ID: uc004bke.2_intron_20_0_chr9_123232499_r.3p
GENE: (1)
chr9:123232449-123232698-


(2)
BREAST 		(9)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
GCCTGTTGAGAAAGGGAAAATTAATTTTGCTCCAAAGGTGGTGCCTTAAGCCCCCTCTGTGTACTATGCTCCCTTCCGCCCCACCTCCCCCATTCACATTGCTTTGGATGGATTGCACTGGGGTCAGTCTTGGGAGGATCTGTTTCTGATATTCTTTTTCTCCTCCCCCTCCCCACCTTTTTTTTTTCTTTTTTGGGCAGAAGAATCATTTTCACTTTATAGTGATCAAACATCTTATCTAAGTATTTGC
.........................................................................................(((((((........)))))))..(((..(((((........(((((((......................)))))))...)))))...........((......)))))...................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTAAG........................................................2255.000.0022.0026.00-3.004.00---------------
............................................................................................................................................................................CCACCTTTTTTTTTTATAG...........................................................1939.000.0018.005.00-8.008.00---------------
.............................................................................GCCCCACCTCCCCCATTCACATTGCTTTGGATGGATTGCACTGGGGTCAGTCTTGGGAGGATCTGTTT.........................................................................................................6814.004.00-------4.00------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTAAT........................................................223.000.00-3.00------------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTATT........................................................223.000.00-2.00--1.00---------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTTTATAG.....................................................252.000.00---2.00----------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGTT...................................................212.000.00--1.00-------1.00---------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTTGAC......................................................222.000.00--2.00-----------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTATG........................................................222.000.00-2.00------------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTAAG.........................................................202.000.00---2.00----------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTTTTATAG....................................................262.000.00----1.00---1.00-----------
...................................................................................................................................................................................TTTTTTTTCTTTTTTGGGGCGG.................................................222.000.00--2.00-----------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTAA.........................................................212.000.00-2.00------------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGGACC.................................................232.000.00--2.00-----------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTAAT........................................................212.000.001.001.00------------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTATAG.......................................................232.000.00---1.001.00---------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTAAA........................................................222.000.002.00-------------------
............................................................................................................................................................................CCACCTTTTTTTTTTCATAG..........................................................202.000.00---1.001.00---------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTCAG........................................................222.000.001.00--1.00----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTCCAG.......................................................212.000.001.00--1.00----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTTTCCAG....................................................241.000.00----1.00---------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGGATG.................................................231.000.00--1.00-----------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTATAA.......................................................231.000.00----1.00---------------
...................................................................................................................................................................................TTTTTTTTCTTTTTTGGGTT...................................................201.000.00--1.00-----------------
...........................................................................................................................................................................CCCACCTTTTTTTTTTCTTTATG........................................................231.000.00-1.00------------------
................................................................................................................................................................................CTTTTTTTTTTCTTTTTTGGGGC...................................................231.000.00-----1.00--------------
...................................................................................................................................................................................TTTTTTTTCTTTTTTGGGTAG..................................................211.000.00-----1.00--------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTTTTAATG....................................................251.000.00-1.00------------------
..............................................................................................CACATTGCTTTGGATGGATTGCAC....................................................................................................................................2411.001.00--------------1.00-----
..............................................................................................................................................................................ACCTTTTTTTTTTCTTGGG.........................................................191.000.00----------1.00---------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGAGAG.................................................231.000.00-----1.00--------------
............................................................................................................................................................................CCACCTTTTTTTTTTATAT...........................................................191.000.00---1.00----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTTTCCA.....................................................231.000.00---1.00----------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGCC...................................................2221.000.50--1.00-----------------
............................................................................................................................................................................CCACCTTTTTTTTTTACAG...........................................................191.000.00---1.00----------------
.........................................................................................................................................................................TCCCCACCTTTTTTTTTTG..............................................................191.000.001.00-------------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGGAGG.................................................241.000.00--1.00-----------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGCATGG................................................241.000.00--1.00-----------------
..........................................................................................................................................................................CCCCACCTTTTTTTTTTCTTTTTACAG.....................................................271.000.00---1.00----------------
...........................................................................................ATTCACATTGCTTTGTTTT............................................................................................................................................191.000.00--------1.00-----------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTAAGG........................................................221.000.00-1.00------------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGGTG..................................................221.000.00--1.00-----------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGTT...................................................221.000.00--1.00-----------------
.....................................................................................................................................................................................TTTTTTCTTTTTTGGGAGAT.................................................201.000.00---1.00----------------
.....................................................................................................................................................................................TTTTTTCTTTTTTGGGCTGG.................................................201.000.00--1.00-----------------
................................................................................................................................................................................CTTTTTTTTTTCTTTTTTGGGACG..................................................241.000.00--1.00-----------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGCAG..................................................2311.001.00--1.00-----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTTTCG......................................................221.000.00----1.00---------------
....................................................................................................................................................................................TTTTTTTCTTTTTTGGGCAGAGAC..............................................241.000.00-----1.00--------------
.............................................................................................................................................................................CACCTTTTTTTTTTCAAAG..........................................................191.000.00--------1.00-----------
................................................................................................................................................................................CTTTTTTTTTTCTTTTTTGGCCTG..................................................241.000.00--1.00-----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTCGG.......................................................211.000.00--1.00-----------------
...................................................................................................................................................................................TTTTTTTTCTTTTTTGGGGCG..................................................211.000.00--1.00-----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTTTCTGG....................................................241.000.00--1.00-----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTCGAG......................................................221.000.00--1.00-----------------
................................................................................................................................................................................CTTTTTTTTTTCTTTTTTGGGCC...................................................231.000.00--1.00-----------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTTTTTTAG....................................................251.000.00---1.00----------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGTTTT.................................................231.000.00--1.00-----------------
............................................................................................................................................................................CCACCTTTTTTTTTTATAA...........................................................191.000.00-1.00------------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTCATG.........................................................201.000.00---1.00----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTGGG........................................................201.000.00-----1.00--------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGCAGC.................................................2411.001.00-----1.00--------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTCTG..........................................................201.000.001.00-------------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGGGGG.................................................241.000.00--1.00-----------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTTTTTCAG....................................................251.000.00-1.00------------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTCCTG.......................................................221.000.00----1.00---------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTTTATAG.....................................................241.000.00----1.00---------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTAGGG.......................................................211.000.00-----1.00--------------
............................................................................................................................................................................CCACCTTTTTTTTTTCTTTATA........................................................221.000.00--1.00-----------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGC....................................................2030.670.67--0.67-----------------
..............................................................................................................................................................................ACCTTTTTTTTTTCTTTTTTGG......................................................2220.500.50--0.50-----------------
.................................................................................................................................................................................TTTTTTTTTTCTTTTTTGGGC....................................................2120.500.50--0.50-----------------
.............................................................................................................................................................................CACCTTTTTTTTTTCTTTTTTG.......................................................2250.400.40---0.200.20---------------
..................................................................................................................................................................................TTTTTTTTTCTTTTTTGGGCC...................................................2130.330.67--0.33-----------------
...................................................................................................................................................................................TTTTTTTTCTTTTTTGGGC....................................................1940.250.25--0.25-----------------
....................................................................................................................................................................................TTTTTTTCTTTTTTGGGCGGTG................................................2260.170.17-----0.17--------------
....................................................................................................................................................................................TTTTTTTCTTTTTTGGGC....................................................1860.170.17-----0.17--------------

Antisense strand
GCCTGTTGAGAAAGGGAAAATTAATTTTGCTCCAAAGGTGGTGCCTTAAGCCCCCTCTGTGTACTATGCTCCCTTCCGCCCCACCTCCCCCATTCACATTGCTTTGGATGGATTGCACTGGGGTCAGTCTTGGGAGGATCTGTTTCTGATATTCTTTTTCTCCTCCCCCTCCCCACCTTTTTTTTTTCTTTTTTGGGCAGAAGAATCATTTTCACTTTATAGTGATCAAACATCTTATCTAAGTATTTGC
.........................................................................................(((((((........)))))))..(((..(((((........(((((((......................)))))))...)))))...........((......)))))...................................................
.........................................................................................90............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
..........................................................................................................................................................TTTTTCTCCTCCCCCTACA............................................................................. 195.000.00------5.00-------------
...............................................................................................................................................................................CCTTTTTTTTTTCTTTTTTGGG..................................................... 222.000.00---------2.00----------
...........................................................................CCGCCCCACCTCCCCCCGGA........................................................................................................................................................... 201.000.00------------1.00-------
..........................................CAGAGGGGGCTTAAGGC............................................................................................................................................................................................... 1711.001.00-------------1.00------
........................................................................CTTCCGCCCCACCTCCCCCCAT............................................................................................................................................................ 221.000.00-----------1.00--------
.................................................................GTGGGGCGGAAGGGAGCAT...................................................................................................................................................................... 1920.500.50---------------0.50----
..................................................................GTGGGGCGGAAGGGAGCA...................................................................................................................................................................... 1830.330.33----------------0.33---
.......................................................................................................................................................GAGGGGGAGGAGAAAAAGAA............................................................................... 2040.250.25-----------------0.25--
..................................................................GGGGCGGAAGGGAGCA........................................................................................................................................................................ 1650.200.20------------------0.20-
...................................................................GGGGCGGAAGGGAGC........................................................................................................................................................................ 1590.110.11-------------------0.11