ID: uc004bwg.2_intron_8_0_chr9_131600417_r.3p
GENE: (4)
chr9:131600367-131600616-


(5)
B-CELL 		(5)
BRAIN 		(12)
CELL-LINE 		(3)
HEART 		(3)
HELA 		(7)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
AGTTTCTTTGGGGAGCTGCTGGGTCAGGAGATAGACCCGCTCAGGAATGTGCTGGTGACTGTTGGTGGCTATGGGGCCCTGTTCACAGCCTTCCAGGCCCTGGTGGACGAAGGAGACGAGGTGAGTGGGCAAGACTTGGGCTGAGTGGGACTGAGAGGTCAGGGCCATGCTGACTCCAGCTGATTTGACCCTTATATCAGGTCATCATCATCGAACCCTTTTTTGACTGCTACGAGCCCATGACAATGAT
...............................................(((.((..((.(((..((.((((.(((((..(((....)))..)))))))))))..))).))..))..)))....................................................................................................................................
............................................45.............................................................................124............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................TGGACGAAGGAGACGAG..................................................................................................................................17133.0033.0015.00--4.002.001.002.00-----1.00---1.00-----1.00---------1.00-1.00-1.001.00-1.001.00----
......................................................................................................GTGGACGAAGGAGACGAG..................................................................................................................................1817.007.00----1.00--1.00-1.00----1.00-----------1.00-1.00------1.00---------
...........................................GGAATGTGCTGGTGACTGTTGGTGG......................................................................................................................................................................................2513.003.00--3.00------------------------------------------
.................................................TGCTGGTGACTGTTGGTGGCT....................................................................................................................................................................................2112.002.00-----1.00------------------------------------1.00--
.......................................................................................................................................TTGGGCTGAGTGGGACT..................................................................................................1712.002.00--2.00------------------------------------------
...............................................................................................................................................AGTGGGACTGAGAGGGAGC........................................................................................192.000.00--------2.00------------------------------------
.............................................................................................................................................................................................................................TTTGACTGCTACGAGCCCATGAC......2311.001.00----------1.00----------------------------------
.............................................AATGTGCTGGTGACTGTTGGTGGC.....................................................................................................................................................................................2411.001.00-1.00-------------------------------------------
...............................................................................................GGCCCTGGTGGACGAAGGAGA......................................................................................................................................2111.001.00---------------------1.00-----------------------
...................................................CTGGTGACTGTTGGTGGCTATGGGGCCC...........................................................................................................................................................................2811.001.00-------------1.00-------------------------------
..........................................................................................................................................................................................................................TTTTTTGACTGCTACGAGCCCATA........241.000.00---------1.00-----------------------------------
..............................................................................................................................................................................................................................TTGACTGCTACGAGCCCAT.........1911.001.00------------------1.00--------------------------
...............................................................................................................................................AGTGGGACTGAGAGGTCAGGGCC....................................................................................2311.001.00-----------------------1.00---------------------
........................................TCAGGAATGTGCTGGTGACTGTTGG.........................................................................................................................................................................................2511.001.00------------------------------1.00--------------
.......................................................................................................TGGACGAAGGAGACGAGGTCATC............................................................................................................................231.000.00-1.00-------------------------------------------
............................................GAATGTGCTGGTGACTGTTGG.........................................................................................................................................................................................2111.001.00---------------------------1.00-----------------
.......................................................................................................................................................................................................................CCCTTTTTTGACTGCTACGAGCCCA..........2511.001.00-----1.00---------------------------------------
.................................................TGCTGGTGACTGTTGGTGGCTATGGGGGG............................................................................................................................................................................291.000.00--------------------------------------1.00------
................................................GTGCTGGTGACTGTTGGTTGCT....................................................................................................................................................................................221.000.00-----------------------------------------1.00---
...................................................CTGGTGACTGTTGGTGGCT....................................................................................................................................................................................1911.001.00---------------------------------1.00-----------
.................................................................................................CCCTGGTGGACGAAGGAGACG....................................................................................................................................2111.001.00--1.00------------------------------------------
..............................................................................................AGGCCCTGGTGGACGAAGGAGACGAGGTCAT.............................................................................................................................311.000.00-1.00-------------------------------------------
.................................................................................................................................................................................................................................ACTGCTACGAGCCCATCTTG.....201.000.00------------------------1.00--------------------
..................................................GCTGGTGACTGTTGGTGGCTATGGGGCCCT..........................................................................................................................................................................3011.001.00-1.00-------------------------------------------
....................................................................................ACAGCCTTCCAGGCCCTAAC..................................................................................................................................................201.000.00-------------------------------1.00-------------
..................................................GCTGGTGACTGTTGGTGGCT....................................................................................................................................................................................2011.001.00---------------1.00-----------------------------
................................................GTGCTGGTGACTGTTGGTGGCTATT.................................................................................................................................................................................251.000.00-------1.00-------------------------------------
...........................................................................................TCCAGGCCCTGGTGGACGAAGGAGACGAGGTC...............................................................................................................................321.000.00-1.00-------------------------------------------
........................................................................................................................GTGAGTGGGCAAGACTTGGGCTGAGTGGGACTGAGAGGTCAGGGCCATGCTGACTCCAGCTGATTTGACCCTTATATC....................................................7811.001.00-----------------------------1.00---------------
..........................................AGGAATGTGCTGGTGACTGTTGGTGG......................................................................................................................................................................................2611.001.00-------------------------1.00-------------------
......................................................................................................GTGGACGAAGGAGACGAGG.................................................................................................................................1911.001.00-1.00-------------------------------------------
...........................................GGAATGTGCTGGTGACTGTTGGTGGCTATGGG...............................................................................................................................................................................3211.001.00-1.00-------------------------------------------
.........................................................................................................................................................................................................................CTTTTTTGACTGCTACGAGCCCACGG.......261.000.00-----------------1.00---------------------------
....................................................................................................................................................................................................................................GCTACGAGCCCATGAC......1611.001.00-------------------1.00-------------------------
..................................................................................................................................AAGACTTGGGCTGAGTGGGCGA..................................................................................................221.000.00--------------------1.00------------------------
..............................................................................................................................................................................................................................TTGACTGCTACGAGCCCA..........1811.001.00-----------1.00---------------------------------
...............................................TGTGCTGGTGACTGTTGGTGGC.....................................................................................................................................................................................2211.001.00-1.00-------------------------------------------
............................................................................................................................................................................................................................TTTTGACTGCTACGAGCCCAT.........2111.001.00-----------1.00---------------------------------
.....................................................GGTGACTGTTGGTGGCTATGG................................................................................................................................................................................2111.001.00-1.00-------------------------------------------
....................................................................................................TGGTGGACGAAGGAGACGAG..................................................................................................................................2011.001.00-1.00-------------------------------------------
............................................GAATGTGCTGGTGACTGTTGGTGG......................................................................................................................................................................................2411.001.00--1.00------------------------------------------
......................................................GTGACTGTTGGTGGCT....................................................................................................................................................................................1640.250.25--------------------------------------------0.25

Antisense strand
AGTTTCTTTGGGGAGCTGCTGGGTCAGGAGATAGACCCGCTCAGGAATGTGCTGGTGACTGTTGGTGGCTATGGGGCCCTGTTCACAGCCTTCCAGGCCCTGGTGGACGAAGGAGACGAGGTGAGTGGGCAAGACTTGGGCTGAGTGGGACTGAGAGGTCAGGGCCATGCTGACTCCAGCTGATTTGACCCTTATATCAGGTCATCATCATCGAACCCTTTTTTGACTGCTACGAGCCCATGACAATGAT
...............................................(((.((..((.(((..((.((((.(((((..(((....)))..)))))))))))..))).))..))..)))....................................................................................................................................
............................................45.............................................................................124............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
...................................CCCGCTCAGGAATGTGCTGACC................................................................................................................................................................................................. 221.000.00----------1.00----------------------------------
...........................................................................AAGGCTGTGAACAGGGC.............................................................................................................................................................. 1720.500.50-------------------------------------------0.50-