ID: uc004bws.1_intron_8_0_chr9_131730997_f.5p
GENE: NUP188(9)
chr9:131730947-131731196+


(1)
AGO2.ip 		(10)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(10)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AATAGGCACCTGGTGGATGAGACTATGGATCCTTTTGTAGATCGGATTGGGTAAGTCAGTGAATTGAACATCATGGAACTTGCAGTGTTTAGAGCATTGATACTATAGTGGTATGTAAGCAGGTAGGGGGTAGGTGTACTTTTCACTTAATCGGTGGGGAAATAGGTCTACTGCCACGTTCCCTTTCATGCAGGGAGTAAAGACTGGGATTGAGAGAGGACTCTCAAAATGAGTATTGTAATCTGCTCTT
.........................................................((((((....(((((......(((((..(((((...((((...(((....)))..))))))))).))))).....)))))....)))))).......................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577743(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577744(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................GGGGGTAGGTGTACTTTT...........................................................................................................18198.0098.0047.0020.0014.008.00-5.001.001.001.00-1.00----------------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTTT..........................................................................................................19165.0098.0018.0018.006.007.00--3.003.003.00-1.00------1.00--2.00------1.00--1.00-------1.00------
.............................................................................................................................GGGGGTAGGTGTACTTTTTT.........................................................................................................2017.0098.001.003.001.00---1.00------1.00-------------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTTA..........................................................................................................1917.0098.002.004.00--------1.00----------------------------------
..................................TTGTAGATCGGATTGG........................................................................................................................................................................................................1614.004.00----1.00----2.00-------------1.00---------------------
.............................................................................................................................GGGGGTAGGTGTACTTT............................................................................................................1713.003.00--2.00---------1.00--------------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTA...........................................................................................................1813.003.003.00--------------------------------------------
.............................TCCTTTTGTAGATCGGATTGG........................................................................................................................................................................................................2112.002.00-------------------------1.00-----1.00-------------
............................ATCCTTTTGTAGATCGGATTGG........................................................................................................................................................................................................2212.002.00---------------2.00-----------------------------
.......................TATGGATCCTTTTGTAGATCGGATTGGC.......................................................................................................................................................................................................282.000.00----2.00----------------------------------------
.................................TTTGTAGATCGGATTGG........................................................................................................................................................................................................1712.002.00--------------2.00------------------------------
...................................TGTAGATCGGATTGGCTA.....................................................................................................................................................................................................182.000.00-------------1.00-----1.00-------------------------
................................TTTTGTAGATCGGATTGG........................................................................................................................................................................................................1812.002.00----1.00----1.00-----------------------------------
......................................................................................................................................................................................................................AGAGGACTCTCAAAAGGA..................181.000.00------------------------------------------1.00--
..........TGGTGGATGAGACTATGG..............................................................................................................................................................................................................................1811.001.00--------------------------1.00------------------
.............................................................................................................................GGGGGTAGGTGTACTTTG...........................................................................................................1811.003.00-1.00-------------------------------------------
.......................................................................................................................................................................................................AAGACTGGGATTGAGAGCTC...............................201.000.00------------------1.00--------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTTTTTG.......................................................................................................2211.0098.00-1.00-------------------------------------------
.......................TATGGATCCTTTTGTAGATCGGATT..........................................................................................................................................................................................................2511.001.00----------------------1.00----------------------
...........GGTGGATGAGACTATGGAT............................................................................................................................................................................................................................1911.001.00--------------------------------1.00------------
................................................................................................................................GGTAGGTGTACTTTTTGG........................................................................................................181.000.00------------1.00--------------------------------
............................................................................................................................................................................................................TGGGATTGAGAGAGGAC.............................1711.001.00-----------------------------------1.00---------
......................................................................................................................................................................................................................AGAGGACTCTCAAAATG...................1711.001.00----------------------------------1.00----------
..................................TTGTAGATCGGATTGGCT......................................................................................................................................................................................................1811.004.00-----------------------------1.00---------------
................................TTTTGTAGATCGGATTGGC.......................................................................................................................................................................................................1911.002.00-----------1.00---------------------------------
...............................CTTTTGTAGATCGGATTGGC.......................................................................................................................................................................................................201.000.00----1.00----------------------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTTC..........................................................................................................1911.001.001.00--------------------------------------------
..............................CCTTTTGTAGATCGGATT..........................................................................................................................................................................................................1811.001.00-----------------------------------------1.00---
..................................................................AACATCATGGAACTTGCAGTGTT.................................................................................................................................................................2311.001.00-----------1.00---------------------------------
..................................TTGTAGATCGGATTGGCTA.....................................................................................................................................................................................................1911.004.00----------------------------1.00----------------
............................ATCCTTTTGTAGATCCGAT...........................................................................................................................................................................................................191.000.00-------------------------------------------1.00-
.............................................................................................................................GGGGGTAGGTGTACTTCTT..........................................................................................................191.000.001.00--------------------------------------------
.................................TTTGTAGATCGGATT..........................................................................................................................................................................................................1511.001.00------------------------1.00--------------------
...............GATGAGACTATGGATCCTTT.......................................................................................................................................................................................................................2011.001.00-----------------1.00---------------------------
..............................CCTTTTGTAGATCGGATTG.........................................................................................................................................................................................................1911.001.00-------------------1.00-------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTCT..........................................................................................................1911.003.00-1.00-------------------------------------------
.............................................................................................................................GGGGGTAGGTGTACTCTT...........................................................................................................181.000.001.00--------------------------------------------
.............................................................................................................................GGGGGTAGGTGTACTTTC...........................................................................................................1811.003.00-1.00-------------------------------------------
.ATAGGCACCTGGTGGATGAGACC..................................................................................................................................................................................................................................231.000.00------------------1.00--------------------------
.............................................................................................................................GGGGGTAGGTGTACTGTG...........................................................................................................181.000.00--1.00------------------------------------------
.............................................................................................................................GGGGGTAGGTGTACTTATTT.........................................................................................................201.000.00-1.00-------------------------------------------
.........................................TCGGATTGGGTAAGTCAGTGAATTGAACATCAT................................................................................................................................................................................3311.001.00---------------------1.00-----------------------
.................................TTTGTAGATCGGATTGGCT......................................................................................................................................................................................................1911.002.001.00--------------------------------------------
........................................................................................................................................................................................................AGACTGGGATTGAGAGAGGACT............................2211.001.00-----------1.00---------------------------------
.........CTGGTGGATGAGACTATGGATC...........................................................................................................................................................................................................................2211.001.00---------------------------------------1.00-----
......................CTATGGATCCTTTTGTAGATCGGATTGG........................................................................................................................................................................................................2811.001.00---------1.00-----------------------------------
................ATGAGACTATGGATCCTTTTGTAGA.................................................................................................................................................................................................................2511.001.00---------------------------------1.00-----------
..................................................GTAAGTCAGTGAATTGAAC.....................................................................................................................................................................................1911.001.00------------------------------------1.00--------
..........TGGTGGATGAGACTATGGATCCTTTTGTAGAT................................................................................................................................................................................................................3211.001.00----------------------------------------1.00----
.............................................................................................................................GGGGGTAGGTGTACTTGTTG.........................................................................................................201.000.00-1.00-------------------------------------------
...................AGACTATGGATCCTTAC......................................................................................................................................................................................................................171.000.00-------------------------------------1.00-------
............GTGGATGAGACTATGG..............................................................................................................................................................................................................................1630.330.33--------------------------------------------0.33
.........................TGGATCCTTTTGTAGA.................................................................................................................................................................................................................1650.200.20----0.20----------------------------------------

Antisense strand
AATAGGCACCTGGTGGATGAGACTATGGATCCTTTTGTAGATCGGATTGGGTAAGTCAGTGAATTGAACATCATGGAACTTGCAGTGTTTAGAGCATTGATACTATAGTGGTATGTAAGCAGGTAGGGGGTAGGTGTACTTTTCACTTAATCGGTGGGGAAATAGGTCTACTGCCACGTTCCCTTTCATGCAGGGAGTAAAGACTGGGATTGAGAGAGGACTCTCAAAATGAGTATTGTAATCTGCTCTT
.........................................................((((((....(((((......(((((..(((((...((((...(((....)))..))))))))).))))).....)))))....)))))).......................................................................................................
..................................................51..............................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577743(Rovira)
total RNA. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577744(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
..............................CCTTTTGTAGATCGGAGA.......................................................................................................................................................................................................... 181.000.00----------------1.00----------------------------
...............................CTTTTGTAGATCGGATGA......................................................................................................................................................................................................... 181.000.00----------------1.00----------------------------