ID: uc004bpn.2_intron_4_0_chr9_128001813_r.3p
GENE: (3)
chr9:128001763-128002012-


(1)
AGO2.ip 		(1)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(4)
HEART 		(7)
HELA 		(3)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTTTTTTTTTAATTTTCAGTAGAGACAGGGTTTCTCCACATTGCCCAGGCTGGTCTTGAAATCCTGCCCTCAGGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCAGAAGCCACCGCCTGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAGGTTACCCATGCAGTTGTTACTGTACCAGCCTATTTTAATGATGCCCAACG
........................................................................((((...((.((((((.....(((((......)))))....)))))).)).))))...........................................................................................................................
.......................................................................72.....................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................TGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................701153.00153.0053.0086.00-7.00-4.00--2.00------------1.00--------------------
...................................................................................................................................GGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................69140.0040.0028.009.00-2.00-1.00------------------------------------
......................................................................................................................................CAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................66136.0036.0022.0013.00---1.00------------------------------------
..................................................................................................................................TGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTA...................................................69121.0021.0021.00-----------------------------------------
.....................................................................................................................................CCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................67112.0012.0012.00-----------------------------------------
...................................................................................................................................GGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAGT.................................................7018.0040.001.007.00----------------------------------------
...............................................................................................................................GCCTGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................7316.006.00-6.00----------------------------------------
....................................................................................................................................GCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAGGTT...............................................7116.006.00-6.00----------------------------------------
..................................................................................................................................TGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAGT.................................................7116.00153.005.00-------1.00---------------------------------
..............................................................................................................................CGCCTGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................7414.004.00-4.00----------------------------------------
.................AGTAGAGACAGGGTTTAGAA.....................................................................................................................................................................................................................203.000.00-------3.00----------------------------------
....................................................................................................................................GCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAG..................................................6813.003.00-2.00---1.00------------------------------------
...............................................................................................................................................................................................................ATGCAGTTGTTACTGTACCAGCT....................232.000.00------------2.00-----------------------------
...................................................................................................................................................................................................................AGTTGTTACTGTACCAGCC....................1912.002.00-----------------------------1.00----1.00-------
.....................................................................................................................................................................................................................TTGTTACTGTACCAGCCTATGCAG.............242.000.00-------------2.00----------------------------
.................AGTAGAGACAGGGTTTCTCCACTGG................................................................................................................................................................................................................252.000.00--2.00---------------------------------------
..................................................................................................................................TGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTT....................................................6812.002.00---2.00--------------------------------------
...........................................................................................................................................................................................................ACCCATGCAGTTGTTACTGTACC........................2311.001.00---------------1.00--------------------------
................................................................................TCCTGCCTCAGCCTCCCAAAGTGCTGGGTGTG..........................................................................................................................................321.000.00-----------1.00------------------------------
............................................................................ATCCTCCTGCCTCAGCCTCGCC........................................................................................................................................................221.000.00--1.00---------------------------------------
........................................................TGAAATCCTGCCCTCTCAG...............................................................................................................................................................................191.000.00----------1.00-------------------------------
................................................................................................................................................................................................................TGCAGTTGTTACTGTACCAGC.....................2111.001.00------------------------1.00-----------------
.................................................................................................................................................................................................................GCAGTTGTTACTGTACCAGC.....................2011.001.00------1.00-----------------------------------
.....................................................................................................................................................................................................................TTGTTACTGTACCAGCCTATTT...............2211.001.00----------------------1.00-------------------
..........AATTTTCAGTAGAGACAGGGCCTC........................................................................................................................................................................................................................241.000.00---------1.00--------------------------------
.......................................................................................................CTGGGATTATAGGCAGAGAA...............................................................................................................................201.000.00---------------------------1.00--------------
.................AGTAGAGACAGGGTTTCTCCACCC.................................................................................................................................................................................................................241.000.00--1.00---------------------------------------
....................................................................................................................................................................................................................GTTGTTACTGTACCAGC.....................1711.001.00------1.00-----------------------------------
....................................................................................................................................................................................................TTAGGTTACCCATGCAG.....................................1711.001.00-----------------------------------1.00------
..................................................................................................................................................................................................................CAGTTGTTACTGTACCAGC.....................1911.001.00--------------------1.00---------------------
..........................................GCCCAGGCTGGTCTTGAAATTC..........................................................................................................................................................................................221.000.00------------------1.00-----------------------
.............TTTCAGTAGAGACAGGGACTC........................................................................................................................................................................................................................211.000.00----1.00-------------------------------------
.............TTTCAGTAGAGACAGGGGTCC........................................................................................................................................................................................................................211.000.00--1.00---------------------------------------
...........ATTTTCAGTAGAGACAGGGGCTC........................................................................................................................................................................................................................231.000.00--1.00---------------------------------------
.......................................................................................................................................AGACTGTAATTTAAATAAGGGT.............................................................................................2211.001.00------------------------------1.00-----------
...........................................................................................................................................................................................................ACCCATGCAGTTGTTACTGTACCAGC.....................2611.001.00------------------------------------1.00-----
............TTTTCAGTAGAGACAGGGTTTCCATG....................................................................................................................................................................................................................261.000.00----1.00-------------------------------------
...........ATTTTCAGTAGAGACAGGGGTCC........................................................................................................................................................................................................................231.000.00--1.00---------------------------------------
..........................................................................................................................................................................................................................ACTGTACCAGCCTATTTTAATG..........2211.001.00------1.00-----------------------------------
.............................................................................................................................................................................................................CCATGCAGTTGTTACTGTACCAGC.....................2411.001.00------1.00-----------------------------------
...................................................................................................AGTGCTGGGATTATAGGCAGAGCCT..............................................................................................................................251.000.00----1.00-------------------------------------
.............TTTCAGTAGAGACAGGGGTGG........................................................................................................................................................................................................................211.000.00--1.00---------------------------------------
.............TTTCAGTAGAGACAGGGTTTCCCA.....................................................................................................................................................................................................................241.000.00----1.00-------------------------------------
..................................................................................................................................TGGCCAGACTGTAATTTAAATAAGGGTT............................................................................................2811.001.00-----------------------1.00------------------
........................................................................................................................................................................ACAATACACTTAATTATCTTTTATCCTTCTAG..................................................321.000.00---------1.00--------------------------------
...........ATTTTCAGTAGAGACAGGGTTCCGG......................................................................................................................................................................................................................251.000.00----1.00-------------------------------------
..........................................................................TGATCCTCCTGCCTCAGCCTCCCAAAGTGACGG...............................................................................................................................................331.000.00--1.00---------------------------------------
......................................................................................................................................................................................................................TGTTACTGTACCAGCCTATTTTAATG..........2611.001.00----------------------------1.00-------------
...................................................................CCTCAGGTGATCCTCCTGCCGGC................................................................................................................................................................231.000.00--1.00---------------------------------------
.......................................................................................................................................AGACTGTAATTTAAATAAGGGTTAAA.........................................................................................2611.001.00-------------------1.00----------------------
..............................................AGGCTGGTCTTGAAATCCTTGGG.....................................................................................................................................................................................231.000.00----------------1.00-------------------------
.............................................................................................................................................................................................................................GTACCAGCCTATTTTAATA..........191.000.00--------------1.00---------------------------
...........ATTTTCAGTAGAGACAGGCTCT.........................................................................................................................................................................................................................221.000.00--1.00---------------------------------------
........................................................................................................................................................................................................................TTACTGTACCAGCCTAATG...............191.000.00--------------------------------1.00---------
..............TTCAGTAGAGACAGGGTTTCTCCCTT..................................................................................................................................................................................................................261.000.00----1.00-------------------------------------
...............................................................................................................................................................................................................................ACCAGCCTATTTTAATGATGCCCAAC.2611.001.00--------------1.00---------------------------
...........................................................................................................................................................................................................ACCCATGCAGTTGTTACTGTACCA.......................2411.001.00---------------------------------1.00--------
.............................GTTTCTCCACATTGCCCAT..........................................................................................................................................................................................................191.000.00----------1.00-------------------------------
.........................................................................................................................................................................................................TTACCCATGCAGTTGTTACTGTACCAGC.....................2811.001.00-------------------------------------1.00----
...............................................................................................................................GCCTGGCCAGACTGTAATTTAAA....................................................................................................2311.001.00--------------------------1.00---------------
.....................................................................................................................................................................................................................TTGTTACTGTACCAGCCT...................1820.500.50---------------------------------------0.50--
........................................................................................................................................................................................................GTTACCCATGCAGTTGTTA...............................1920.500.50--------------------------------------0.50---
...............................................................................................................................................................................................................................ACCAGCCTATTTTAATGATGC......2120.500.50------0.50-----------------------------------
......................................................................................................................................................................................................................TGTTACTGTACCAGCC....................1630.330.33----------------------------------------0.33-
..................................................................................................................................................................................................TTTTAGGTTACCCATG........................................1640.250.25--------------------------------------0.25---
.....................................................................................................................................................................................................................TTGTTACTGTACCAGC.....................1640.250.25-----------------------------------------0.25

Antisense strand
TTTTTTTTTTAATTTTCAGTAGAGACAGGGTTTCTCCACATTGCCCAGGCTGGTCTTGAAATCCTGCCCTCAGGTGATCCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCAGAAGCCACCGCCTGGCCAGACTGTAATTTAAATAAGGGTTAAACTATGTGACAATACACTTAATTATCTTTTATCCTTTTAGGTTACCCATGCAGTTGTTACTGTACCAGCCTATTTTAATGATGCCCAACG
........................................................................((((...((.((((((.....(((((......)))))....)))))).)).))))...........................................................................................................................
.......................................................................72.....................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191427(GSM715537)
153genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
........................................................................GGTGATCCTCCTGCCTCAGCCTCCCAAGAGG................................................................................................................................................... 312.000.00--1.00-1.00-------------------------------------
.......................................................................AGGTGATCCTCCTGCCTCAGCCTCGG......................................................................................................................................................... 261.000.00----1.00-------------------------------------
................................................................................TCCTGCCTCAGCCTCCCAAAGTGCTGGTCGT........................................................................................................................................... 311.000.00-----------1.00------------------------------
........................................................................GGTGATCCTCCTGCCTCAGCC............................................................................................................................................................. 211.000.00--1.00---------------------------------------
.................................................................GCCCTCAGGTGATCCTCCTGCCTCGG............................................................................................................................................................... 261.000.00--1.00---------------------------------------
........................................................................GGTGATCCTCCTGCCTCAGCCTCC.......................................................................................................................................................... 241.000.00--1.00---------------------------------------
.............................................................TCCTGCCCTCAGGTGATCCTCCTGCCTCAGTC............................................................................................................................................................. 321.000.00--1.00---------------------------------------
......................................CAAGACCAGCCTGGGCAATG................................................................................................................................................................................................ 2001.001.00-------------------------------1.00----------
..........................................................................................................................CCACCGCCTGGCCAGAGA.............................................................................................................. 181.000.00-----------------1.00------------------------
........................................................................GGTGATCCTCCTGCCTCAGCCTGAGC........................................................................................................................................................ 261.000.00----1.00-------------------------------------
........................................................................GGTGATCCTCCTGCCTCAGCCTCCCAGAC..................................................................................................................................................... 291.000.00--1.00---------------------------------------
...........................GGGTTTCTCCACATTGCCCAGGCTGGTCATG................................................................................................................................................................................................ 311.000.00---------1.00--------------------------------
.................................................................GCCCTCAGGTGATCCTCCGGGA................................................................................................................................................................... 221.000.00-------------------------1.00----------------
..............................................................TGAGGCAGGAGGATCACCTGAGGGCAGG................................................................................................................................................................ 2840.250.25--0.25---------------------------------------