ID: uc004bwn.2_intron_7_0_chr9_131698925_f.3p
GENE: PHYHD1(8)
chr9:131702448-131702697+


(5)
B-CELL
(3)
BRAIN
(20)
BREAST
(31)
CELL-LINE
(4)
CERVIX
(3)
FIBROBLAST
(3)
HEART
(2)
HELA
(1)
KIDNEY
(6)
LIVER
(2)
OTHER
(1)
RRP40.ip
(41)
SKIN
(1)
TESTES
(4)
UTERUS
(2)
XRN.ip

Sense strand
TCACGGTTTAGGAAATTGAGGCTTTGAGAGGTGAAATCGCTTGCCTTAGAGTCCTGGGCCAGGAAGTGATGAGATTCTAACTGATCATGGGAAGGCTGGCCCTGGAGAGCACCCAGAGGACTGAGGAATAGGTAATGAGGCCAAGGTGAGGTGGAAACAGGCAAAAGGATGAGCTCCTCACCCCCCGTGGGCCTGCTTAGTCTCCCCTCATCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGG
..........................................................((.....(((((.((.......)).))))).)).((((.((((((((......(((((....))).))....(((......)))..(((((((((....)).((..........)).)))))))..))).))))).))))....................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM416733(GSM416733)
HEK293. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR038859(GSM458542)
MM386. (cell line)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR189784SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.............................................................GGAAGTGATGAGATTCTAACTGATC....................................................................................................................................................................251357.00357.0054.0058.0041.0022.0050.0037.00-11.004.0010.0014.003.002.004.00-2.004.00--1.006.002.001.00---------1.00-------1.003.002.003.00-------2.00---------2.00-------2.00-----1.00-1.00--1.00--1.00--1.001.00------------1.00----1.00--1.00----1.001.001.001.00--1.00------1.00-
............................................................AGGAAGTGATGAGATTCTAACTGATCA...................................................................................................................................................................271137.00137.0019.0018.00-20.00--6.00-1.001.004.002.003.001.00---2.001.001.00-2.001.004.004.00-1.003.00--3.001.00-----2.001.001.00--1.00--3.001.00-1.001.00--1.00----1.00-2.001.00-1.00---1.002.002.00-1.00-1.002.00--1.00-----1.00-----1.001.00-1.00---------------1.00-1.001.001.001.00-----1.00-1.00----1.00--
.............................................................GGAAGTGATGAGATTCTAACTGATCA...................................................................................................................................................................261130.00130.0020.0015.0024.008.0011.0018.00-24.002.002.00--1.00-1.00----1.00-----------2.00----------------------------------------------1.00-------------------------------------------------
................................................................AGTGATGAGATTCTAACTGATC....................................................................................................................................................................221120.00120.0023.0019.0012.0016.002.0015.00-13.005.00---5.002.00-1.00---2.00-1.00----------3.00------------------------------------------------1.00----------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATC....................................................................................................................................................................261116.00116.00--7.005.00-1.0044.00-4.002.00-10.001.00-3.00-2.001.001.001.00--1.001.001.00-1.00--2.00---4.00---1.001.00-2.00-----1.00-1.00-2.00----1.00----1.00--2.001.00-1.00-----1.00--1.00--------1.00-----1.00--1.00---1.00-1.00----1.00-1.00--------------1.00------
............................................................AGGAAGTGATGAGATTCTAACTGATCAT..................................................................................................................................................................28161.0061.009.008.0013.0010.005.00-2.00----1.00--1.001.00------1.00---1.00-1.00----------2.00------1.00-----1.00-----------1.002.00----1.00---------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGATCAT..................................................................................................................................................................27137.0037.00--8.001.0017.00---3.00-2.001.00-1.00-2.00----------1.00-----------1.00-----------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATCATG.................................................................................................................................................................29129.0029.00--6.0013.00----3.00------------1.002.00----1.00-1.00--------------------------------------------2.00-----------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGATCATG.................................................................................................................................................................28118.0018.002.003.00-6.001.003.00--2.00----1.00------------------------------------------------------------------------------------------------------------------
.................................................................GTGATGAGATTCTAACTGATC....................................................................................................................................................................21115.0015.00---5.00-9.00-1.00------------------------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGA......................................................................................................................................................................2418.008.00------2.00----------2.001.00---------2.00-----------------------------1.00---------------------------------------------------------------------
.....................................................................TGAGATTCTAACTGATCA...................................................................................................................................................................1816.006.00--6.00-----------------------------------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTG.......................................................................................................................................................................2215.005.00------------------------------------3.00----------------2.00--------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGAT.....................................................................................................................................................................2515.005.00--------------1.00---4.00-------------------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGAT.....................................................................................................................................................................2414.004.00--------------1.00-2.001.00--------------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTG.......................................................................................................................................................................2314.004.00--------------1.00--2.00-------------------------------------------------------------------1.00------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTTATC....................................................................................................................................................................254.000.00-----2.00----1.00--1.00------------------------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGA......................................................................................................................................................................2314.004.00---------2.00--------1.00---------1.00---------------------------------------------------------------------------------------------------
..............................................................GAAGTGATGAGATTCTAACTGATC....................................................................................................................................................................2413.003.00---------3.00----------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TCACCCCCCGTGGGCCTG.......................................................1813.003.00-----------------------------------3.00--------------------------------------------------------------------------------------------
.................................................................GTGATGAGATTCTAACTGATCATA.................................................................................................................................................................243.000.00---3.00----------------------------------------------------------------------------------------------------------------------------
................................................................................CTGATCATGGGAAGGCTGGCC.....................................................................................................................................................2113.003.00------------------------------------------------------2.00----------------------------------------------1.00--------------------------
.............................................................GGAAGTGATGAGATTCTAACTGATCAA..................................................................................................................................................................2713.00130.00-------2.001.00-----------------------------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGATA....................................................................................................................................................................2512.004.00--1.00-------------------------------------------------------1.00---------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGCTC....................................................................................................................................................................2512.005.00-1.00------------------------------------------------------------------------------------------1.00-----------------------------------
.............................................................GGAAGTGATGAGATTCTAAC.........................................................................................................................................................................2012.002.00---------2.00----------------------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACT........................................................................................................................................................................2212.002.00--------------1.00-------------------------------------------------------------1.00---------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGGTC....................................................................................................................................................................2512.005.00---1.001.00---------------------------------------------------------------------------------------------------------------------------
...............................................................................ACTGATCATGGGAAGGCTGGCC.....................................................................................................................................................2211.001.00--------------------------------------------------------------------------------------------------------------------------1.00-----
.............................................................................TAACTGATCATGGGAAGGCTGGCCCTGG.................................................................................................................................................2811.001.00-------------------------1.00------------------------------------------------------------------------------------------------------
....................................................................ATGAGATTCTAACTGATCAT..................................................................................................................................................................2011.001.00---------------1.00----------------------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGATT....................................................................................................................................................................2511.004.00---1.00----------------------------------------------------------------------------------------------------------------------------
..................................................................................GATCATGGGAAGGCTGGCC.....................................................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00------------------------------------------------
..................................................................................................................AGAGGACTGAGGAATAGGTA....................................................................................................................2011.001.00---------------------------------------------------------------------------------------------------------------------1.00----------
.......................................................................................................GGAGAGCACCCAGAGGACTGAGGAATA........................................................................................................................2711.001.00-------------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................CCCAGAGGACTGAGGAATAGGT.....................................................................................................................2211.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................CAGAGGACTGAGGAATAGGTAATG.................................................................................................................2411.001.00------------------------------------------------------------------------------------------------1.00-------------------------------
..................................................................................................................AGAGGACTGAGGAATAGGT.....................................................................................................................1911.001.00-----------------------------------------------------------------------1.00--------------------------------------------------------
..............................................................................AACTGATCATGGGAAGGCTGGCT.....................................................................................................................................................231.000.00--------------------------------------------------------1.00-----------------------------------------------------------------------
................................................................AGTGATGAGATTCTAACTGAT.....................................................................................................................................................................2111.001.00---------------------------------------------------------1.00----------------------------------------------------------------------
................................................................AGTGATGAGATTCTAACTGATCAT..................................................................................................................................................................2411.001.00-------------------------------1.00------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGACC....................................................................................................................................................................2511.004.00---------------1.00----------------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATTA...................................................................................................................................................................2711.005.00-----------1.00--------------------------------------------------------------------------------------------------------------------
.................................................................................................................CAGAGGACTGAGGAATAGGTAATGAGGCC............................................................................................................2911.001.00-------------------------------------------------1.00------------------------------------------------------------------------------
..............................................................................AACTGATCATGGGAAGGCTGGCCC....................................................................................................................................................2411.001.00----------------------------------1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................AGGTGAGGTGGAAACAGGCAAAAGGA.................................................................................2611.001.00--------------------------------------------------------1.00-----------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATCATGG................................................................................................................................................................3011.001.00------------------------------1.00-------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATCAAAAA...............................................................................................................................................................3111.00137.00----------------------------------------------------------------------------------------------------------------------------1.00---
.......................................................................................................................................................TGGAAACAGGCAAAAATTG................................................................................191.000.00-----------------------------------------------1.00--------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATCATAAA...............................................................................................................................................................3111.0061.00-------------------------------------------------------------------------------------------------------1.00------------------------
.................................................................................................................CAGAGGACTGAGGAATAGGTA....................................................................................................................2111.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAACTGTTC....................................................................................................................................................................2511.005.00-1.00------------------------------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAAC.........................................................................................................................................................................2111.001.00------1.00-------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................ATGAGGCCAAGGTGAACCG.................................................................................................191.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------
...................................................................................................................GAGGACTGAGGAATAGGTAATGAGGCCA...........................................................................................................2811.001.00-------------------------1.00------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATCAAG.................................................................................................................................................................2911.00137.00---1.00----------------------------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGATCATA.................................................................................................................................................................2911.0061.00-----------------------------1.00--------------------------------------------------------------------------------------------------
....GGTTTAGGAAATTGAGGCTTTGAGAGGTG.........................................................................................................................................................................................................................2911.001.00-------------------------1.00------------------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTCTAACTGCTCA...................................................................................................................................................................2711.004.00---1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................GGAAGTGATGAGATTCTAATT........................................................................................................................................................................211.000.00----------------------------------1.00---------------------------------------------------------------------------------------------
................................................................AGTGATGAGATTCTAACTGATCATG.................................................................................................................................................................2511.001.00---------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................GAGGACTGAGGAATAGGTAAT..................................................................................................................2111.001.00-----------------------------------------------------------------------1.00--------------------------------------------------------
................................................................AGTGATGAGATTCTAACTGATCA...................................................................................................................................................................2311.001.00-------------------------------------------------------1.00------------------------------------------------------------------------
.............................................................................................................................................................CAGGCAAAAGGATGAGCTCCTCACCCC..................................................................2711.001.00--------------------------------------------1.00-----------------------------------------------------------------------------------
...................................................................................................................GAGGACTGAGGAATAGGTAATGAGGC.............................................................................................................2611.001.00--------------------------------------------------------------1.00-----------------------------------------------------------------
...CGGTTTAGGAAATTGAGGCTTTGAGAGGG..........................................................................................................................................................................................................................291.000.00--------------------------------------------------------------------------------------------------1.00-----------------------------
............................................................AGGAAGTGATGAGATTCAC...........................................................................................................................................................................1921.000.50----------------------------------1.00---------------------------------------------------------------------------------------------
............................................................AGGAAGTGATGAGATTC.............................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------------------------------------0.50
........................................................................................................GAGAGCACCCAGAGGACTGAG.............................................................................................................................2120.500.50-------------------------0.50------------------------------------------------------------------------------------------------------

Antisense strand
TCACGGTTTAGGAAATTGAGGCTTTGAGAGGTGAAATCGCTTGCCTTAGAGTCCTGGGCCAGGAAGTGATGAGATTCTAACTGATCATGGGAAGGCTGGCCCTGGAGAGCACCCAGAGGACTGAGGAATAGGTAATGAGGCCAAGGTGAGGTGGAAACAGGCAAAAGGATGAGCTCCTCACCCCCCGTGGGCCTGCTTAGTCTCCCCTCATCAGGACGCCTCCTTCCTGTACACGGAGCCCCTGGGCCGG
..........................................................((.....(((((.((.......)).))))).)).((((.((((((((......(((((....))).))....(((......)))..(((((((((....)).((..........)).)))))))..))).))))).))))....................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037931(GSM510469)
293GFP. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM416733(GSM416733)
HEK293. (cell line)
SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR029130(GSM416759)
DLD2. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR038859(GSM458542)
MM386. (cell line)
SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR189784SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038854(GSM458537)
MM653. (cell line)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR029124(GSM416753)
HeLa. (hela)
TAX577580(Rovira)
total RNA. (breast)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
TAX577453(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................................................................................CGCCTCCTTCCTGTAACTG............... 191.000.00-----------------------------------------------1.00--------------------------------------------------------------------------------
..........................................GCCTTAGAGTCCTGGCC............................................................................................................................................................................................... 171.000.00---------------------------------------------------------------------------------------------------------------------------1.00----
......................................GCTTGCCTTAGAGTCCAGC................................................................................................................................................................................................. 191.000.00------------------------------------------------------------------------------------------------------1.00-------------------------
......................................................................................................................................................................................................................GACGCCTCCTTCCTGAGAA................. 191.000.00----------------------------------1.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................AAGGATGAGCTCCTCACCGAT................................................................. 211.000.00----------------------------------------------------------------------------------------------1.00---------------------------------
.....................ATTTCACCTCTCAAAG..................................................................................................................................................................................................................... 1670.140.14-----------------------------------------------0.14--------------------------------------------------------------------------------