ID: uc004bqx.1_intron_2_0_chr9_130210703_r.5p
GENE: (4)
chr9:130211360-130211609-


(1)
AGO1.ip 		(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(3)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(39)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAACAGTAAGTTGTCTTTTCCCTAGTTTGGTTTTGGTAATGGTTTGTGAGATGTTTGATATATGTGGCTGTGTTTTCCCTTAAAGGAAACCTGGGGTTGACATGGGTATTGGGTGTTGATATGGTTAGGGCTGCTAGAGCCAGGTAGTATGAAAAAGTGCCACGTATGCTGGGTGGCTCACACCTGTAATCCCAGCACTGGGAGG
...............................................................................................(((.(((((((..(((.(((((((..((((...(((...)))))))..))))))).)))...))))))))))......((((.....)))).((((...........))))............................................
......................................................................................87......................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR189783SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
...........................................................................................TGAGATGTTTGATATATTAG...........................................................................................................................................2062.000.0061.00----------------------------1.00-------------------------------------------------------
...........................................................................................TGAGATGTTTGATATTAG.............................................................................................................................................1819.000.0017.00---------2.00--------------------------------------------------------------------------
........................AAGAGACAGAAAGAAACAGAAAAATA........................................................................................................................................................................................................268.000.00-6.002.00----------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATAATAG...........................................................................................................................................208.000.008.00------------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATTA............................................................................................................................................196.000.006.00------------------------------------------------------------------------------------
........................AAGAGACAGAAAGAAACAGAAAATGAA.......................................................................................................................................................................................................275.000.00-5.00-----------------------------------------------------------------------------------
....................CACCAAGAGACAGAAAGAAAC.................................................................................................................................................................................................................2184.884.88-------2.25-----1.38--0.25--0.12-----------------------0.12-----0.25--0.12----------------0.120.12-0.12------------
.........................AGAGACAGAAAGAAACAGAAAAATA........................................................................................................................................................................................................253.000.00-1.001.00-1.00--------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATACTAG...........................................................................................................................................203.000.002.00--------1.00---------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATTAGG..........................................................................................................................................213.000.00--------1.00-----------------1.00---1.00------------------------------------------------------
.....................ACCAAGAGACAGAAAGAAACAGAAAAATA........................................................................................................................................................................................................293.000.00-3.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CTCACACCTGTAATCCCAGCACTGGGAGCC302.000.00---2.00---------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAA..................................................................................................................................................................................................................2671.431.43-1.29------------------------------------------0.14----------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAACA................................................................................................................................................................................................................2871.141.14--0.57-0.43-------------------------------------------0.14------------------------------------
...........................................................................................TGAGATGTTTGATATAATAC...........................................................................................................................................201.000.001.00------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TGCTGGGTGGCTCACACATTG..................211.000.001.00------------------------------------------------------------------------------------
..........................................................................................................................................................................................AGGTAGTATGAAAAAGT...............................................1711.001.00------------------1.00------------------------------------------------------------------
................................................................................................................................................................................................................................ACACCTGTAATCCCAGCACTGGGAGGAG281.000.00---1.00---------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATGAG...........................................................................................................................................201.000.001.00------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ACACCTGTAATCCCAGCACTGGGAGCC271.000.00---1.00---------------------------------------------------------------------------------
............................................................................................GAGATGTTTGATATATTAG...........................................................................................................................................191.000.001.00------------------------------------------------------------------------------------
........................................................................................................................................................................GTTAGGGCTGCTAGAGCC................................................................1811.001.00-----------------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................................................AATCCCAGCACTGGGAAAG191.000.001.00------------------------------------------------------------------------------------
.....................ACCAAGAGACAGAAAGAAACAGAAAAACAAA......................................................................................................................................................................................................311.000.00----------------------------1.00--------------------------------------------------------
.........................AGAGACAGAAAGAAACAGAATA...........................................................................................................................................................................................................221.000.00-1.00-----------------------------------------------------------------------------------
........................AAGAGACAGAAAGAAACAGAAT............................................................................................................................................................................................................221.000.00----------------------1.00--------------------------------------------------------------
................................GAAAGAAACAGAAAAACAGTAAGT..................................................................................................................................................................................................2411.001.00--------1.00----------------------------------------------------------------------------
..........................................................................................................................................................................................................................TGGCTCACACCTGTAATCCCAGCACTGGGAC.311.000.00---1.00---------------------------------------------------------------------------------
...................................................................................................................................................TGGGTATTGGGTGTTGATAT...................................................................................2011.001.00--------------------------------1.00----------------------------------------------------
.............................................................................................................................................................................................................................CTCACACCTGTAATCCCAGCACTGGGAGTCC311.000.00-----1.00-------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATAA..............................................................................................................................................171.000.001.00------------------------------------------------------------------------------------
............................................................................................................................................................................................GTAGTATGAAAAAGTGCCACG.........................................2111.001.00-------------------1.00-----------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATGAGTC.........................................................................................................................................221.000.001.00------------------------------------------------------------------------------------
....................................................................................................................................................................TATGGTTAGGGCTGCTAGAGCC................................................................2211.001.00--------------1.00----------------------------------------------------------------------
........................AAGAGACAGAAAGAAACAGAAACACA........................................................................................................................................................................................................261.000.00-------------------------1.00-----------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATTAC...........................................................................................................................................201.000.001.00------------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGATA..................................................................................................................................................................................................................261.000.00-1.00-----------------------------------------------------------------------------------
...........................................................................................................................................................................AGGGCTGCTAGAGCCAGGTAGTACG......................................................251.000.00-----1.00-------------------------------------------------------------------------------
.........................AGAGACAGAAAGAAACAGAAAAACAA.......................................................................................................................................................................................................261.000.00----------------------------------1.00--------------------------------------------------
...........................................................................................TGAGATGTTTGATATATGTGGCTGT......................................................................................................................................2511.001.00---------------------1.00---------------------------------------------------------------
........................................................................................................................................................ATTGGGTGTTGATATGGTTAGG............................................................................2211.001.00------1.00------------------------------------------------------------------------------
........................AAGAGACAGAAAGAAACAGAAAAACATA......................................................................................................................................................................................................281.000.00--1.00----------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATTAA...........................................................................................................................................201.000.001.00------------------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATT.............................................................................................................................................181.000.001.00------------------------------------------------------------------------------------
..................................................................................................................................................................GATATGGTTAGGGCTGCTAGAGCC................................................................2411.001.00---------------------------1.00---------------------------------------------------------
........................AAGAGACAGAAAGAAACAGAATA...........................................................................................................................................................................................................231.000.00----1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................................................................CTGTAATCCCAGCACTGGGAGCCCG251.000.00---1.00---------------------------------------------------------------------------------
.........................AGAGACAGAAAGAAACAGAAAAACATA......................................................................................................................................................................................................271.000.00--1.00----------------------------------------------------------------------------------
.........................AGAGACAGAAAGAAACAGAAAAAAA........................................................................................................................................................................................................251.000.00-1.00-----------------------------------------------------------------------------------
............................................................................................................GTGGCTGTGTTTTCCGTGC...........................................................................................................................191.000.00-----------------------1.00-------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATATCAG...........................................................................................................................................201.000.00---------1.00---------------------------------------------------------------------------
...............................................................................................................................AAGGAAACCTGGGGTTGACATGGGT..................................................................................................2511.001.00------------1.00------------------------------------------------------------------------
...........................................................................................TGAGATGTTTGATATAGTAG...........................................................................................................................................201.000.001.00------------------------------------------------------------------------------------
.....................ACCAAGAGACAGAAAGAAATA................................................................................................................................................................................................................211.000.00----1.00--------------------------------------------------------------------------------
..........CTCAAGGAACCACCAAGAGACA..........................................................................................................................................................................................................................2290.670.67-0.330.11-0.22--------------------------------------------------------------------------------
..................ACCACCAAGAGACAGAAAGAAA..................................................................................................................................................................................................................2280.620.62------------------------------------0.50--------------0.12---------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAAC.................................................................................................................................................................................................................2770.570.57-0.140.14----------------------------------0.29-----------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAA...................................................................................................................................................................................................................2570.570.57-0.290.14-----------------------------------0.14----------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAACAG...............................................................................................................................................................................................................2970.570.57-0.140.43----------------------------------------------------------------------------------
.............AAGGAACCACCAAGAGACAGA........................................................................................................................................................................................................................2190.560.56-0.110.22---------0.11------------------------------------------------------------------0.11-----
............CAAGGAACCACCAAGAGACAGAAA......................................................................................................................................................................................................................2480.500.50---------------0.12-----------------------0.25-------------------------------0.12-------------
....................CACCAAGAGACAGAAAGAAACAGAAAAAC.........................................................................................................................................................................................................2980.380.38-----------0.12---------------------------------------------------------------0.12-0.12-------
.............AAGGAACCACCAAGAGACAG.........................................................................................................................................................................................................................2090.330.33--0.11--------------------------------0.11---------------------------------------------0.11---
............CAAGGAACCACCAAGAGACAGA........................................................................................................................................................................................................................2290.330.33----------------------------------------------0.11-0.11-------0.11----------------------------
...........TCAAGGAACCACCAAGAGACAGA........................................................................................................................................................................................................................2390.330.33-----------0.110.11--------------------------------0.11---------------------------------------
...........TCAAGGAACCACCAAGAGACA..........................................................................................................................................................................................................................2190.330.33--0.11-0.11---------------------------------------0.11----------------------------------------
.............AAGGAACCACCAAGAGAC...........................................................................................................................................................................................................................1890.330.33----------------------------------------0.11------0.11-----------------------------------0.11-
...........TCAAGGAACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2770.290.29-----------0.14------------------------------------------------0.14------------------------
...........TCAAGGAACCACCAAGAGACAGAAAGAAAC.................................................................................................................................................................................................................3070.290.29-0.29-----------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAACAGA..............................................................................................................................................................................................................3070.290.29-0.29-----------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAACAGAAAAA..........................................................................................................................................................................................................3470.290.29--------------0.29----------------------------------------------------------------------
.............AAGGAACCACCAAGAGACAGAAAGAAACA................................................................................................................................................................................................................2970.290.29----------------------------------------------0.14--------------------0.14-----------------
..........CTCAAGGAACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2870.290.29-----------0.29-------------------------------------------------------------------------
............CAAGGAACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................2570.290.29----0.29--------------------------------------------------------------------------------
.............AAGGAACCACCAAGAGACAGAAAGAAA..................................................................................................................................................................................................................2770.290.29-0.140.14----------------------------------------------------------------------------------
..........CTCAAGGAACCACCAAGAGACAGAAAGAAA..................................................................................................................................................................................................................3070.290.29-0.29-----------------------------------------------------------------------------------
............CAAGGAACCACCAAGAGACAGAAAGAAACAGA..............................................................................................................................................................................................................3270.290.29------------------------------------------0.29------------------------------------------
.....AAGCCCTCAAGGAACCACCAAGAGAC...........................................................................................................................................................................................................................2680.250.25-----------------------------------------------------0.25-------------------------------
.................AACCACCAAGAGACAGAAAGAAACA................................................................................................................................................................................................................2580.250.25--0.12-----------------------------------------------------------------------0.12----------
...................CCACCAAGAGACAGAAAGAAACA................................................................................................................................................................................................................2380.250.25--------------------------------------------------0.25----------------------------------
.............AAGGAACCACCAAGAGACA..........................................................................................................................................................................................................................1990.220.22----------------------------------------0.11--------------0.11-----------------------------
.............AAGGAACCACCAAGAGACAGAA.......................................................................................................................................................................................................................2290.220.22----0.22--------------------------------------------------------------------------------
..........CTCAAGGAACCACCAAGAGAC...........................................................................................................................................................................................................................2190.220.22----0.22--------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAA......................................................................................................................................................................................................................2290.220.22-----------------0.11--------------------------------------------------------------0.11----
............CAAGGAACCACCAAGAGAC...........................................................................................................................................................................................................................1990.220.22--------------------------------------0.11-0.11--------------------------------------------
...............GGAACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................2270.140.14---------------------------------------------------------------0.14---------------------
..........CTCAAGGAACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................2770.140.14--------------------------------------0.14----------------------------------------------
......AGCCCTCAAGGAACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................3170.140.14---------------------------------------------0.14---------------------------------------
................GAACCACCAAGAGACAGAAAGAAACAG...............................................................................................................................................................................................................2770.140.14-----------------------------------------------------------------0.14-------------------
...CAAAGCCCTCAAGGAACCACCAAGAGACA..........................................................................................................................................................................................................................2970.140.14-0.14-----------------------------------------------------------------------------------
.............AAGGAACCACCAAGAGACAGAAAGAAAC.................................................................................................................................................................................................................2870.140.14-0.14-----------------------------------------------------------------------------------
.............AAGGAACCACCAAGAGACAGAAAGAAACAGAAAA...........................................................................................................................................................................................................3470.140.14-----------------------------------0.14-------------------------------------------------
...............GGAACCACCAAGAGACAGAAAGAAACAGAAAAAC.........................................................................................................................................................................................................3470.140.14---------------0.14---------------------------------------------------------------------
...........TCAAGGAACCACCAAGAGACAGAAAGAAACA................................................................................................................................................................................................................3170.140.14-----------------------------------------------0.14-------------------------------------
...............GGAACCACCAAGAGACAGAAAGAAA..................................................................................................................................................................................................................2570.140.14-------------------------------------------------------------0.14-----------------------
................GAACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2270.140.14--0.14----------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAACAGAAAA...........................................................................................................................................................................................................3370.140.14-----------------------------------------------------------0.14-------------------------
................GAACCACCAAGAGACAGAAAGAAAC.................................................................................................................................................................................................................2570.140.14------0.14------------------------------------------------------------------------------
..............AGGAACCACCAAGAGACAGAAAGAAATA................................................................................................................................................................................................................2870.141.43----0.14--------------------------------------------------------------------------------
.........CCTCAAGGAACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2970.140.14-------------------------------------0.14-----------------------------------------------
............CAAGGAACCACCAAGAGACAGAAAGAAACAGAA.............................................................................................................................................................................................................3370.140.14--------------------------------------------------------------0.14----------------------
..............AGGAACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................2370.140.14---------------------------------------0.14---------------------------------------------
.....AAGCCCTCAAGGAACCACCAAGAGACAGAAAGAA...................................................................................................................................................................................................................3470.140.14----------------------------------------------------------------0.14--------------------
............CAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAA..........................................................................................................................................................................................................3670.140.14-----------------------------------0.14-------------------------------------------------
.........CCTCAAGGAACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................2870.140.14-------------------------------------------0.14-----------------------------------------
.............AAGGAACCACCAAGAGACAGAAAGAA...................................................................................................................................................................................................................2670.140.14---------------------------------------------------------0.14---------------------------
................GAACCACCAAGAGACAGAAAGAAACAGAAAAAC.........................................................................................................................................................................................................3370.140.14----------------------------------------------------------0.14--------------------------
.............AAGGAACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2570.140.14------------------------------------------------------------------0.14------------------
..........CTCAAGGAACCACCAAGAGACAGAAAGAA...................................................................................................................................................................................................................2970.140.14--0.14----------------------------------------------------------------------------------
............CAAGGAACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2670.140.14-----------------------------------------0.14-------------------------------------------
.................AACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................2080.120.12------------------------------------------------------0.12------------------------------
....................CACCAAGAGACAGAAAGAAACAGAAAAACA........................................................................................................................................................................................................3080.120.12-----------------0.12-------------------------------------------------------------------
...................CCACCAAGAGACAGAAAGAAACAG...............................................................................................................................................................................................................2480.120.12------------0.12------------------------------------------------------------------------
....................CACCAAGAGACAGAAAGAAACA................................................................................................................................................................................................................2280.120.12--0.12----------------------------------------------------------------------------------
....................CACCAAGAGACAGAAAGAAACAGAA.............................................................................................................................................................................................................2580.120.12------------------------------------------------------------------------------0.12------
.....AAGCCCTCAAGGAACCACCAAGAGACAGA........................................................................................................................................................................................................................2980.120.12------------------0.12------------------------------------------------------------------
..................ACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2080.120.12-----------------------------------0.12-------------------------------------------------
.................AACCACCAAGAGACAGAAAGAAACAGAA.............................................................................................................................................................................................................2880.120.12----0.12--------------------------------------------------------------------------------
.............AAGGAACCACCAAGAGACAGAAA......................................................................................................................................................................................................................2380.120.12----0.12--------------------------------------------------------------------------------
...........TCAAGGAACCACCAAGAGACAGAAA......................................................................................................................................................................................................................2580.120.12------------------------------------------------------0.12------------------------------
.........CCTCAAGGAACCACCAAGAGACAGA........................................................................................................................................................................................................................2580.120.12----------------------------------------------------0.12--------------------------------
.........CCTCAAGGAACCACCAAGAGACA..........................................................................................................................................................................................................................2380.120.12-------------------------------------------------------0.12-----------------------------
....................CACCAAGAGACAGAAAGAA...................................................................................................................................................................................................................1980.120.12--------0.12----------------------------------------------------------------------------
.................AACCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................2180.120.12---------------------------------------------------0.12---------------------------------
...................CCACCAAGAGACAGAAAGA....................................................................................................................................................................................................................1980.120.12------------0.12------------------------------------------------------------------------
......AGCCCTCAAGGAACCACCAAGAG.............................................................................................................................................................................................................................2380.120.12----------------------------------------------------------------------------0.12--------
..................ACCACCAAGAGACAGAAAG.....................................................................................................................................................................................................................1980.120.12-------------------------------------------------------------------------0.12-----------
......AGCCCTCAAGGAACCACCAAGAGACAGAAA......................................................................................................................................................................................................................3080.120.12------0.12------------------------------------------------------------------------------
..........CTCAAGGAACCACCAAGAGACAG.........................................................................................................................................................................................................................2390.110.11--0.11----------------------------------------------------------------------------------
............CAAGGAACCACCAAGAGACAGAA.......................................................................................................................................................................................................................2390.110.11------------------------------------------------------------------------------------0.11
..........CTCAAGGAACCACCAAGAGACAGA........................................................................................................................................................................................................................2490.110.11--0.11----------------------------------------------------------------------------------
.....AAGCCCTCAAGGAACCACCAAG...............................................................................................................................................................................................................................2290.110.11--------------------------------------------------------0.11----------------------------
................GAACCACCAAGAGACAGAAA......................................................................................................................................................................................................................2090.110.11----------------------------------------------------------------------------------0.11--
......AGCCCTCAAGGAACCACCAAG...............................................................................................................................................................................................................................2190.110.11-0.11-----------------------------------------------------------------------------------
............CAAGGAACCACCAAGAGACAG.........................................................................................................................................................................................................................2190.110.11----0.11--------------------------------------------------------------------------------
...........TCAAGGAACCACCAAGAGAC...........................................................................................................................................................................................................................2090.110.11--0.11----------------------------------------------------------------------------------

Antisense strand
CATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAACAGTAAGTTGTCTTTTCCCTAGTTTGGTTTTGGTAATGGTTTGTGAGATGTTTGATATATGTGGCTGTGTTTTCCCTTAAAGGAAACCTGGGGTTGACATGGGTATTGGGTGTTGATATGGTTAGGGCTGCTAGAGCCAGGTAGTATGAAAAAGTGCCACGTATGCTGGGTGGCTCACACCTGTAATCCCAGCACTGGGAGG
...............................................................................................(((.(((((((..(((.(((((((..((((...(((...)))))))..))))))).)))...))))))))))......((((.....)))).((((...........))))............................................
......................................................................................87......................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR189783SRR553576(SRX182782)
source: Testis. (testes)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191502(GSM715612)
9genomic small RNA (size selected RNA from to. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
.......................................ACAACTTACTGTTTTTCTGT............................................................................................................................................................................................... 2011.001.00------1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................GTATGAAAAAGTGCCACGTATGCTC.................................. 251.000.00---1.00---------------------------------------------------------------------------------
................................................................CCCTAGTTTGGTTTTTCGT....................................................................................................................................................................... 191.000.00-------------------------------1.00-----------------------------------------------------
..................................................................AACCATTACCAAAACCAAACTAG................................................................................................................................................................. 2311.001.00----1.00--------------------------------------------------------------------------------
..............................................................................................AACACAGCCACATATATCAAACATC................................................................................................................................... 2511.001.00---------------------------------1.00---------------------------------------------------
.......................................................................................................................................................TATTGGGTGTTGATATTC................................................................................. 181.000.001.00------------------------------------------------------------------------------------
.............................................................................................................................................................................GGCTGCTAGAGCCAGGCG........................................................... 181.000.001.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GGGTGGCTCACACCTGTAATCCCAGAG........ 271.000.00---1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CACCTGTAATCCCAGCACTGAACC. 241.000.00-----1.00-------------------------------------------------------------------------------
.........................AGAGACAGAAAGAAACAGACA............................................................................................................................................................................................................ 211.000.00---------------1.00---------------------------------------------------------------------
........................TACTGTTTTTCTGTTTCTTTCTGTCTCTT..................................................................................................................................................................................................... 2911.001.00-----------1.00-------------------------------------------------------------------------
.................................................................................................................................................ACCATATCAACACCCAATACCCATG................................................................................ 2511.001.00--------------------1.00----------------------------------------------------------------
...........................................................................................................................................................................................GTGGCACTTTTTCATACTACC.......................................... 2111.001.00------------------------1.00------------------------------------------------------------
......................................................................................................................................................................................TTTTCATACTACCTGGCT.................................................. 1811.001.00----1.00--------------------------------------------------------------------------------
.....................................................AAACTAGGGAAAAGACAACT................................................................................................................................................................................. 2020.500.50--0.50----------------------------------------------------------------------------------
.......TCTTTCTGTCTCTTGGTGGTTCCTTGAGGGC.................................................................................................................................................................................................................... 3170.140.14-----------------------------------------0.14-------------------------------------------
.......TTCTGTCTCTTGGTGGTTCCTTGAGGGC....................................................................................................................................................................................................................... 2880.120.12--------------------------------------------------------------------0.12----------------