ID: uc004brh.2_intron_8_0_chr9_130280221_r.3p
GENE: (5)
chr9:130280171-130280420-


(1)
AGO2.ip 		(3)
BRAIN 		(4)
BREAST 		(10)
CELL-LINE 		(3)
CERVIX 		(7)
HELA 		(3)
LIVER 		(2)
OTHER 		(17)
SKIN

Sense strand
TTGGTGGTGGGGTCATTACTGCTTTTGCCTATCAGATACAACCATGACTGCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGCCATGTGTGTGGGGGGGGTTTTGGTCAGTTCTCAGTTGGTCTTGGTAGAGGCCACTGGGCCATCTGCTGACCTCCTCTCTCCCTCCGTCTCCTGGGCAGGAATCCCTGAGGACTCCAAGGTAGAGGGCCCTGCGTTCACAGATGCCATC
...............................................................................................................((((((((....(((((((.(((((.(((((((....))))))))))))......)))))))....))))))))..(((.....)))....................................................
........................................................................................................105............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..................................................CTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGC........................................................................................................................................................48118.0018.004.009.005.00-----------------------------------------------
..................................................CTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGCCATGTGTGTGGGGGGGGT..................................................................................................................................70113.0013.0011.00-1.00-------------1.00---------------------------------
..................................................CTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGCCATGTGTG............................................................................................................................................6016.006.006.00-------------------------------------------------
..................................................CTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTG.........................................................................................................................................................4713.003.00-1.001.00----------------------------------------1.00------
.................................................GCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGC........................................................................................................................................................4912.002.00-2.00------------------------------------------------
..............................................................................................................................................................................................................CTGAGGACTCCAAGGTAGAG........................2012.002.00------------1.00---------------------------------1.00---
...................................................................GTGAGGGTCCCAGCTGCCCCTCCTGAGGT..........................................................................................................................................................2912.002.00------2.00-------------------------------------------
........................................................................................................................................................................................................................CAAGGTAGAGGGCCCTGCGT..............2011.001.00----------------------------------1.00---------------
.....................................................................................................................................................................................................................CTCCAAGGTAGAGGGCCCTGC................2111.001.00--------1.00-----------------------------------------
................................................................................................................................................................................................................................AGGGCCCTGCGTTCACAGATGC....2211.001.00--------------------------------------------1.00-----
.........................................................................................................................................................................................................................AAGGTAGAGGGCCCTGCGTTCACAGATG.....2811.001.00----1.00---------------------------------------------
............................................................................................................................................................................CTCCTCTCTCCCTCCGTCTCCTGG......................................................2411.001.00----------------------1.00---------------------------
............................................................................................................................................................................................................................GTAGAGGGCCCTGCGTTCACAGATGCC...2711.001.00--------------------------------------1.00-----------
.............................................................................................................GTGGGGGGGGTTTTGGACCG.........................................................................................................................201.000.00-------------------------1.00------------------------
.......................................................................................................................................................................................................................CCAAGGTAGAGGGCCCTGCGTT.............2211.001.00-----------1.00--------------------------------------
..................................................CTCTGATGACGAGGAAAGTGAGG.................................................................................................................................................................................2311.001.00-----------------------1.00--------------------------
...............................................................................................................................................................................................................TGAGGACTCCAAGGTAGAGGGCCCTGC................2711.001.00----1.00---------------------------------------------
.......................................................................................................................................................................................................GGAATCCCTGAGGACTCCCAG..............................211.000.00--------------------1.00-----------------------------
..................................................CTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGCCATGTGTGTGGGGGGGGGT.................................................................................................................................711.000.001.00-------------------------------------------------
................................................................................................................................................................................................................GAGGACTCCAAGGTAGAGGGC.....................2111.001.00----1.00---------------------------------------------
...............................................................................................................................................................................................................TGAGGACTCCAAGGTAGAGGGCC....................2311.001.00--------------------------1.00-----------------------
..........................................................................................................TGTGTGGGGGGGGTTCAGC.............................................................................................................................191.000.00------------------------------1.00-------------------
....................................................................................................................................................................................................................ACTCCAAGGTAGAGGGCCCTGCGT..............2411.001.00----------------------------1.00---------------------
.................................................GCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGCCATG................................................................................................................................................5711.001.00-1.00------------------------------------------------
....................................TACAACCATGACTGCCTGA...................................................................................................................................................................................................191.000.00---------------------------1.00----------------------
.............CATTACTGCTTTTGCCGCTC.........................................................................................................................................................................................................................201.000.00-----------------------------------1.00--------------
.................................................................................................................................................................................................................AGGACTCCAAGGTAGAGGGCCCTG.................2411.001.00-----1.00--------------------------------------------
.................................................GCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGG...........................................................................................................................................................4611.001.00--1.00-----------------------------------------------
.......................................................................................................................................................................................................................CCAAGGTAGAGGGCCCTGCGTTC............2311.001.00---------------------------------------1.00----------
.............................................................................................................................................................................................................CCTGAGGACTCCAAGGTAGAGG.......................2211.001.00-------------1.00------------------------------------
........................................................................................................................................................................................................................CAAGGTAGAGGGCCCTGCGTTCACAGA.......2711.001.00------------------------------------1.00-------------
..................................................CTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGC....................................................................................................................................................5211.001.00--1.00-----------------------------------------------
..............................................................................................................................................................................................................CTGAGGACTCCAAGGTAGAGGGCC....................2411.001.00----1.00---------------------------------------------
................................................................................................................................................................................................................GAGGACTCCAAGGTAGAGGGCCAA..................2411.001.00-----1.00--------------------------------------------
..............................................................................................................................................................................................................................AGAGGGCCCTGCGTTCACAG........2011.001.00---------1.00----------------------------------------
...............................................................................................................GGGGGGGGTTTTGGTAAC.........................................................................................................................181.000.00---------------------------------------------1.00----
................................................TGCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGC........................................................................................................................................................5011.001.00--1.00-----------------------------------------------
.......................................................................................................................................................................................................................CCAAGGTAGAGGGCCCTGCGTTT............2311.001.00-----------1.00--------------------------------------
...........................................................................................................................................................................................................TCCCTGAGGACTCCAAGGTAGAGGGCCCTGAA...............321.000.00-----1.00--------------------------------------------
...............................................CTGCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGG...........................................................................................................................................................4811.001.00--1.00-----------------------------------------------
................................................................................................................................................................................................................GAGGACTCCAAGGTAGAGG.......................1911.001.00------------------------1.00-------------------------
.............................................................................................................................................................................................................CCTGAGGACTCCAAGGTAG..........................1911.001.00---------1.00----------------------------------------
...................................................TCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGC........................................................................................................................................................4711.001.00-1.00------------------------------------------------
............................................................................................................................................................................................................CCCTGAGGACTCCAAGGTAGAG........................2211.001.00-----------------------------------------1.00--------
........................................................................................................................................................................................TCCGTCTCCTGGGCAGAA................................................181.000.00--------------1.00-----------------------------------
..........................................................................................................................................................................................................ATCCCTGAGGACTCCAAGGTAG..........................2211.001.00-----------------------------1.00--------------------
................................................................................................................................................................................................................GAGGACTCCAAGGTAGAGGGCC....................2211.001.00-------------1.00------------------------------------
..................................................CTCTGATGACGAGGAAAGTGA...................................................................................................................................................................................2111.001.00--------1.00-----------------------------------------
............................................................................................................................................................................................................................GTAGAGGGCCCTGCGTTCACAGATGC....2611.001.00---------------------1.00----------------------------
......................................................................................................................................................................................................................TCCAAGGTAGAGGGCCCTG.................1911.001.00----------------------------------------1.00---------
.....................................................................................................................................................................................................................CTCCAAGGTAGAGGGCCCTGCGT..............2311.001.00-------------------------------1.00------------------
...................................................................GTGAGGGTCCCAGCTGCCCCTCCTGAGGTG.........................................................................................................................................................3011.001.00------1.00-------------------------------------------
...........................................................................................................................................................................................................TCCCTGAGGACTCCAAGGTAGAGGG......................2511.001.00------------1.00-------------------------------------
..................................................................................................................................................................................TCTCCCTCCGTCTCCTG.......................................................1711.001.00---------------1.00----------------------------------
......................................CAACCATGACTGCTCTG...................................................................................................................................................................................................1720.500.50--------------0.50-----------------------------------
.................................................................................................................................................................................................................AGGACTCCAAGGTAGAGGGC.....................2020.500.50----0.50---------------------------------------------
................................................................................................................................................................................................................GAGGACTCCAAGGTAGAG........................1820.500.50-----------------------------------------------0.50--
.................................................................................................................................................................................................................AGGACTCCAAGGTAGAGGG......................1920.500.50------------------------------------------------0.50-
............................................................................................................................................................................................................CCCTGAGGACTCCAAG..............................1630.330.33---------------0.33----------------------------------
................................................................................................GCATGCCATGTGTGTG..........................................................................................................................................1640.250.25-------------------------------------------------0.25

Antisense strand
TTGGTGGTGGGGTCATTACTGCTTTTGCCTATCAGATACAACCATGACTGCTCTGATGACGAGGAAAGTGAGGGTCCCAGCTGCCCCTCCTGAGGTGCATGCCATGTGTGTGGGGGGGGTTTTGGTCAGTTCTCAGTTGGTCTTGGTAGAGGCCACTGGGCCATCTGCTGACCTCCTCTCTCCCTCCGTCTCCTGGGCAGGAATCCCTGAGGACTCCAAGGTAGAGGGCCCTGCGTTCACAGATGCCATC
...............................................................................................................((((((((....(((((((.(((((.(((((((....))))))))))))......)))))))....))))))))..(((.....)))....................................................
........................................................................................................105............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..GGTGGTGGGGTCATTCCCG..................................................................................................................................................................................................................................... 196.000.00---6.00----------------------------------------------
.................................................................................TGCCCCTCCTGAGGTCCA....................................................................................................................................................... 182.000.00----------2.00---------------------------------------
...............................................................................................................GGGGGGGGTTTTGGTCGAG........................................................................................................................ 192.000.00-------2.00------------------------------------------
...............................................................................................................GGGGGGGGTTTTGGTGAG......................................................................................................................... 181.000.00-----------------1.00--------------------------------
...............................................................................................................GACCAAAACCCCCCCC........................................................................................................................... 1611.001.00-------------------------------------1.00------------
.........................................................................................................................TTGGTCAGTTCTCAGGCTG.............................................................................................................. 191.000.00-----1.00--------------------------------------------
...............................................................................................................GGGGGGGGTTTTGGTCGAGT....................................................................................................................... 201.000.00------------------------------------------1.00-------
...................................................................................................................................................................TCTGCTGACCTCCTCAGC..................................................................... 181.000.00--------------------------------1.00-----------------
....................................................................................................................................................................................TCCCTCCGTCTCCTGACTT................................................... 191.000.00------------------1.00-------------------------------
...............................................................................................................GGGGGGGGTTTTGGTGA.......................................................................................................................... 171.000.00-------1.00------------------------------------------
....................................................................................................................................................................................TCCCTCCGTCTCCTGACAG................................................... 191.000.00-------------------1.00------------------------------
...............................................................................................................GGGGGGGGTTTTGGTGAGT........................................................................................................................ 191.000.00---------------------------------1.00----------------