ID: uc004bsg.1_intron_8_0_chr9_130570591_f
GENE: FPGS(9)
chr9:130570541-130570886+


(2)
AGO2.ip 		(4)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(22)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(4)
HELA 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
TESTES

Sense strand
AACCTGAAGGTCCCCTGGCAGTGCTGAGGGACCGAGCCCAGCAGATCTCAGTAAGTCTGATTGGAATGGGGCAGCGGCAGGGTGGGTTTGTGTCCCTCCTGTTTGAGGAGGCACTGCATCCTCTGGGGCCTCAGTTTGCCCATCTGTGCAGTGAGGACGCTGGGCCAGCTGCCAGGCCTGCTGGAACACATCTCAGTTCTGGGAGCAGGGCTTGGTGGCTGGGGGAGGGGAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAGTGTCCTCTATACCTGTGTCCGATGCTGGAGGCCCTCGAGGAAGGGGGGCC
................................................................................................................................................................................................((((..((....(((...(((.....((.....))....))).))).))..))))...((((......))))..................................................................................
.............................................................................................................................................................................................190........................................................................265...............................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAG..................................................72166.0066.0049.0010.00--4.00----3.00---------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGG.....................................................................................23111.0011.00----------3.00-------1.002.00---1.00--1.001.00-----------------------1.00-1.00-------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAGT.................................................7319.009.00-9.00-----------------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTG....................................................................................................2216.006.00---6.00---------------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGGT...................................................................................2514.002.00------------1.00-----------------------1.00--1.00--------------1.00------
.................................................................................................................................................................................................................................AGGGGAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAG..................................................7114.004.00-4.00-----------------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAG..........................................................................................1813.003.00-------------2.00--------------1.00--------------------------------
.....................................................................................................................................................................................................................................GAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAG..................................................6713.003.00-3.00-----------------------------------------------------------
.................................................................................................................................................................................................................................AGGGGAGAGATGCAAGGGCTG....................................................................................................2112.002.00----------------1.00------------------------1.00-------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGA...................................................................................................2312.002.00--1.00-------------------------------1.00--------------------------
.............................................................................................................................................................................................................................................CAAGGGCTGACGTGGTCAGGGAG......................................................................................2312.002.00---2.00---------------------------------------------------------
.................................................................................................................................................................................................................................AGGGGAGAGATGCAAGGGCTGAT..................................................................................................232.000.00--------------------1.00--------------1.00-------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAG......................................................................................2212.002.00-------1.00-------------------------1.00---------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGT................................................................................................2612.002.00--2.00----------------------------------------------------------
........................................................................................................................................................................................................................GGCTGGGGGAGGGGAGAGATGCAAGGGC......................................................................................................2812.002.00-----------2.00-------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGT.....................................................................................2312.002.00--------------1.00---------------1.00------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGG....................................................................................2412.002.00--------------------------------1.00-------------1.00--------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGC......................................................................................................2012.002.00--1.00-----1.00----------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCT.....................................................................................................2112.002.00--2.00----------------------------------------------------------
.......................................................................................................................................................TGAGGACGCTGGGCCAGCTGCCAGGCCTGCC....................................................................................................................................................................312.000.00-----2.00-------------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGG.......................................................................................................1912.002.00--1.00---1.00------------------------------------------------------
..................................................................................................................................................................................................AGTTCTGGGAGCAGGGA.......................................................................................................................................171.000.00-----1.00-------------------------------------------------------
........................TGAGGGACCGAGCCCAGCAGATCTC.........................................................................................................................................................................................................................................................................................................2511.001.00------1.00------------------------------------------------------
....................................................................................................................................................................................................................TGGTGGCTGGGGGAGGGGGCAG................................................................................................................221.000.00-----1.00-------------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCC.....................................................................................................2111.002.00-----------------------------1.00-------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGA....................................................................................2411.0011.00--------------------------------------1.00----------------------
..................................................................................................................................................................................................................................................................................................................................GGAGGCCCTCGAGGAAGGG.....1911.001.00-------------------------1.00-----------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGT...................................................................................................2311.006.00--------1.00----------------------------------------------------
.................................................................................................................................................................................................................................AGGGGAGAGATGCAAGGGCTGT...................................................................................................2211.002.00----------------------------------------------------1.00--------
.............................................................................................................................................................................................................................................CAAGGGCTGACGTGGT.............................................................................................1611.001.00------------1.00------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGTA...................................................................................2511.0011.00-----------------------------------------------1.00-------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAC..................................................721.000.00-1.00-----------------------------------------------------------
.................................................................................................................................................................................................................................AGGGGAGAGATGCAAGGGC......................................................................................................1911.001.00--1.00----------------------------------------------------------
...............TGGCAGTGCTGAGGGACCGAGCCCAGCAG..............................................................................................................................................................................................................................................................................................................2911.001.00--------1.00----------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGTCAGGG........................................................................................3411.001.00--1.00----------------------------------------------------------
..................................................................................................................................................TGCAGTGAGGACGCTGGGCCAGCCGCC.............................................................................................................................................................................271.000.00-----------------1.00-------------------------------------------
..................................................GTAAGTCTGATTGGAATGGGGCAGC...............................................................................................................................................................................................................................................................................2511.001.00--------------------------------------------1.00----------------
.............................................................................................................................................................................................................................................CAAGGGCTGACGTGGTCAGGGAGGGGAT.................................................................................2811.001.00----------------1.00--------------------------------------------
.....................................................................................................................................................................................................................................................................................................................TGTGTCCGATGCTGGAGG...................1811.001.00-------------------------------1.00-----------------------------
........................................................CTGATTGGAATGGGGCAGCGGC............................................................................................................................................................................................................................................................................2211.001.00---------------------1.00---------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGGATA.................................................................................2711.002.00------------------------1.00------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGAA...................................................................................2511.0011.00---------------1.00---------------------------------------------
.............................................................................................................................................................................................................................................................................................................TCTATACCTGTGTCCGATGCTGGA.....................2411.001.00------1.00------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................GTCCGATGCTGGAGGCCCTCGAGGAAG.......2711.001.00---------------1.00---------------------------------------------
.................................................................................................................................................................................................................................AGGGGAGAGATGCAAGGGCTGAC..................................................................................................2311.001.00--1.00----------------------------------------------------------
.....................................................................................................................................................................................................................................GAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCCAG..................................................671.000.00-1.00-----------------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGTCAG..........................................................................................3211.001.00--1.00----------------------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGTC............................................................................................3011.001.00--1.00----------------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGTT...................................................................................2511.0011.00-------1.00-----------------------------------------------------
............................................................TTGGAATGGGGCAGCGGCA...........................................................................................................................................................................................................................................................................1911.001.00------------------------------------------------1.00------------
.............................................................................................................................................................................................................................................CAAGGGCTGACGTGGTCAGGGAGGGTTT.................................................................................2811.001.00-------------------------------------------1.00-----------------
..................................................GTAAGTCTGATTGGAATGGGGCAGCGGCA...........................................................................................................................................................................................................................................................................2911.001.00--------------1.00----------------------------------------------
................................................................................................................................................................................................................................GAGGGGAGAGATGCAAGGGCTGACGTGGT.............................................................................................2911.001.00--1.00----------------------------------------------------------
.......................................................................................................................................................TGAGGACGCTGGGCCAGCTGCCAGGCCCGC.....................................................................................................................................................................301.000.00-----------------1.00-------------------------------------------
...................................................................................................................................................................................................................................................................................................................................GAGGCCCTCGAGGAAGTAAA...201.000.00-----------1.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................TCGAGGAAGGGGGGCAGG181.000.00---------------------------------------------1.00---------------
..............................................................................................................................................TCTGTGCAGTGAGGAAAA..........................................................................................................................................................................................181.000.00-------------------------------------1.00-----------------------
.............................................................................................................................................................................................................................................CAAGGGCTGACGTGGTCAGGGAGGG....................................................................................2511.001.00----------------------------------------1.00--------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGGAGGGAT..................................................................................2611.002.00-------1.00-----------------------------------------------------
..............................................................................................................................................................................................................................................AAGGGCTGACGTGGTCAGGT........................................................................................201.000.00--------------------------------------------------1.00----------
...............TGGCAGTGCTGAGGGAC..........................................................................................................................................................................................................................................................................................................................1750.400.40------0.20-------------0.20----------------------------------------
....................................................................................................................................................................................................................TGGTGGCTGGGGGAGGG.....................................................................................................................1760.170.17------------0.17------------------------------------------------
.........................................................................................................AGGAGGCACTGCATC..................................................................................................................................................................................................................................1560.170.17--------------------------------------------------------0.17----
............................................................................GCAGGGTGGGTTTGT...............................................................................................................................................................................................................................................................1560.170.17---------------------------------------------------------0.17---
...................................................................................................................................................................................................................TTGGTGGCTGGGGGAG.......................................................................................................................1670.140.14----------------------------------------------------------0.14--
...........................................................................................................................................................................................................................TGGGGGAGGGGAGAGAT..............................................................................................................1790.110.11------------------------------------------------------------0.11
................GGCAGTGCTGAGGGACC.........................................................................................................................................................................................................................................................................................................................1790.110.11-----------------------------------------------------------0.11-

Antisense strand
AACCTGAAGGTCCCCTGGCAGTGCTGAGGGACCGAGCCCAGCAGATCTCAGTAAGTCTGATTGGAATGGGGCAGCGGCAGGGTGGGTTTGTGTCCCTCCTGTTTGAGGAGGCACTGCATCCTCTGGGGCCTCAGTTTGCCCATCTGTGCAGTGAGGACGCTGGGCCAGCTGCCAGGCCTGCTGGAACACATCTCAGTTCTGGGAGCAGGGCTTGGTGGCTGGGGGAGGGGAGAGATGCAAGGGCTGACGTGGTCAGGGAGGGCCTCTGCTGACCCGCTCCTGCCTGTCTCCCCTAGTGTCCTCTATACCTGTGTCCGATGCTGGAGGCCCTCGAGGAAGGGGGGCC
................................................................................................................................................................................................((((..((....(((...(((.....((.....))....))).))).))..))))...((((......))))..................................................................................
.............................................................................................................................................................................................190........................................................................265...............................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		TAX577589(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)
................................................................................................................................CCTCAGTTTGCCCATCTA........................................................................................................................................................................................................ 181.000.00------------------------------------------1.00------------------
......................................................................GCAGCGGCAGGGTGGGTCA................................................................................................................................................................................................................................................................. 191.000.00----------------------1.00--------------------------------------
...........................................................................................................................................................................................................................................................................CAGGAGCGGGTCAGC................................................................ 1540.250.25-------------------------------------------------------0.25-----