ID: uc004boy.1_intron_1_0_chr9_127622544_r.3p
GENE: RPL35(2)
chr9:127622494-127622743-


(7)
B-CELL 		(4)
BRAIN 		(7)
BREAST 		(27)
CELL-LINE 		(2)
FIBROBLAST 		(4)
HEART 		(6)
HELA 		(1)
KIDNEY 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(48)
SKIN 		(1)
XRN.ip

Sense strand
ACTTCCTCATAAAGCCTCTGCTGTCTCTCCCATGCCCCTCTCTTCCCTCCTCAGACCTCACTCCCAGAACGCCTTCCTCCTGAGTGAATATGGATGGGTTGATGGGGGAGGCTGCAGCTATTGCTGCCCTATGTGTGAGTCCTGAGTCTTGGGTAGTGCTATGTGTCTTCCCTATCTTCACTGACATCTCTGTTTTGTAGCCGAGTCGTCCGGAAATCCATTGCCCGTGTTCTCACAGTTATTAACCAGA
.........................................................((((((...(((....))).....))))))....((((((((.((((((((((((...(((....(((((((.....................))))))))))....))))))))))))...)))..))))).............................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105752CONTROL(GSM1105752)
small RNA sequencing data. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR343334SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR343336
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGA.................................................251203.0057.00146.003.004.001.00-1.001.003.002.001.00--1.001.002.001.001.001.003.001.00---2.00-2.002.002.00-1.001.00-1.001.00-----1.001.001.00----1.00--------2.001.00-1.00----1.00-----------1.001.00---------1.00--------1.00-------1.00-1.001.001.00--1.00----
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAG..................................................24157.0057.0011.00-2.001.003.003.00---2.002.00-2.00-2.00------2.003.001.00--1.001.00-2.002.00----1.001.00-2.00--1.00---1.001.002.00--2.001.001.001.00--1.00--------1.00--------1.00----------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGAA................................................26154.0057.0041.001.001.00--1.00-1.001.00---1.00---1.00----1.001.00--------------------------2.00-1.00------------------1.00--------------------------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAG..................................................25150.0050.003.009.005.005.002.002.00-1.001.002.001.00-1.003.00---1.001.001.00-1.00---1.00-------------------1.00-------1.00-------1.00--1.00--1.00-1.00-1.00-----1.00-------1.00------1.00----------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAGA.................................................26131.0050.0021.00------2.001.00-2.00------------1.00----------1.001.00----------------------------------------------1.00----------1.00---------------------
..............................................................................................................................................................................TCTTCACTGACATCTCTGTTTTGTAG..................................................2618.008.001.002.00-1.001.00-1.00---------2.00--------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGAT................................................2617.0057.007.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAGAA................................................2715.0050.005.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTA...................................................2315.005.004.00-----------------------------------------------------------------------------1.00------------------------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAAT.................................1614.004.00-----------4.00-------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ATCTTCACTGACATCTCTGTTTTGTAGA.................................................2813.001.002.00-1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGAAT...............................................2713.0057.003.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGT....................................................2213.003.00----------------------------2.00---------------------------------------------------------------------------1.00----------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATT................................183.000.00-------------------1.00----1.00-----------------------------------------1.00------------------------------------------------
...............................................TCCTCAGACCTCACTCCCAGAACGC..................................................................................................................................................................................2513.003.00------3.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGTT................................................2613.0057.003.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATCCA..............................2013.003.00-------------------------------1.00----------------------------------------------------1.00---------------1.00--------------
..................................................................................................................................................................................CACTGACATCTCTGTTTTGTAG..................................................2212.002.00-2.00-----------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TCACTGACATCTCTGTTTTGTAGA.................................................2412.001.002.00------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CATTGCCCGTGTTCTCACAGTTA.........2312.002.00--------------------------------------------------------------1.00------------------------------------------------1.00---
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGG.................................................2512.0057.002.00------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CGGAAATCCATTGCCCGTGT....................2012.002.00------------------------------------------2.00------------------------------------------------------------------------
...................................................................................................................................................................................................................GGAAATCCATTGCCCGTGTT...................2012.002.00-----------------1.00-----------------------------------------------------------------------------------1.00-------------
..............................................................................................................................................................................................................................GCCCGTGTTCTCACAGT...........1712.002.00------------------------------------------------------------1.00---------------------------------1.00--------------------
...................................................................................................................................................................................ACTGACATCTCTGTTTTGTAGAA................................................232.000.002.00------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAATCC...............................1812.002.00---------------1.00--------------------------------1.00------------------------------------------------------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAATCCATTGCCCGTGTTC..................3112.002.00------2.00------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................AAATCCATTGCCCGTGTTCTCACAG............2512.002.00-------------------------------------------2.00-----------------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATCC...............................1912.002.00------------------------1.00-----------------------------------------------------------------------------------1.00------
..........................................................................................................................................................................................................GAGTCGTCCGGAAATCCA..............................1812.002.00------------------------------------------------1.00------------------------------------------------1.00-----------------
...................................................................................................................................................................................ACTGACATCTCTGTTTTGTAGA.................................................222.000.002.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATCCATTGCCC........................2612.002.00-----------------------------------------------------------1.00------------------------------------------1.00------------
.....................................................................................................................................................................................TGACATCTCTGTTTTGTAG..................................................1911.001.001.00------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGAG................................................2611.0057.001.00------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAATCCATTGCCCGTG.....................2811.001.00-------------------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................ACTGACATCTCTGTTTTGTAGAT................................................231.000.001.00------------------------------------------------------------------------------------------------------------------
.............................................................TCCCAGAACGCCTTCCGTA..........................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------1.00---------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTT........................................................1811.001.00---------------------------------------------------------------------------------------------------1.00---------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTTT....................................................221.000.00----------------------------1.00--------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAATC................................1711.001.00-----------1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAATCCA..............................1911.001.00--------------------1.00----------------------------------------------------------------------------------------------
...........................................................................................GGATGGGTTGATGGGGAGGA...........................................................................................................................................201.000.00---------1.00---------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................TAGCCGAGTCGTCCGGAA...................................1811.001.00--------------------1.00----------------------------------------------------------------------------------------------
.............................................................................................ATGGGTTGATGGGGGAGGCTGCAGCC...................................................................................................................................261.000.00------------------------------------------------------------------------------------------1.00------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAGAT................................................2711.0050.001.00------------------------------------------------------------------------------------------------------------------
..................................................................................................................................ATGTGTGAGTCCTGAGTCTTGGGTAGTGC...........................................................................................2911.001.00--------------------------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTGGA.................................................2511.003.001.00------------------------------------------------------------------------------------------------------------------
.........................................................................................ATGGATGGGTTGATGGGGGAGGCC.........................................................................................................................................241.000.00-------------------------------------------------------------------------------1.00-----------------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGT....................................................2311.001.00----1.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CCGGAAATCCATTGC..........................1511.001.00-------------------------------------------------------------------------1.00-----------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAGC.................................................2511.001.001.00------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CCGGAAATCCATTGCCCGTGTT...................2211.001.00-------------------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................................................GGAAATCCATTGCCCGTG.....................1811.001.00--------------------------------------------------------------------------------------------------1.00----------------
..................................................................................................................................................................................................................CGGAAATCCATTGCCCGTGTTCTC................2411.001.00-----------------------------------------------------------------------------------1.00-------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAA...................................1511.001.00-------------------------1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................................................TCTCTGTTTTGTAGCCGAGTCGTCCGG.....................................2711.001.00---------------------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAGC.................................................2611.001.001.00------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................CGGAAATCCATTGCCCGTGTTCTCACAG............2811.001.00---------------1.00---------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GGAAATCCATTGCCCGTGTTCTC................2311.001.00-----------------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GTCCGGAAATCCATTGCCCGTGTTCT.................2611.001.00--------------------------------------------------------------------1.00----------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATTT...............................191.000.00------------------------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................AAATCCATTGCCCGTGTTCTCATA.............241.000.00-------------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................CACTGACATCTCTGTTTTGTAGA.................................................2311.002.00-------------------1.00-----------------------------------------------------------------------------------------------
.........................................................................TTCCTCCTGAGTGAATATGGATGGG........................................................................................................................................................2511.001.00----------------------------------------------------------------------------------------1.00--------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAGAG................................................2711.0050.001.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AGTCGTCCGGAAATCCATT............................1911.001.00------------------------------------------------------1.00------------------------------------------------------------
......................................................................................................TGGGGGAGGCTGCAGCTATTG...............................................................................................................................2111.001.001.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATCCATTGCCCGTGT....................3011.001.00------------------------------------1.00------------------------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATCCATTGCCCGT......................2811.001.00----------------------------------1.00--------------------------------------------------------------------------------
...................................................................................................................................................................................................................GGAAATCCATTGCCCGTGTTCTCACAG............2711.001.00------------------------------------------------------1.00------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATC................................1811.001.00--------------------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................CTCACAGTTATTAACCCGAC201.000.00----------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................TCACTGACATCTCTGTTTTGTAG..................................................2311.001.00-1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GGAAATCCATTGCCCGTGTTCTCACA.............2611.001.00---------------------------------------------------------1.00---------------------------------------------------------
............................................................................................................................................................................................................................TTGCCCGTGTTCTCACAGTTATTAACCAG.2911.001.00---------------------------------1.00---------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTGCCCGTGTTCTCACA.............1711.001.00------------------------------------------------------------------------1.00------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTG.....................................................2111.001.001.00------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CCGAGTCGTCCGGAAATTA...............................191.000.00--------------------1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................CTTCACTGACATCTCTGTTTTGTAGAAA...............................................2811.0050.001.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................ATCTTCACTGACATCTCTGTTTTGTAG..................................................2711.001.00---------------------------------------1.00---------------------------------------------------------------------------
..............................................................................................................................................................................TCTTCACTGACATCTCTGTTTTGTAGA.................................................2711.008.001.00------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................TCTTCACTGACATCTCTGTTTTGTAGG.................................................2711.008.001.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATTGCCCGTGTTCTCACAG............1911.001.00------------------------------------------------------------------------------------------------1.00------------------
.........................................................................................................................................................................................................CGAGTCGTCCGGAAATCCATTG...........................2211.001.00---------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................CCCGTGTTCTCACAGTTATTAACCAG.2611.001.00--------------------------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................................................GGAAATCCATTGCCCGTGTTCT.................2211.001.00-------------------------------1.00-----------------------------------------------------------------------------------
................................................................................................................................................................................TTCACTGACATCTCTGTTTTGTAT..................................................2411.005.00-------------------------------------------------------------------------------------------1.00-----------------------
.......................................................................................ATATGGATGGGTTGATGGGGG..............................................................................................................................................2111.001.00------------------------1.00------------------------------------------------------------------------------------------
........................................................................................TATGGATGGGTTGATGGG................................................................................................................................................1820.500.50---------------------------------------------------------0.50---------------------------------------------------------
.....................................................................................................................................................................................................................AAATCCATTGCCCGTGT....................1720.500.50--------------------------------0.50----------------------------------------------------------------------------------
....................................................................................................................................................................................................................GAAATCCATTGCCCG.......................1520.500.50--------------------------------0.50----------------------------------------------------------------------------------
......................................................................................................................................................................................................................AATCCATTGCCCGTG.....................1520.500.50---------------------------------0.50---------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GTTCTCACAGTTATTAACCAG.2120.500.50--------------------------------0.50----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GTTCTCACAGTTATTA......1650.400.40--------------------------------0.40----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TTCTCACAGTTATTAACCAG.2030.330.33----------------------------------------------------------------------------------------------------------------0.33--
.........................................................................................................................................................................................................................CCATTGCCCGTGTTCTC................1730.330.33-----------------------------------------------------------------------------------------------------------------0.33-
......................................................................................................................................................................................................................................TCTCACAGTTATTAACCAG.1930.330.33------------------------------------------------------------------------------------------------------------------0.33
.......................................................CCTCACTCCCAGAACG...................................................................................................................................................................................1630.330.33----------------------------------0.33--------------------------------------------------------------------------------
............................................................................................................................................................................................................................TTGCCCGTGTTCTCA...............1560.170.17----------------------------------------------------------0.17--------------------------------------------------------

Antisense strand
ACTTCCTCATAAAGCCTCTGCTGTCTCTCCCATGCCCCTCTCTTCCCTCCTCAGACCTCACTCCCAGAACGCCTTCCTCCTGAGTGAATATGGATGGGTTGATGGGGGAGGCTGCAGCTATTGCTGCCCTATGTGTGAGTCCTGAGTCTTGGGTAGTGCTATGTGTCTTCCCTATCTTCACTGACATCTCTGTTTTGTAGCCGAGTCGTCCGGAAATCCATTGCCCGTGTTCTCACAGTTATTAACCAGA
.........................................................((((((...(((....))).....))))))....((((((((.((((((((((((...(((....(((((((.....................))))))))))....))))))))))))...)))..))))).............................................................
........................................................57.............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105752CONTROL(GSM1105752)
small RNA sequencing data. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR343334SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)		SRR343336
..................................................................GAACGCCTTCCTCCTGGGC..................................................................................................................................................................... 191.000.00----------------------------------------------------1.00--------------------------------------------------------------
...................................CCCTCTCTTCCCTCCTCCCC................................................................................................................................................................................................... 201.000.00-------------------------------------------------------------------------------------------------------------1.00-----
...................................................................................................................TCAGGACTCACACATAGGGCAGCAATAGCT......................................................................................................... 3011.001.00--------1.00----------------------------------------------------------------------------------------------------------
............................................CCCTCCTCAGACCTCACGCAG......................................................................................................................................................................................... 211.000.00--------------------------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................................................................GTTAATAACTGTGAGAACACGG.... 2211.001.00-----------------------------------------------------------------------------------------1.00-------------------------
......................................................................CACTCAGGAGGAAGGC.................................................................................................................................................................... 1630.330.33-------------0.33-----------------------------------------------------------------------------------------------------