ID: uc004bxg.2_intron_0_0_chr9_131857892_r
GENE: (13)
chr9:131857842-131858326-


(1)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(5)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(14)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGGACACCTCCTACGCCATCGCCATGCACTTCCACCTCTCCACCAGCCAGGTGGGCCACTGCCCCAGGTGCCCCGGGGGCTGGAGGCAGAGAACCCACTGGTAGTTTGATGTGGCCTACACAGGCCCCACTGACCCATTGCCAACACAGCTGAGTTCCAGAGGAGGAGCTGGGGGCAGGGGCCTCTCTGCAGCCCAGGCAGGCTGAGAAGGGGTCAGTGCTCCTCATGGGAGAATCAGCTTCGCTGACTCACTGGTCAGGTATAAAGGAACATTTGATTCGTGCCAGCCTGTAGTGGTTGCTGGGATATAGCAGGGGACAGACCATGATCCCTGCCCACAAGGGGCCTGCAGTCTTGGCGGAAGCACAGGCAGCCTGGGAAGTGCTGGGGGCGTCAAGGTAGGGGAGCTGAGAGCTTTCATCCTGCCGTCCCCAGGTCCCTGCCAAGACAGACTGTGTCATGTTCTTCGGGCCCGTGGTCCCCGA
..................................................(((((...((((((((...((((...))))))).)))))....))))).((((((((..((.(((((....))))).))..))...)))))).......................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.............................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189787SRR189786SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.........................................................ACTGCCCCAGGTGCCTGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................1917.000.004.003.002.002.005.00---------------------------------------1.00--------------
........................................................................CCGGGGGCTGGAGGCTTA...........................................................................................................................................................................................................................................................................................................................................................................................................184.000.00----1.00------------1.00------------------------1.00--1.00-------------
.........................................................ACTGCCCCAGGTGCCGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................194.000.001.00--3.00-------------------------------------------------------
.........................................................ACTGCCCCAGGTGCCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................183.000.00-1.00---------------------1.00---------1.00-------------------------
.......................................................CCACTGCCCCAGGTGCCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................202.000.00--1.00-----------1.00--------------------------------------------
.......................................................CCACTGCCCCAGGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................1671.291.29-------0.29--------------------------------------------0.140.140.140.140.140.140.14
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCTGCCGTCCCCAGAATT..............................................221.000.00----------------------------------1.00------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGGGCGTCAAGGTAGGA.................................................................................221.000.00--------------------------------------1.00--------------------
.......................................................CCACTGCCCCAGGTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................1801.001.00------------------------------1.00----------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCATCCTGCCGTCCCCAGT.................................................221.000.00----------------------1.00------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCCTGCCGTCCCCAGA.................................................201.000.00-------1.00---------------------------------------------------
.........................................................ACTGCCCCAGGTGCCTCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................AAGGTAGGGGAGCTGAGAGCTT....................................................................2211.001.00------------------------------------------------1.00----------
.........................................................ACTGCCCCAGGTGCCCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00---------------------------------------------------------
.......................................................CCACTGCCCCAGGTGCCCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--1.00--------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGGCGTCAAGGTCGG..................................................................................191.000.00-----------------------------------------1.00-----------------
......................................................GCCACTGCCCCAGGTGCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00---------------------1.00-------------------------------------
.........................................................ACTGCCCCAGGTGCCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--1.00--------------------------------------------------------
.......................................................CCACTGCCCCAGGTGCCCCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-1.00---------------------------------------------------------
........................................................................CCGGGGGCTGGAGGCGT............................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------------------1.00---------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCTGCCGTCCCCAGATTT..............................................221.000.00-----------------------------------1.00-----------------------
................................................................CAGGTGCCCCGGGGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-----------1.00-----------------------------------------------
............ACGCCATCGCCATGCACTTCCACCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-----1.00-----------------------------------------------------
...............CCATCGCCATGCACTTCCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----1.00-----------------------------------------------------
........................TGCACTTCCACCTCTCCACCAGCCAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-------1.00---------------------------------------------------
.........................................................ACTGCCCCAGGTGCCGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACTGTGTCATGTT.....................1611.001.00----------------------------------------1.00------------------
...................................................................................................................................................................................................AGGCAGGCTGAGAAGTTA................................................................................................................................................................................................................................................................................181.000.00---------------------------1.00-------------------------------
.........................................................ACTGCCCCAGGTGCCTTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.001.00----------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGGCGTCAAGGTAGGG.................................................................................2011.001.00-----------------------------------------------1.00-----------
.........................................................ACTGCCCCAGGTGCCCGGTA........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--1.00--------------------------------------------------------
.......................................................CCACTGCCCCAGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................1501.001.00------------------------1.00----------------------------------
...........TACGCCATCGCCATGCACTTCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-----1.00-----------------------------------------------------
.......................................................CCACTGCCCCAGGTGCCTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------1.00--------------------------------------------------
................................................................................................................................................................AGGAGGAGCTGGGGGCAGGGGGG..............................................................................................................................................................................................................................................................................................................231.000.00---------1.00-------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGACTGTGTCATGTT.....................1911.001.00------1.00----------------------------------------------------
...............CCATCGCCATGCACTTCCACCTCTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00----------1.00------------------------------------------------
..........................................................................GGGGGCTGGAGGCAGAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---------------------------------------1.00-------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGACTGTGTCATGTTC....................1911.001.00--------------------------1.00--------------------------------
......................................................................................................................................................TGAGTTCCAGAGGAGATGT............................................................................................................................................................................................................................................................................................................................191.000.00----------------------------1.00------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCCTGCCGTCCCCAGT.................................................211.000.00--------------------1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGGGCGTCAAGGTAGGGG................................................................................2311.001.00--------------------------------1.00--------------------------
.......................................................CCACTGCCCCAGGTGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------------------------
......................................................GCCACTGCCCCAGGTGCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00-----------------------------1.00-----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACAGACTGTGTCATGTTCTTCGGGC.............2811.001.00----------1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TGCTGGGGGCGTCAAGGTAG...................................................................................2011.001.00-------------------------------------1.00---------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCATCCTGCCGTCCCCAGA.................................................211.000.00------------------------------------1.00----------------------
.......................................................CCACTGCCCCAGGTGCCGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00---1.00-------------------------------------------------------
.............................................................................................................................................................CAGAGGAGGAGCTGGGCAG.....................................................................................................................................................................................................................................................................................................................191.000.00------------------1.00----------------------------------------
............ACGCCATCGCCATGCACTTCCACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------------1.00---------------------------------------
............ACGCCATCGCCATGCACTTCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00------1.00----------------------------------------------------
................................................................................................................................................................................................CCCAGGCAGGCTGAGAAGGGGTCAGTGC.........................................................................................................................................................................................................................................................................2811.001.00----------------------------------------------1.00------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGACTGTGTCATGTTCTT..................2211.001.00------1.00----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................GGCAGCCTGGGAAGTTGC...................................................................................................181.000.00-------------------------1.00---------------------------------
.........................................................ACTGCCCCAGGTGCCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--1.00--------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCTTCGGGCCCGT.........1711.001.00-------------------------------------------1.00---------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCTGCCGTCCCCAGACTT..............................................221.000.00-------------1.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCTGCCGTCCCCAGATT...............................................211.000.00------------1.00----------------------------------------------
.........................................................ACTGCCCCAGGTGCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------1.00---------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................TGGGAAGTGCTGGGGGC.............................................................................................1720.500.50-----------0.50-----------------------------------------------

Antisense strand
TGGACACCTCCTACGCCATCGCCATGCACTTCCACCTCTCCACCAGCCAGGTGGGCCACTGCCCCAGGTGCCCCGGGGGCTGGAGGCAGAGAACCCACTGGTAGTTTGATGTGGCCTACACAGGCCCCACTGACCCATTGCCAACACAGCTGAGTTCCAGAGGAGGAGCTGGGGGCAGGGGCCTCTCTGCAGCCCAGGCAGGCTGAGAAGGGGTCAGTGCTCCTCATGGGAGAATCAGCTTCGCTGACTCACTGGTCAGGTATAAAGGAACATTTGATTCGTGCCAGCCTGTAGTGGTTGCTGGGATATAGCAGGGGACAGACCATGATCCCTGCCCACAAGGGGCCTGCAGTCTTGGCGGAAGCACAGGCAGCCTGGGAAGTGCTGGGGGCGTCAAGGTAGGGGAGCTGAGAGCTTTCATCCTGCCGTCCCCAGGTCCCTGCCAAGACAGACTGTGTCATGTTCTTCGGGCCCGTGGTCCCCGA
..................................................(((((...((((((((...((((...))))))).)))))....))))).((((((((..((.(((((....))))).))..))...)))))).......................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.............................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189787SRR189786SRR189784SRR037937(GSM510475)
293cand2. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
.........CCTACGCCATCGCCATTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------1.00-------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCCGTCCCCAGGTCCCTGCCAAGA..................................... 281.000.00---------1.00-------------------------------------------------
.........................................................................................................................ATGGGTCAGTGGGGCCT........................................................................................................................................................................................................................................................................................................................................................... 1711.001.00----------------1.00------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................CCCCTACCTTGACGCCCCCAGCACT................................................................................ 2511.001.00--------1.00--------------------------------------------------
....................................................................................................................................................................................CCTGGGCTGCAGAGAGGC............................................................................................................................................................................................................................................................................................... 1820.500.50--------------------------------------------------0.50--------
....................................................................................................................................................................................CTGGGCTGCAGAGAGGC................................................................................................................................................................................................................................................................................................ 1740.250.25---------------------------------------------------0.25-------