------------------------------1.00----------------------------------------
...............................................ATGGCGCCACTGCACTCCAGCCGAGC.................................................................................................................................................................................261.000.001.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................ACGCGATTGCAAAGA..................1511.001.00--------------------1.00--------------------------------------------------------------------------
................................................................................................AGAAAAAAAAAAGAAAAAGCAGC...................................................................................................................................231.000.00-------------------------------------------------------------------------------1.00---------------
.....GGATCACCTGAGCCGGGAAGGT...............................................................................................................................................................................................................................2211.001.00-------------1.00---------------------------------------------------------------------------------
................................................TGGCGCCACTGCACTCCAGCCGGCA.................................................................................................................................................................................251.000.001.00----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AGAGGCGGACAGGGCGCAGCC2111.003.00----------------1.00------------------------------------------------------------------------------
...................................................................................AGACCCTGACTGAAGAAAAAAAA................................................................................................................................................2320.500.50---------------------------------0.50-------------------------------------------------------------
.......................................................................................................................................TTAGATAAAATTACATC..................................................................................................1720.500.50----------------------------------0.50------------------------------------------------------------
..........................................................................................................................................GATAAAATTACATCTTC...............................................................................................1730.330.33----------------------------------------------------------------------------------------------0.33
........................................................................................................................................TAGATAAAATTACATC..................................................................................................1660.170.17---------------------------------0.17-------------------------------------------------------------

Antisense strand
TGGGAGGATCACCTGAGCCGGGAAGGTCAAAGCTGCAGTGAGCCAAGATGGCGCCACTGCACTCCAGCCTGGGTGACAAAGTGAGACCCTGACTGAAGAAAAAAAAAAGAAAAAGAACAATGCTCTTTGGGAGCTTTAGATAAAATTACATCTTCTCGTAGGACTCTTATGGTTTCATAATTATTTTCCTCTGATTTTAGAGTAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCA
................................................................................((((((.((((...(((((......................((((.....))))....(((...)))...)))))...))))..))))))................................................................................
.............................................................................78...............................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532881(GSM532881)
G696N. (cervix)
GSM956925PAZD5SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577742(Rovira)
total RNA. (breast)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR038856(GSM458539)
D11. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
TAX577741(Rovira)
total RNA. (breast)
................................................................................................AGAAAAAAAAAAGAAAAAGCCAG................................................................................................................................... 234.000.001.00-1.00---2.00----------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGCAT.................................................................................................................................... 243.000.00--2.00---1.00----------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGAATC................................................................................................................................... 253.000.00-3.00---------------------------------------------------------------------------------------------
........................................................CTGCACTCCAGCCTGGGTGACAACGGG....................................................................................................................................................................... 273.000.002.00--------------------------1.00-------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGAATCT.................................................................................................................................. 262.000.00-2.00---------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAACAT..................................................................................................................................... 232.000.00--1.00--------------------------1.00-----------------------------------------------------------------
.........................................GCCAAGATGGCGCCACTGCACTCCAGCCAG................................................................................................................................................................................... 302.000.002.00----------------------------------------------------------------------------------------------
.............................................................................................TGAAGAAAAAAAAAAGAAAACTG...................................................................................................................................... 232.000.00--2.00--------------------------------------------------------------------------------------------
......................AAGGTCAAAGCTGCAGTGAGGGGG............................................................................................................................................................................................................ 242.000.002.00----------------------------------------------------------------------------------------------
........................................................CTGCACTCCAGCCTGGGTGACAACGCC....................................................................................................................................................................... 272.000.002.00----------------------------------------------------------------------------------------------
........................................................CTGCACTCCAGCCTGGGTGACAAAGTCTG..................................................................................................................................................................... 291.000.00-1.00---------------------------------------------------------------------------------------------
.................................................GGCGCCACTGCACTCCAGCGT.................................................................................................................................................................................... 211.000.00----------------------------------------1.00------------------------------------------------------
........................................................CTGCACTCCAGCCTGGGTGACAACAAC....................................................................................................................................................................... 271.000.00-1.00---------------------------------------------------------------------------------------------
..............................................GATGGCGCCACTGCACTCCAGGGC.................................................................................................................................................................................... 241.000.001.00----------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAGGC........................................................................................................................................ 201.000.001.00----------------------------------------------------------------------------------------------
.............................................................CTCCAGCCTGGGTGACAAA.......................................................................................................................................................................... 191.000.00----------------------------------------------------------1.00------------------------------------
.....................................................................................................AAAAAAAGAAAAAGAACATTG................................................................................................................................ 211.000.00------1.00----------------------------------------------------------------------------------------
.............................................................CTCCAGCCTGGGTGACAAAGTGAGACCCTCGC............................................................................................................................................................. 321.000.001.00----------------------------------------------------------------------------------------------
...............................................................................................AAGAAAAAAAAAAGAAAAAGACTT................................................................................................................................... 241.000.00--1.00--------------------------------------------------------------------------------------------
...............................................................................................AAGAAAAAAAAAAGAAAAAGAATAT.................................................................................................................................. 251.000.00--1.00--------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGATGTA.................................................................................................................................. 261.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGTTG.................................................................................................................................... 241.000.00--1.00--------------------------------------------------------------------------------------------
.................................................GGCGCCACTGCACTCCAGCCTGGGTGATCGG.......................................................................................................................................................................... 311.000.001.00----------------------------------------------------------------------------------------------
.......................................GAGCCAAGATGGCGCCACTGCACTCCAGCG..................................................................................................................................................................................... 301.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGCAC.................................................................................................................................... 241.000.00--------1.00--------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGTAGC................................................................................................................................... 251.000.001.00----------------------------------------------------------------------------------------------
................................................................................................AGAAAAAAAAAAGAAAAAGAAAAG.................................................................................................................................. 241.000.00------1.00----------------------------------------------------------------------------------------
................................................................................................AGAAAAAAAAAAGAAAAAGAAATG.................................................................................................................................. 241.000.00--------1.00--------------------------------------------------------------------------------------
.......................................................................................CCTGACTGAAGAAAAACAC................................................................................................................................................ 191.000.00-----------------------------------1.00-----------------------------------------------------------
..................................................................................................AAAAAAAAAAGAAAAAGAACAAGC................................................................................................................................ 241.000.001.00----------------------------------------------------------------------------------------------
.................................................GGCGCCACTGCACTCCAGCCTTCTC................................................................................................................................................................................ 251.000.00-1.00---------------------------------------------------------------------------------------------
...............................................................................................AAGAAAAAAAAAAGAAAAAGAGAGG.................................................................................................................................. 251.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGAACAG.................................................................................................................................. 261.000.00-----------------1.00-----------------------------------------------------------------------------
.................................................................................................GAAAAAAAAAAGAAAAAGAAGGC.................................................................................................................................. 231.000.001.00----------------------------------------------------------------------------------------------
..........................................................GCACTCCAGCCTGGGTGACAAAGTCG...................................................................................................................................................................... 261.000.001.00----------------------------------------------------------------------------------------------
..................................................GCGCCACTGCACTCCAGCCTGGGTGACAATG......................................................................................................................................................................... 311.000.001.00----------------------------------------------------------------------------------------------
.................................................GGCGCCACTGCACTCCAGCCTGGGTCTT............................................................................................................................................................................. 281.000.00----------------------------------------------------------------------------1.00------------------
................................................................................................AGAAAAAAAAAAGAAAAAGAAG.................................................................................................................................... 221.000.001.00----------------------------------------------------------------------------------------------
.............................................................................................TGAAGAAAAAAAAAAGACCAG........................................................................................................................................ 211.000.00------1.00----------------------------------------------------------------------------------------
.................................................................AGCCTGGGTGACAAAGTGAGACCCTCTGG............................................................................................................................................................ 291.000.001.00----------------------------------------------------------------------------------------------
................................................TGGCGCCACTGCACTCCAGCCTGGGTGACACA.......................................................................................................................................................................... 321.000.00-1.00---------------------------------------------------------------------------------------------
.................................................GGCGCCACTGCACTCCAGCCTTTG................................................................................................................................................................................. 241.000.001.00----------------------------------------------------------------------------------------------
........................................................................................................................................................................................TTTCCTCTGATTTTAGGGTT.............................................. 201.000.00-----------------------------------------------------------1.00-----------------------------------
.............................................................................................TGAAGAAAAAAAAAAGAAAAAGAAAG................................................................................................................................... 261.000.00--1.00--------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGAATGG.................................................................................................................................. 261.000.001.00----------------------------------------------------------------------------------------------
........................................................CACTTTGTCACCCAGGCTGGAGTGCAG....................................................................................................................................................................... 2701.001.00------------------------------------------------------------------------1.00----------------------
.............................................................................................TGAAGAAAAAAAAAAGAAAAAGTTAG................................................................................................................................... 261.000.00------1.00----------------------------------------------------------------------------------------
................................................................................................AGAAAAAAAAAAGAAAAAGAACAG.................................................................................................................................. 241.000.00-1.00---------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAGG......................................................................................................................................... 191.000.001.00----------------------------------------------------------------------------------------------
..........................................................GCACTCCAGCCTGGGTGACAAAGGCA...................................................................................................................................................................... 261.000.00-1.00---------------------------------------------------------------------------------------------
.....................GAAGGTCAAAGCTGCAGTGAGCCGGAA.......................................................................................................................................................................................................... 271.000.00-----------------------------------------------------------------1.00-----------------------------
.................................................GGCGCCACTGCACTCCAGCCTGGGTGATCG........................................................................................................................................................................... 301.000.001.00----------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAGTAG...................................................................................................................................... 221.000.001.00----------------------------------------------------------------------------------------------
..................................................................GCCTGGGTGACAAAGTGAGAGGAG................................................................................................................................................................ 241.000.001.00----------------------------------------------------------------------------------------------
...............................................................................................AAGAAAAAAAAAAGAAAAAGAAGGTG................................................................................................................................. 261.000.00-1.00---------------------------------------------------------------------------------------------
.................................................................................................GAAAAAAAAAAGAAAAAGAAATTG................................................................................................................................. 241.000.00-----------------1.00-----------------------------------------------------------------------------
......................................................................................................AAAAAAGAAAAAGAACAATCTTG............................................................................................................................. 231.000.00--------1.00--------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGGAG.................................................................................................................................... 241.000.00-----------------------------1.00-----------------------------------------------------------------
................................................................................................AGAAAAAAAAAAGAAAAAGCATG................................................................................................................................... 231.000.00--------1.00--------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAAAAGTTG.................................................................................................................................... 241.000.00--1.00--------------------------------------------------------------------------------------------
........................................................CTGCACTCCAGCCTGGGTGACAACCA........................................................................................................................................................................ 261.000.001.00----------------------------------------------------------------------------------------------
....................................................................................................AAAAAAAAGAAAAAGAACACCCG............................................................................................................................... 231.000.001.00----------------------------------------------------------------------------------------------
............................................CTGGAGTGCAGTGGCGCCATCTT....................................................................................................................................................................................... 2301.001.00------------------------------------------------------------1.00----------------------------------
.................................................GGCGCCACTGCACTCCAGCCTGGGTTGGC............................................................................................................................................................................ 291.000.001.00----------------------------------------------------------------------------------------------
.................................................................................................GAAAAAAAAAAGAAAAAGAAAAAG................................................................................................................................. 241.000.00------1.00----------------------------------------------------------------------------------------
................................................................CAGCCTGGGTGACAAAGTGACAGG.................................................................................................................................................................. 241.000.001.00----------------------------------------------------------------------------------------------
................................................................................................AGAAAAAAAAAAGAAAAAGAAAAG.................................................................................................................................. 241.000.00--1.00--------------------------------------------------------------------------------------------
..........................................................................................GACTGAAGAAAAAAAAAAGAAG.......................................................................................................................................... 221.000.00-1.00---------------------------------------------------------------------------------------------
...............................................................................................AAGAAAAAAAAAAGAAAAAGAACAATTAG.............................................................................................................................. 291.000.00--1.00--------------------------------------------------------------------------------------------
...............................................................................................AAGAAAAAAAAAAGAAAAAGAACG................................................................................................................................... 241.000.001.00----------------------------------------------------------------------------------------------
..............................................................................................GAAGAAAAAAAAAAGAAGGAG....................................................................................................................................... 211.000.00-1.00---------------------------------------------------------------------------------------------
.................................................................................................GAAAAAAAAAAGAAAAAGAACG................................................................................................................................... 221.000.00--1.00--------------------------------------------------------------------------------------------
...........................................................................................ACTGAAGAAAAAAAAATCTA........................................................................................................................................... 201.000.00--------1.00--------------------------------------------------------------------------------------