ID: uc004bqx.1_intron_0_0_chr9_130210006_r
GENE: (6)
chr9:130209956-130210205-


(2)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(8)
BREAST 		(34)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(8)
HELA 		(4)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(39)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
CTCATGACATCATCGATGACATCAACAGTGGTGCTGTGGAATGCCCAGCCGTAAGTGACATTTTCATTGTTACAGTAGGGGTGAAAGGGGGGCCACCCAGTGTATTCACAGAGATAAGCTGGGAAGTTTTGGAAATGGTTACTGGTGGGGTGGGATAATCCTTTTAAACTTTTTACTGATTTTTTTTTTCTTTCCCACAGAGTTAAGCACAAAGGAAAACATTTCAATAAAGGATCATTTGACAACTGGT
................................................................................................................................................((((((.((((.((((.................))))......)))).))))))....................................................
...............................................................................................................................................144.....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191517(GSM715627)
75genomic small RNA (size selected RNA from t. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029126(GSM416755)
143B. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM532876(GSM532876)
G547T. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
..........................................................................................................................................................................TTTTACTGATTTTTTTTTTCTTTCCCACAG..................................................30110.0010.00--2.00-1.001.001.00----------1.00---1.001.00--1.00---------1.00-------------------------------------------------------------------------
..........................................................................................................................................................................TTTTACTGATTTTTTTTTTCTTTCCCACAGAA................................................3217.003.00-6.00-------------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................TTTTACTGATTTTTTTTTTCTTTCCCACAT..................................................305.000.00-2.001.00--1.001.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................TTTACTGATTTTTTTTTTCTTTCCCACAG..................................................2914.004.00-----1.00-------------1.00------1.00------------1.00---------------------------------------------------------------------
..........................................................................................................................................................................TTTTACTGATTTTTTTTTTCTTTCCCACAGA.................................................3113.003.00-------------------1.00--------1.00-------1.00------------------------------------------------------------------------
............TCGATGACATCAACA...............................................................................................................................................................................................................................1542.252.25------------------2.25------------------------------------------------------------------------------------------
....................................................................................................................................................GGTGGGATAATCCTTACA....................................................................................182.000.00-2.00-----------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AAACATTTCAATAAAGGATCATTT..........2422.002.00---1.50--------------------------------------------------------------------0.50------------------------------------
..............................................................................................................................................................................ACTGATTTTTTTTTTCTTTTACC.....................................................232.000.00-------2.00-----------------------------------------------------------------------------------------------------
..................................................GTAAGTGACATTTTCATTGTTACA................................................................................................................................................................................2412.002.00---------2.00---------------------------------------------------------------------------------------------------
...........................................................................................................................................................................TTTACTGATTTTTTTTTTCTTTCCCACAGA.................................................3012.002.00--1.00--------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................................TGATTTTTTTTTTCTTTCCCACAG..................................................2412.002.00--------2.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................ATAAAGGATCATTTGACAACTGG.2361.671.67---0.17------------0.17------------0.33-------------------------0.17----------------------------0.17---0.17--0.17-------0.17-0.17-------
...................................................................................................................................................................................................................................TAAAGGATCATTTGACAACTGG.2271.571.57---------------0.86----------------0.14-----------------0.14--------0.14--------------------------------0.14---------0.14------
...........................................................................................................................................................................................................................CATTTCAATAAAGGATCATTTGAC.......2421.501.50--------1.50----------------------------------------------------------------------------------------------------
.TCATGACATCATCGATG........................................................................................................................................................................................................................................1721.501.50----------------0.50--------------0.50---------------------------------0.50-------------------------------------------
.............CGATGACATCAACAGTGGTGCTGTGGA..................................................................................................................................................................................................................2721.501.50----1.00------0.50-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CAAAGGAAAACATTTCAATAAAGGATC..............2721.501.50----------------0.50------------------------------------------0.500.50------------------------------------------------
.......................AACAGTGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2761.331.33---------------1.000.17---------------------------------------0.17----------------------------------------------------
.............CGATGACATCAACAGTGGA..........................................................................................................................................................................................................................191.000.00---1.00---------------------------------------------------------------------------------------------------------
................TGACATCAACAGTGGTGCTGTGGAATGCT.............................................................................................................................................................................................................291.000.00----------------------------------------1.00--------------------------------------------------------------------
...............................................................................................................................................................CCTTTTAAACTTTTTATTGT.......................................................................201.000.00--------------1.00----------------------------------------------------------------------------------------------
............................................................................................................................................ACTGGTGGGGTGGGATAATCCTCTT.....................................................................................251.000.00-------1.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TTTTTTCTTTCCCACTCTG................................................191.000.00----------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................TTTACTGATTTTTTTTTTCTTTCCCACAGAG................................................3111.001.00----1.00--------------------------------------------------------------------------------------------------------
........ATCATCGATGACATCAACAGTGGTGCT.......................................................................................................................................................................................................................2721.001.00----------------------1.00--------------------------------------------------------------------------------------
.....................TCAACAGTGGTGCTGTGGAAA................................................................................................................................................................................................................211.000.00------------------------------------------------1.00------------------------------------------------------------
...................CATCAACAGTGGTGCTGTGGAACG...............................................................................................................................................................................................................241.000.00---------1.00---------------------------------------------------------------------------------------------------
..........CATCGATGACATCAACAGTGGTGCTGTGG...................................................................................................................................................................................................................2921.001.00----------0.500.50-------------------------------------------------------------------------------------------------
..............................GTGCTGTGGAATGCCCAGA.........................................................................................................................................................................................................191.000.00-----------------------------------------------1.00-------------------------------------------------------------
.......................................................................................................................................................................................................................AAAACATTTCAATAAAGGATAAT............231.000.00------------------------------------------1.00------------------------------------------------------------------
.....................................................................................................................................................................................TTTTTTTTCTTTCCCACAGAGTTAAA...........................................261.000.00------------------------1.00------------------------------------------------------------------------------------
.............CGATGACATCAACAGTGGTGCTGTGGAATGC..............................................................................................................................................................................................................3121.001.00-----------0.50--------------------------------------------------------------0.50----------------------------------
.......................................................................................................................................................................ACTTTTTACTGATTTATAA................................................................191.000.00-------------------------------------------------1.00-----------------------------------------------------------
.....................TCAACAGTGGTGCTGTGAAA.................................................................................................................................................................................................................201.000.00----------1.00--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAAACATTTCAATAAAGGATCATTTGACAAAAAA.341.000.00--------------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................TTTTTTTTTCTTTCCCACAGATAA..............................................241.000.00---------------1.00---------------------------------------------------------------------------------------------
........ATCATCGATGACATCAACAGTGGTGCTGTGGA..................................................................................................................................................................................................................3221.001.00--------------------------------------------------0.50-------------------0.50--------------------------------------
.....GACATCATCGATGACATCAACAG..............................................................................................................................................................................................................................2321.001.00-------------1.00-----------------------------------------------------------------------------------------------
............TCGATGACATCAACAGTGG...........................................................................................................................................................................................................................1921.001.00--------------------------------0.50-----------------------------0.50----------------------------------------------
..............GATGACATCAACAGTGGTGCTGTGTAAC................................................................................................................................................................................................................281.000.00------------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAAACATTTCAATAAAGGATCA.............2221.001.00--------------------1.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AAACATTTCAATAAAGGATC..............2021.001.00-1.00-----------------------------------------------------------------------------------------------------------
..................................................................................................................................GGAAATGGTTACTGGTGG......................................................................................................1811.001.00-----------------------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................TTTACTGATTTTTTTTTTCTTTCCCACATA.................................................301.000.00--1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TTTTTTTTCTTTCCCACAG..................................................1911.001.00------1.00------------------------------------------------------------------------------------------------------
.............CGATGACATCAACAGTGGTGCTGTGGAAT................................................................................................................................................................................................................2921.001.00------------------------0.50------------------------------0.50-----------------------------------------------------
...............................................................................................................................................................................................................................TCAATAAAGGATCATTTGATA......211.000.00-------------1.00-----------------------------------------------------------------------------------------------
...........ATCGATGACATCAACAGTGGTGCTGTGG...................................................................................................................................................................................................................2821.001.00---------------------------------------------------------------0.50---0.50-----------------------------------------
..........................................................................................................................................................................................................TTAAGCACAAAGGAAAACATGACA........................241.000.00----------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................................................................ATAATCCTTTTAAACTTTTTCTA.........................................................................231.000.00--------------------------------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................................................................TCAATAAAGGATCATTTGACT......211.000.00-----------------------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................TTTTTACTGATTTTTTTTTTCTTTCCCACAG..................................................3111.001.00-----1.00-------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................TTTTACTGATTTTTTTTTTCTTTCCCAGAG..................................................301.000.00--1.00----------------------------------------------------------------------------------------------------------
............TCGATGACATCAACAGTGGTGCTGTGGAATGC..............................................................................................................................................................................................................3221.001.00------------------------------0.50----------0.50-------------------------------------------------------------------
...............................................................................................................................................................................................................................TCAATAAAGGATCATTTGACAACTGAGC281.000.00-------------1.00-----------------------------------------------------------------------------------------------
.........................................................ACATTTTCATTGTTAGCC...............................................................................................................................................................................181.000.00--------------1.00----------------------------------------------------------------------------------------------
........ATCATCGATGACATCAACAGTGGTGCTGTGG...................................................................................................................................................................................................................3121.001.00---------------------------0.500.50--------------------------------------------------------------------------------
............................................................................................................................................................................................................AAGCACAAAGGAAAATGCT...........................191.000.00------------1.00------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TTCAATAAAGGATCATTTGACC......221.000.00-------------------------------------------1.00-----------------------------------------------------------------
..................................................................................................................................................................................ATTTTTTTTTTCTTTCCCAGC...................................................211.000.00----------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TTTTTTTTTCTTTCCCACAG..................................................2011.001.00------1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................ACATTTCAATAAAGGATCATTTGACAACTGA.311.000.00---------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AAAGGATCATTTGACAACTGG.2171.001.00--------0.43-------------------------------------------0.29---------------------------------0.14----------------0.14-----
.................................................................................................................................................................................................................................AATAAAGGATCATTTGACAACTGG.2460.830.83---0.50--------------------------------------------------0.17-------------------------------------0.17----------------
..................................................................................................................................................................................................................................ATAAAGGATCATTTGACAACTGGT2450.800.80---0.40-------------------------------------------------------------------------------------------0.20-0.20-----------
................................................................................................................................................................................................................................CAATAAAGGATCATTTGACAACTG..2470.710.71-----------------------------------------------------0.71-------------------------------------------------------
................................................................................................................................................................................................................................CAATAAAGGATCATTTGACAACTGG.2550.600.60---0.20-------0.40-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................AAGGATCATTTGACAACTGG.2070.570.57----------0.29------------0.14--------------------------------------------------------------0.14----------------------
...........................................................................................................................................................................................................................CATTTCAATAAAGGATCATTTGA........2320.500.50---------0.50---------------------------------------------------------------------------------------------------
..........CATCGATGACATCAACAGTGGTGCTGTGGAATG...............................................................................................................................................................................................................3320.500.50-----------0.50-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AAAACATTTCAATAAAGGATCACTTG.........2620.501.00---------------------------------0.50---------------------------------------------------------------------------
...........ATCGATGACATCAACAGTGG...........................................................................................................................................................................................................................2020.500.50-------------------------------------------------------------------------------0.50-----------------------------
..........CATCGATGACATCAACAGTGGT..........................................................................................................................................................................................................................2220.500.50-----------0.50-------------------------------------------------------------------------------------------------
........ATCATCGATGACATCAACAGTGGT..........................................................................................................................................................................................................................2420.500.50----------------------------------------------------------------------------0.50--------------------------------
...................................................................................................................................................................................................................................TAAAGGATCATTTGACAACTGGT2360.500.50---------------------------------------------------------0.17---------------0.33-----------------------------------
..........CATCGATGACATCAACAGTG............................................................................................................................................................................................................................2020.500.50-----------0.50-------------------------------------------------------------------------------------------------
........ATCATCGATGACATCAACAGTGG...........................................................................................................................................................................................................................2320.500.50----------------------------------------------------------0.50--------------------------------------------------
........ATCATCGATGACATCAACAGT.............................................................................................................................................................................................................................2120.500.50-------------------------------0.50-----------------------------------------------------------------------------
..........CATCGATGACATCAACAGTGGTGCTGTGGAA.................................................................................................................................................................................................................3120.500.50-----------------------------------------0.50-------------------------------------------------------------------
.......................................................................................................................................................................................................................AAAACATTTCAATAAAGGATCATTT..........2520.500.50-------------------------0.50-----------------------------------------------------------------------------------
.....GACATCATCGATGACATCAACAGTGG...........................................................................................................................................................................................................................2620.500.50-----------------------------------------------------------------------0.50-------------------------------------
....TGACATCATCGATGACATA...................................................................................................................................................................................................................................1920.500.50------------0.50------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................ACAAAGGAAAACATTTCAATAAAGGAT...............2720.500.50---------------------------------0.50---------------------------------------------------------------------------
...........ATCGATGACATCAACAGTGGTGC........................................................................................................................................................................................................................2320.500.50------------------------------------------------------0.50------------------------------------------------------
..........CATCGATGACATCAACAGTGGTGCTGTGGAAT................................................................................................................................................................................................................3220.500.50---------------------------------------------------------------------------------0.50---------------------------
........ATCATCGATGACATCAAC................................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------0.50-----------------------------------------------
.....GACATCATCGATGACATCAACAGT.............................................................................................................................................................................................................................2420.500.50----------------------------------------------------------------0.50--------------------------------------------
....TGACATCATCGATGACATCAACAGTGGTGCTGTGGAATGCCC............................................................................................................................................................................................................4220.500.50-----------------------------------------------------------------------------0.50-------------------------------
..CATGACATCATCGATGACATCAACAG..............................................................................................................................................................................................................................2620.500.50---------------------------------------------------------------------------0.50---------------------------------
..................................................................................................................................................................................................................AAAGGAAAACATTTCAATAAAGG.................2320.500.50------------------------------------------------------------------0.50------------------------------------------
........................................................................................................................................................................................................................AAACATTTCAATAAAGGA................1840.500.50------------------------------0.25---------------------------------------------------------------0.25--------------
..........................................................................................................................................................................................................................ACATTTCAATAAAGGATCATTT..........2220.500.50--------------------------------------------------------------------0.50----------------------------------------
..........CATCGATGACATCAACAGTGG...........................................................................................................................................................................................................................2120.500.50---------------------------------------------------0.50---------------------------------------------------------
.................................................................................................................................................................................................................CAAAGGAAAACATTTCAATAAAGGA................2520.500.50--------------------------------------------------------------------------------0.50----------------------------
..........CATCGATGACATCAACAGTGGTGCTGTGGA..................................................................................................................................................................................................................3020.500.50--------------------------------0.50----------------------------------------------------------------------------
...........ATCGATGACATCAACAGTGGTGCTGTGGAA.................................................................................................................................................................................................................3020.500.50---------------------------------------------0.50---------------------------------------------------------------
.............................................................................................................................................................................................................AGCACAAAGGAAAACATTTCAATAAAGGAT...............3020.500.50------------------------------------------------------------------------------0.50------------------------------
....................................................................................................................................................................................................................AGGAAAACATTTCAATAAAGGATCATTTGA........3020.500.50--------------------------0.50----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................CATTTCAATAAAGGATCATTTGACA......2520.500.50---------------------------------------------0.50---------------------------------------------------------------
..........................................................................................................................................................................................................TTAAGCACAAAGGAAAACA.............................1920.500.50---------------------------------------------------------------------0.50---------------------------------------
....TGACATCATCGATGACAT....................................................................................................................................................................................................................................1820.500.50----------------------------------------------------------------------------------0.50--------------------------
.........................................................................................................................................................................................................................AACATTTCAATAAAGGATCATTTGA........2520.500.50---------------------------------------------------------0.50---------------------------------------------------
..........................................................................................................................................................................................................................ACATTTCAATAAAGGATCATTTGA........2420.500.50-----------------------0.50-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................AAGGAAAACATTTCAATAAAGG.................2220.500.50------------0.50------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................AAGGAAAACATTTCAATAAAGGATC..............2520.500.50--------------------------------------------------------0.50----------------------------------------------------
............TCGATGACATCAACAGTGGGGCT.......................................................................................................................................................................................................................2320.501.00----------------0.50--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TTAAGCACAAAGGAAAACACTTC.........................2320.500.50----------------------------------------------------0.50--------------------------------------------------------
....TGACATCATCGATGACATC...................................................................................................................................................................................................................................1920.500.50---0.50---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................AAACATTTCAATAAAGGATCA.............2120.500.50-----------------------------------------------------------------------------------0.50-------------------------
.............CGATGACATCAACAGTGGTGCT.......................................................................................................................................................................................................................2220.500.50----------------0.50--------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................AGGATCATTTGACAACTGG.1970.430.43------------------------------0.14---------------------------0.14---------------------------------------------0.14----
..................................................................................................................................................................................................................................ATAAAGGATCATTTGACAACTGGTAA2650.400.80---------------------------------------------------------------------------------------0.40---------------------
............................................................................................................................................................................................................AAGCACAAAGGAAAACATTTCAATA.....................2530.330.33------------------------------------------------------------------------------------------0.33------------------
.......................................................................................................................................................................................................................AAAACATTTCAATAAAGG.................1830.330.33-----------------------------------------------------------------------------------------0.33-------------------
........................ACAGTGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2660.330.33-------------------------------------------------------------------------------------0.33-----------------------
...................................................................................................................................................................................................................................TAAAGGATCATTTGACAACTGGTA2460.330.50-------------------------------------------------------------------------0.17------------0.17----------------------
............................TGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2270.290.29------------------------------0.29------------------------------------------------------------------------------
......................................................................................................................................................................................TTTTTTTCTTTCCCACAG..................................................1840.250.25-----------------0.25-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TAAGCACAAAGGAAAAC..............................1740.250.25---------------------------------------------------0.25---------------------------------------------------------
...................................................................................................................................................................................................................................TAAAGGATCATTTGACAACTG..2190.220.22---------------------------------------------------------------------------------------------0.11--------------0.11
..................................................................................................................................................................................................................AAAGGAAAACATTTCAATA.....................1950.200.20------------0.20------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AACATTTCAATAAAGGA................1750.200.20------------------------------------------------------------------------------------------------0.20------------
.............................................................................................................................................................................................................................TTTCAATAAAGGATCATTTGACAACTGG.2850.200.20----------------------------------------------------------------------------------------0.20--------------------
..........................AGTGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2460.170.17---------0.17---------------------------------------------------------------------------------------------------
...................CATCAACAGTGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................3160.170.17--------------------------------------------------0.17----------------------------------------------------------
......................CAACAGTGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2860.170.17----------------------------------------------------------------------------------------------------0.17--------
....................................................................................................................................................................................................................................AAAGGATCATTTGACAACTGGT2260.170.17--------------------------------------------------0.17----------------------------------------------------------
......................................................................................................................................................................................................................................AGGATCATTTGACAACTGGT2060.170.17---------------------------------------------------------------------------------------------0.17---------------
.........................CAGTGGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2560.170.17---------------------------------------------------0.17---------------------------------------------------------
..............................GTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2070.140.14---------------------------------------------------------------------------------------------------------0.14---
.............................GGTGCTGTGGAATGCCCAGCC........................................................................................................................................................................................................2170.140.14---------0.14---------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................AAGCACAAAGGAAAACAT............................1870.140.14-------------------------------------------------------------------------------------0.14-----------------------
................................................................................................................................................................................................................................CAATAAAGGATCATTTGACAACTGC.2570.140.71-------------------------------------------------------------------------------------------0.14-----------------
........................................................................................................................................................................CTTTTTACTGATTTTTTTT...............................................................1980.120.12----0.12--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................ATAAAGGATCATTTGACAACTG..2280.120.12----------------------------------------------------------------------------------------------------------0.12--
..................................................................................................................................................................................................................AAAGGAAAACATTTCAAT......................1890.110.11-----------------------------------------------------------------------------------------------------------0.11-
.....................................................................................................................................................................................................................................AAGGATCATTTGACAACTG..1990.110.11------------------------0.11------------------------------------------------------------------------------------

Antisense strand
CTCATGACATCATCGATGACATCAACAGTGGTGCTGTGGAATGCCCAGCCGTAAGTGACATTTTCATTGTTACAGTAGGGGTGAAAGGGGGGCCACCCAGTGTATTCACAGAGATAAGCTGGGAAGTTTTGGAAATGGTTACTGGTGGGGTGGGATAATCCTTTTAAACTTTTTACTGATTTTTTTTTTCTTTCCCACAGAGTTAAGCACAAAGGAAAACATTTCAATAAAGGATCATTTGACAACTGGT
................................................................................................................................................((((((.((((.((((.................))))......)))).))))))....................................................
...............................................................................................................................................144.....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)		SRR029128(GSM416757)
H520. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR189782SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191439(GSM715549)
176genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM359192(GSM359192)
HepG2_3pM_6. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191517(GSM715627)
75genomic small RNA (size selected RNA from t. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029126(GSM416755)
143B. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM532876(GSM532876)
G547T. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
...............................................TACTGTAACAATGAAAATGTCACTTACGGC............................................................................................................................................................................. 30110.0010.0010.00------------------------------------------------------------------------------------------------------------
...........................................CCCAGCCGTAAGTGACATTTTCATTGTTAG................................................................................................................................................................................. 305.000.005.00------------------------------------------------------------------------------------------------------------
........................................................TTCACCCCTACTGTAACAATGAAAATGTC..................................................................................................................................................................... 2912.002.002.00------------------------------------------------------------------------------------------------------------
..........................................GTCACTTACGGCTGGGC............................................................................................................................................................................................... 1711.001.00-------------------------------------1.00-----------------------------------------------------------------------
..............................................................................................................................................................................................................GCACAAAGGAAAACACCC.......................... 181.000.00-------1.00-----------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AACATTTCAATAAAGGCAC.............. 191.000.00--------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................ACCAGTAACCATTTCCA........................................................................................................ 1711.001.00----------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................................................................TCCCACAGAGTTAAGGGC........................................ 181.000.00----1.00--------------------------------------------------------------------------------------------------------
..........................................TGTAACAATGAAAATGTCACTTACGGCTGGGC................................................................................................................................................................................ 3211.001.001.00------------------------------------------------------------------------------------------------------------
..........CACCACTGTTGATGTCATCGATG......................................................................................................................................................................................................................... 2321.001.00--------------------------------------------1.00----------------------------------------------------------------
.........................................................................................................................................CACCCCACCAGTAAC.................................................................................................. 1550.200.20--------------------------------------------------------------------------------------------------0.20----------
.......................................................................................................................................................................................................................................CCAGTTGTCAAATGATCC. 1870.140.14-------------------------------0.14-----------------------------------------------------------------------------