ID: uc004bss.2_intron_2_0_chr9_130674960_r.5p
GENE: (3)
chr9:130676735-130676984-


(3)
B-CELL
(13)
CELL-LINE
(2)
CERVIX
(2)
HEART
(1)
SKIN

Sense strand
TGCCGGGACCCCTGCACTTCAGTGGATATAGCAGTGTGCCAGATGGGAAGGTGAGTGGGCCAGGCAATGCATCCGGGGTGGGTAGTGAGAGCTGGGCTTGTCCCAAACCGGACCTTGAGCTTGGCCCCTCTACTCACCAGCCATGTGATCCTGGCCAATCACATCACCTCTCTGAGCCCTAGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTTCTGTTTCTCCCAGGCTAGAGT
...............................................................................................................................................((((((........))))))..........(((((...)))))................................................................
...............................................................................................................................................144............................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532875(GSM532875)
G547N. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAG...............................3528.000.00-13.0012.00-2.001.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC.................................3320.000.009.005.003.001.00-1.001.00--------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTTC.......................................3113.000.0010.00--3.00-----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAG.................................3310.000.00-5.003.00-1.001.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTC..................................3210.000.00-2.003.003.001.001.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAT...............................359.000.00-6.002.00--1.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCT.................................339.000.00-3.004.00--1.001.00--------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTC..........................................288.000.006.00--2.00-----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC...............................357.000.00-4.003.00------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT...............................355.000.00-4.001.00------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG...............................355.000.00--5.00------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.................................335.000.00-3.001.00--1.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCG.................................335.000.00-1.004.00------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAG...............................355.000.00-1.003.00-1.00----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTGTC...............................................235.000.005.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTATC...............................................235.000.004.00--1.00-----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTC...............................354.000.00--1.00-1.002.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATC.................................334.000.001.001.001.00-1.00----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAA.................................334.000.00-1.002.00-1.00----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC..................................324.000.003.001.00-------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG.................................334.000.00-3.00--1.00----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTT...............................354.000.00-3.00--1.00----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAT...............................354.000.00--2.00-2.00----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTATC.........................................294.000.004.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTATC.............................................253.000.003.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTCC.......................................313.000.003.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTCCCC..............................................243.000.003.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTATC..........................................283.000.003.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTC.....................................333.000.001.00--2.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTCTCC............................................263.000.002.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTCCC..............................................243.000.003.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACC.................................333.000.00--1.00--2.00---------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGG................................342.000.00-1.001.00------------------
.....................GTGGATATAGCAGTGTGCC..................................................................................................................................................................................................................1912.002.00---------1.00---------1.00-
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTCCC.......................................312.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTCA..........................................282.000.00---2.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTGG........................................302.000.001.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTCCC...........................................272.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTCTCC..........................................282.000.001.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTGGC.............................................252.000.001.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTCTC................................................222.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTCCCC............................................262.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTGTC.............................................252.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTATC.................................................212.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTACC..........................................282.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTGGCC............................................262.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTCTTC............................................262.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTCCTT............................................262.000.001.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTGGCC.............................................252.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTACTT.................................................212.000.00------2.00--------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGG.................................332.000.00--2.00------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCC.................................332.000.001.00--1.00-----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAC...............................352.000.00-1.00---1.00---------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTCTCC.............................................252.000.002.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCC...............................352.000.00-1.001.00------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTCCCC..........................................292.000.001.00--1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTCTCC............................................272.000.002.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTCCCC..............................................252.000.001.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTACC........................................302.000.001.00--1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTGCC...........................................272.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTCCCC.............................................252.000.002.00--------------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTC..................................332.000.002.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGC.................................332.000.002.00--------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTTTTTCC.......................................302.000.002.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTCTTC.......................................312.000.00---2.00-----------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG...............................352.000.00-1.001.00------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTGTC...........................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTGGTC............................................261.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTGCT..............................................241.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGC.................................331.000.00-----1.00---------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG.................................341.000.00----1.00----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTACC...........................................271.000.001.00--------------------
....................................................................................................................................................TCCTGGCCAATCACATCACCTCTC..............................................................................2411.001.00------------1.00--------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTGGCC.........................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTCACC......................................321.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTCCCC................................................231.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTAAG........................................301.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTACC...............................................231.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTCCC............................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTAG............................................261.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTATTT...........................................271.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTACA..............................................251.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTCGGA...............................................241.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTAT.........................................291.000.001.00--------------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC.................................341.000.00----1.00----------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTCTGG.........................................281.000.00------1.00--------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTAG...........................................271.000.001.00--------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTGTT.............................................241.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTCTCC..............................................241.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTCTTC.............................................251.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTAGC.........................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTCC........................................301.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTCTC.......................................311.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTCTCC.........................................291.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTAG..........................................281.000.001.00--------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTTTTCAGG.......................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTAGAG..............................................241.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTACC.........................................291.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTGG..............................................251.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTCCC...........................................281.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTTCAG.....................................331.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTAGC......................................321.000.001.00--------------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGG.................................341.000.00--1.00------------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG.................................341.000.00--1.00------------------
.........................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGC...............................341.000.00--1.00------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTATT.........................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTCACC..........................................281.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTGGA...............................................231.000.00---1.00-----------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAA.................................341.000.00--1.00------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTAGC..........................................281.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTAAC.........................................291.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTGGG.............................................261.000.00---1.00-----------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTACTG...........................................261.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTCCTC................................................231.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTAC............................................261.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTCTGC................................................221.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTGGG.......................................311.000.001.00--------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTTTTTCCC......................................311.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGC.................................331.000.00-1.00-------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTTTTCAC........................................281.000.00-1.00-------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTTTTCCCC.......................................321.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTGTC..............................................241.000.001.00--------------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAG.................................341.000.00-1.00-------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTCCC............................................261.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTAGAG.......................................311.000.001.00--------------------
.........................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACATT.............................361.000.00--1.00------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTGGA.......................................311.000.00---1.00-----------------
..............................................................GGCAATGCATCCGGGGTGGGTAGTGAGAGCTG............................................................................................................................................................3211.001.00----------------1.00----
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTTATC.....................................331.000.001.00--------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTCGCC..........................................261.000.001.00--------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTTTTCGAG.......................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTTAG......................................321.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTCCC.................................................211.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTATA..........................................281.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTCGGC............................................261.000.001.00--------------------
.........................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCA..............................351.000.00-1.00-------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTCCCT.........................................281.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTT.................................331.000.00-----1.00---------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTAAC...........................................271.000.001.00--------------------
..................TCAGTGGATATAGCAGTG......................................................................................................................................................................................................................1811.001.00--------------------1.00
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTCGAG.........................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTCAG..........................................281.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTCTCC..............................................251.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTCCCC...........................................271.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTCC...............................................241.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTG.................................331.000.00-1.00-------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTCACC.........................................291.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTTTTCC.........................................301.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTGGC...............................................231.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTGACC.............................................251.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTGTGC..........................................281.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTCTTC...............................................231.000.001.00--------------------
.......................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.................................341.000.00----1.00----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTGCC..........................................281.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG.................................331.000.00-1.00-------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTGTGC..............................................241.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTTTCCC.........................................301.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTTTCTCC........................................311.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTCG...........................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTGAGG..........................................281.000.001.00--------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAC...................................331.000.00-1.00-------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTGGAC............................................261.000.001.00--------------------
....................AGTGGATATAGCAGTGTG....................................................................................................................................................................................................................1811.001.00--------------1.00------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTAGC...........................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTATGG.........................................291.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTCATC...........................................271.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCG.................................331.000.00--1.00------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTTTTTTAG......................................311.000.00--1.00------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTCCCC............................................271.000.001.00--------------------
.........................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTAC.............................361.000.00----1.00----------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTCCC............................................251.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTGTGC...............................................241.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTGGC..............................................251.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTCA............................................261.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTCGGG...........................................271.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTGGA.............................................261.000.001.00--------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTACAG............................................251.000.001.00--------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTTTTTTTCCAT....................................321.000.00------1.00--------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTCTTG.........................................291.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTCTC...........................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTGCC.............................................251.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTATCT..........................................281.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTATC...........................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTGTA...............................................231.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTCTC.........................................291.000.001.00--------------------
................CTTCAGTGGATATAGCAGTGTG....................................................................................................................................................................................................................2211.001.00-----------------1.00---
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTCTCC.............................................261.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTATCC...........................................271.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTGTC.......................................311.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTGGA..........................................281.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTCGC.......................................311.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTCA..............................................241.000.001.00--------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTATTT...........................................261.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTCGG.................................................221.000.00---1.00-----------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTCCCC...................................................201.000.001.00--------------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTTCCCC........................................291.000.001.00--------------------
............................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTTT............................341.000.00------1.00--------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTACC.................................................211.000.001.00--------------------
......................................................................................................................................................................................GTTCTTTTTTTTTTTTTTTTTTTTTTTACTG.....................................311.000.00------1.00--------------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTCAGG.........................................281.000.001.00--------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTTTTTTTCCC......................................331.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCA.................................331.000.00--1.00------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTTTCATG.....................................331.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTACC.............................................251.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTGG...........................................271.000.001.00--------------------
........................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAC.................................331.000.00-1.00-------------------
...................................................................................................................................................................................TAGGTTCTTTTTTTTTTTTTTTTTCC.............................................261.000.001.00--------------------
.....................GTGGATATAGCAGTGTG....................................................................................................................................................................................................................1711.001.00------------------1.00--
............................................................................................................................................................................................................TTTTTTTTTTTGAGACGGAGTCTTTCTGCG................301.000.00---1.00-----------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTCTTC................................................221.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTTTTCCT........................................301.000.001.00--------------------
....................................................................................................................................................................................AGGTTCTTTTTTTTTTTTTTTTTTATT...........................................271.000.00---1.00-----------------

Antisense strand
TGCCGGGACCCCTGCACTTCAGTGGATATAGCAGTGTGCCAGATGGGAAGGTGAGTGGGCCAGGCAATGCATCCGGGGTGGGTAGTGAGAGCTGGGCTTGTCCCAAACCGGACCTTGAGCTTGGCCCCTCTACTCACCAGCCATGTGATCCTGGCCAATCACATCACCTCTCTGAGCCCTAGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTTCTGTTTCTCCCAGGCTAGAGT
...............................................................................................................................................((((((........))))))..........(((((...)))))................................................................
...............................................................................................................................................144............................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR040034(GSM532919)
G001N. (cervix)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532875(GSM532875)
G547N. (cervix)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
.....................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAGAACC........................................ 2903.003.00-------3.00-------------
...................................................................TGCATCCGGGGTGGGTAA..................................................................................................................................................................... 181.000.00--------1.00------------
.............................................................................................................CTGGTGAGTAGAGGGGCCAAGCTCAAGGTCC.............................................................................................................. 3111.001.00---------------1.00-----
.............................................................................................................................CCCTCTACTCACCAGCCAC.......................................................................................................... 191.000.00-------------1.00-------
.....................................................................................................................................................................................GGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAA.................................... 331.000.00-----------1.00---------
....GGGACCCCTGCACTTCAA.................................................................................................................................................................................................................................... 181.000.00--------1.00------------
...............................................................................................................................................................CACATCACCTCTCTGATTC........................................................................ 191.000.00----------1.00----------
..............................................................................................................................TGGCTGGTGAGTAGAGG........................................................................................................... 1720.500.50------0.50--------------