ID: uc004bhn.2_intron_3_0_chr9_116172689_r
GENE: POLE3(1)
chr9:116172639-116172946-


(1)
AGO2.ip 		(11)
B-CELL 		(2)
BRAIN 		(10)
BREAST 		(27)
CELL-LINE 		(2)
CERVIX 		(2)
FIBROBLAST 		(3)
HEART 		(4)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCAGGGCACCATGGGAAACGGACGGAAGCTCCATTGAGCCAAATAAGTTGGTGAGAAGGTTCCCGACGCGGCGATGGCGAGAAGCAGAGAAATGGACCTGGGGAGGGGCGTGCGGGGTGCGGTAGGGTTGGATGGAAGCCTTGGCGGGCCAAAACCACTGCGGCTTCAAAATCCGGATGCGCCGGTATTTGAGGCGGAGGCGGGGCTGTGGGGGGAGGAGGGAGGCTATGGCGCTCAGAGCACTGTGGGACACTGTAGGCCACGTGGGGCGGAACGGAAACCTCGCAGGGTCAGACCGTAGCGACGCG
...........................................................................................(((..(((....)))..)))(((((((.((.(((((((.......))))))).)).)))....(((((((.((((((((..((((.....))))..))))))))......((((((((((..............))))))).)))...)))..))))....))))....................................................
.......................................................................................88........................................................................................................................................................................258................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................................................................................................GAGCACTGTGGGACACTG.....................................................18130.0030.0028.00----------1.00----------------------------------------------------1.00------------
............................................................................................TGGACCTGGGGAGGGGCG......................................................................................................................................................................................................1817.007.005.00----------------1.00-------1.00---------------------------------------------------
..........................................ATAAGTTGGTGAGAAGGT........................................................................................................................................................................................................................................................1814.004.00--1.00---2.00---1.00------------------------------------------------------------------
................................................................................GAAGCAGAGAAATGGACCTGGGG.............................................................................................................................................................................................................2314.004.00-4.00---------------------------------------------------------------------------
.................................TTGAGCCAAATAAGTTGG.................................................................................................................................................................................................................................................................1813.003.002.00-------------------------------------------------------------1.00--------------
..................................................................................AGCAGAGAAATGGACCTG................................................................................................................................................................................................................1813.003.00-------1.00--------------------------------------------------1.00-------1.00----------
.............................................................................................GGACCTGGGGAGGGGCGTG....................................................................................................................................................................................................1913.003.00-3.00---------------------------------------------------------------------------
..............................................GTTGGTGAGAAGGTTCCCGA..................................................................................................................................................................................................................................................2013.003.00--3.00--------------------------------------------------------------------------
..............................................................................................................................GTTGGATGGAAGCCTTGGCGGG................................................................................................................................................................2212.002.00-2.00---------------------------------------------------------------------------
.........................................AATAAGTTGGTGAGAAGGT........................................................................................................................................................................................................................................................1912.002.00----2.00------------------------------------------------------------------------
.................................................................................................................................................................................................................................................ACTGTGGGACACTGTAGGC................................................1912.002.00--1.00-----------------------------------------------------1.00--------------------
..............................................................................................................................................................................................................................................................................................AGGGTCAGACCGTAGCGAC...1912.002.00--1.00--------------------------1.00-----------------------------------------------
........................................................................................GAAATGGACCTGGGGAGGGG........................................................................................................................................................................................................2012.002.00-1.001.00--------------------------------------------------------------------------
............GGGAAACGGACGGAAGCTC.....................................................................................................................................................................................................................................................................................1912.002.00---2.00-------------------------------------------------------------------------
..........................................................................................AATGGACCTGGGGAGGGGCG......................................................................................................................................................................................................2012.002.00-1.00-------------------1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................GCGGAACGGAAACCTCGC......................1812.002.00------2.00----------------------------------------------------------------------
....................................................................................CAGAGAAATGGACCTGGGGA............................................................................................................................................................................................................2012.002.00------------2.00----------------------------------------------------------------
...................................................................................................................................................................................................................................ATGGCGCTCAGAGCACTGTGGGACACTG.....................................................2812.002.00--2.00--------------------------------------------------------------------------
.......ACCATGGGAAACGGACGG...........................................................................................................................................................................................................................................................................................1812.002.00-------1.00-------------------------------1.00-------------------------------------
.......................................................................................................................................................................................................................................................................GTGGGGCGGAACGGAAACCT.........................2011.001.00---------------------------------------------------1.00-------------------------
.....................................................................................................................................................................................................................................GGCGCTCAGAGCACTGTGGGACACTGTAGGCC...............................................3211.001.00----------------------------------------------------------------------1.00------
..............................................................................................................................................................................................................................AGGCTATGGCGCTCAGAG....................................................................1811.001.00------------------------------------1.00----------------------------------------
.........................................................................................................................................................................................................................................................ACACTGTAGGCCACGTGGGGCGGA...................................2411.001.00-----------------------1.00-----------------------------------------------------
..............................................GTTGGTGAGAAGGTTCCCG...................................................................................................................................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................................................ACTGTGGGACACTGTAGGCCC..............................................211.000.00-----------------------------------------------------------1.00-----------------
...................................................................................GCAGAGAAATGGACCTGGT..............................................................................................................................................................................................................191.000.00---------------------------------------------------------1.00-------------------
............................................................................GCGAGAAGCAGAGAAAT.......................................................................................................................................................................................................................1711.001.00--------------------1.00--------------------------------------------------------
............................................................................................................................................................................................................................................AGAGCACTGTGGGACACTGTAGGG................................................241.000.00-----1.00-----------------------------------------------------------------------
.....................................................................................AGAGAAATGGACCTGGGGAGGGGCG......................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------1.00--------
....................................................................................................................................................................................................................................................GTGGGACACTGTAGGCC...............................................1711.001.00----1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................GGGGCGGAACGGAAAC...........................1611.001.00----1.00------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CTGTGGGACACTGTAGGC................................................1811.001.00---1.00-------------------------------------------------------------------------
................................ATTGAGCCAAATAAGTTGGTGAGAAGGTTCCCGACG................................................................................................................................................................................................................................................3611.001.00------------------------------1.00----------------------------------------------
................................................................................................................................................................................ATGCGCCGGTATTTGAGGCGGAGGCGG.........................................................................................................2711.001.00-----1.00-----------------------------------------------------------------------
....GGCACCATGGGAAACGGACGG...........................................................................................................................................................................................................................................................................................2111.001.00------1.00----------------------------------------------------------------------
.........................................AATAAGTTGGTGAGAAGG.........................................................................................................................................................................................................................................................1811.001.00-------1.00---------------------------------------------------------------------
.................ACGGACGGAAGCTCCATTGAGCCAA..........................................................................................................................................................................................................................................................................2511.001.00------------------------------------------1.00----------------------------------
........................................................................................................................................................................................................................................................GACACTGTAGGCCACGTGGGGC......................................2211.001.00----------1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................AGGAGGGAGGCTATGAAAA..........................................................................191.000.00-------------1.00---------------------------------------------------------------
................................................................................................................................................................................................................................................CACTGTGGGACACTGTAGGC................................................2011.001.00-----------------------------------------------1.00-----------------------------
..................................................................................................................................................................................................CGGAGGCGGGGCTGTGTGAG..............................................................................................201.000.00-------------------------------------------------1.00---------------------------
......................CGGAAGCTCCATTGAGCCAAATAAGTTGG.................................................................................................................................................................................................................................................................2911.001.00-------------------------------------------1.00---------------------------------
....................................................................................................................................................................................................................................................................CACGTGGGGCGGAACGGAAA............................2011.001.00--------------------------1.00--------------------------------------------------
.................................................................................AAGCAGAGAAATGGACCTGGGG.............................................................................................................................................................................................................2211.001.00-------1.00---------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................GCAGGGTCAGACCGTAGCGAC...2111.001.00-1.00---------------------------------------------------------------------------
.................................................................................................................GGGGTGCGGTAGGGTTTA.................................................................................................................................................................................181.000.00-----------------------------------1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................ACGGAAACCTCGCAGGGTC................1911.001.00----1.00------------------------------------------------------------------------
..............GAAACGGACGGAAGCTCCATTGAGCCAAA.........................................................................................................................................................................................................................................................................2911.001.00-------------------------------------1.00---------------------------------------
............................................................................................................................................................................................................................................................................................GCAGGGTCAGACCGTAGCGACGC.2311.001.00----------------------------------------------------1.00------------------------
....................................................................................................................................................................................................................................................GTGGGACACTGTAGGC................................................1611.001.00---1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................................CAGAGCACTGTGGGACACTGTA...................................................2211.001.00-----------1.00-----------------------------------------------------------------
........................................................................................................................................................................................................................................GCTCAGAGCACTGTGGGACA........................................................2011.001.00---------------------------------------------------------------------1.00-------
...............................................................................................................................................................................................................................................GCACTGTGGGACACTGTAGG.................................................2011.001.00-1.00---------------------------------------------------------------------------
...................................................................................GCAGAGAAATGGACCTGGG..............................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------1.00-----------
..AGGGCACCATGGGAAACGGACG............................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------1.00-----------------------
.........................AAGCTCCATTGAGCCAAATAAGTTGG.................................................................................................................................................................................................................................................................2611.001.00---1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................AGGCGGGGCTGTGGGGGGAGGAGGGAGG...................................................................................2811.001.00---------1.00-------------------------------------------------------------------
............................................AAGTTGGTGAGAAGGCGA......................................................................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00---------------------
...........................................................................................................................................................................................................................................CAGAGCACTGTGGGACACTGTAGGC................................................2511.001.00-----1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................................GAGCACTGTGGGACACTGT....................................................1911.001.00-----------------------------------------------------------------------1.00-----
..........ATGGGAAACGGACGGAAGCTC.....................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------1.00----
.............................................................................................................................................................................................................................................................................CGGAACGGAAACCTCGCAGGGTCAGA.............2611.001.00--------1.00--------------------------------------------------------------------
............................................................................GCGAGAAGCAGAGAAACT......................................................................................................................................................................................................................181.000.00----------------------------------------------1.00------------------------------
...................................................TGAGAAGGTTCCCGACGCG..............................................................................................................................................................................................................................................1911.001.00----------------------1.00------------------------------------------------------
.............GGAAACGGACGGAAGCTCCATTGAGCC............................................................................................................................................................................................................................................................................2711.001.00------------------1.00----------------------------------------------------------
..............................................................................................................................................................................................................................................................................................AGGGTCAGACCGTAGCGA....1811.001.00-1.00---------------------------------------------------------------------------
................AACGGACGGAAGCTC.....................................................................................................................................................................................................................................................................................1521.001.00---1.00-------------------------------------------------------------------------
..................................................................................AGCAGAGAAATGGACCTGG...............................................................................................................................................................................................................1911.001.00----------------1.00------------------------------------------------------------
..........................................................................................................................................................................................................................................................CACTGTAGGCCACGTGGGGCGGAA..................................2411.001.00--------------------------------------------------1.00--------------------------
...........................................................................................................................................................................................................................................................................................CGCAGGGTCAGACCGTAGCGAC...2211.001.00---------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................CGGGGCTGTGGGGGGAGGAGGGCA....................................................................................241.000.00--1.00--------------------------------------------------------------------------
..............................................................................................................................GTTGGATGGAAGCCTTGG....................................................................................................................................................................1811.001.00-1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................................TCAGAGCACTGTGGGACACTGTAGGC................................................2611.001.00--------1.00--------------------------------------------------------------------
........................................................................................................................................................................................................CGGGGCTGTGGGGGGAGGGTA.......................................................................................211.000.00--------------------------------------------1.00--------------------------------
..............GAAACGGACGGAAGCTCCATTGA...............................................................................................................................................................................................................................................................................2311.001.00-----------------1.00-----------------------------------------------------------
..............................................................................................................................................................................................................................................................................................AGGGTCAGACCGTAGCGACGCGGGC251.000.00-1.00---------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................TCGCAGGGTCAGACCGTAG.......1911.001.00--------------------------------------1.00--------------------------------------
.......................................................................................................................................................................................................GCGGGGCTGTGGGGGGAGGAGGGAGGCC.................................................................................281.000.00--------------1.00--------------------------------------------------------------
..................................................................................................................GGGTGCGGTAGGGTT...................................................................................................................................................................................1511.001.00------------------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................GGAGGAGGGAGGCTATATAG...........................................................................201.000.00-------------1.00---------------------------------------------------------------
............................................................................................................................................................................................................................................AGAGCACTGTGGGACACTGTAGGCCACGT...........................................2911.001.00-----1.00-----------------------------------------------------------------------
...............................................................................................................................................................................................AGGCGGAGGCGGGGCAAGC..................................................................................................191.000.00---------1.00-------------------------------------------------------------------
.............GGAAACGGACGGAAGCTC.....................................................................................................................................................................................................................................................................................1811.001.00---1.00-------------------------------------------------------------------------
...........................................TAAGTTGGTGAGAAGGTTCC.....................................................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------1.00---------
.................................................................................................................................................................................................................................................ACTGTGGGACACTGTAGG.................................................1811.001.00----1.00------------------------------------------------------------------------
...................................................................................................................................................................................................GGAGGCGGGGCTGTGTCA...............................................................................................181.000.00--------------------------------1.00--------------------------------------------
.............................................................CCCGACGCGGCGATGGCGAGAAGCAGAG...........................................................................................................................................................................................................................2811.001.00-------------------------------------------------------------1.00---------------
..........................................................................................AATGGACCTGGGGAGGGGC.......................................................................................................................................................................................................1911.001.00-------------------1.00---------------------------------------------------------
........................................................AGGTTCCCGACGCGGCGA..........................................................................................................................................................................................................................................1811.001.00---1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................CGGAACGGAAACCTCGCAG....................1911.001.00------------------------------------------------------1.00----------------------
...................................................................................................................................................................................................GGAGGCGGGGCTGTGTCGG..............................................................................................191.000.00---------------------------------1.00-------------------------------------------
................................................................................GAAGCAGAGAAATGGACCTGG...............................................................................................................................................................................................................2111.001.00-----------------------------------------1.00-----------------------------------
...........................................................................................................................................................................................................................................................ACTGTAGGCCACGTGGGGCGGAACGG...............................2611.001.00------------------------------------------------1.00----------------------------
..........................................................................................AATGGACCTGGGGAGGG.........................................................................................................................................................................................................1711.001.00-1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................GGGGCGGAACGGAAACCT.........................1811.001.00----------------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................................TGGGACACTGTAGGCCACG............................................1911.001.00---------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................CGGGGCTGTGGGGGGAGGAGGGAA....................................................................................241.000.00--1.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................GGCTGTGGGGGGAGGATCGC.....................................................................................201.000.00-----1.00-----------------------------------------------------------------------
............................................................................GCGAGAAGCAGAGAAATGGACCTGGG..............................................................................................................................................................................................................2611.001.00-------------------------------1.00---------------------------------------------
...................................................................................................................................................................................................GGAGGCGGGGCTGTGTGG...............................................................................................181.000.00-------------------------------------------------------------------------1.00---
..........................................................GTTCCCGACGCGGCGGTGG.......................................................................................................................................................................................................................................191.000.00---------------------------------------------------------------1.00-------------
.....................................................................GGCGATGGCGAGAAGCGT.............................................................................................................................................................................................................................181.000.00---------------------------------------------1.00-------------------------------
............................................................................................................................................................................................................................................................CTGTAGGCCACGTGGGGCGGAAC.................................2311.001.00----------------------------1.00------------------------------------------------
.........................................................................................................................................................................................................................................................ACACTGTAGGCCACGTGGGGCG.....................................2211.001.00------------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................AGGCGGGGCTGTGGGGGGAGGAGGGAGGCT.................................................................................3011.001.00--------------1.00--------------------------------------------------------------
........................................................................................................................................................................................................CGGGGCTGTGGGGGGAG...........................................................................................1730.670.67--------------------------------------------------------------------------0.67--
...........................................TAAGTTGGTGAGAAGGT........................................................................................................................................................................................................................................................1720.500.50---0.50-------------------------------------------------------------------------
...........................................TAAGTTGGTGAGAAGGTT.......................................................................................................................................................................................................................................................1820.500.50----0.50------------------------------------------------------------------------
................................................................................................................................................................................................................................................................AGGCCACGTGGGGCGGAA..................................1820.500.50---------------------------------------------------------------------------0.50-
..........................................................................................................................................................................................................................................TCAGAGCACTGTGGGAC.........................................................1720.500.50--------0.50--------------------------------------------------------------------
............................................AAGTTGGTGAGAAGGT........................................................................................................................................................................................................................................................1650.400.40---0.40-------------------------------------------------------------------------
..AGGGCACCATGGGAAAC.................................................................................................................................................................................................................................................................................................1730.330.33-------------------0.33---------------------------------------------------------
...................................................................................................................................................................................................GGAGGCGGGGCTGTGGG................................................................................................1760.170.17-----0.17-----------------------------------------------------------------------
.....................................................................................................................................................................................................................................................TGGGACACTGTAGGC................................................1570.140.14----------------------------------------------------------------------------0.14
.................................................................................................................................................................................................................GGGGGGAGGAGGGAGGC..................................................................................1780.120.12--------------------0.12--------------------------------------------------------
..............................................................................................................................................................................................................................................AGCACTGTGGGACACTG.....................................................1790.110.11---------0.11-------------------------------------------------------------------

Antisense strand
GCAGGGCACCATGGGAAACGGACGGAAGCTCCATTGAGCCAAATAAGTTGGTGAGAAGGTTCCCGACGCGGCGATGGCGAGAAGCAGAGAAATGGACCTGGGGAGGGGCGTGCGGGGTGCGGTAGGGTTGGATGGAAGCCTTGGCGGGCCAAAACCACTGCGGCTTCAAAATCCGGATGCGCCGGTATTTGAGGCGGAGGCGGGGCTGTGGGGGGAGGAGGGAGGCTATGGCGCTCAGAGCACTGTGGGACACTGTAGGCCACGTGGGGCGGAACGGAAACCTCGCAGGGTCAGACCGTAGCGACGCG
...........................................................................................(((..(((....)))..)))(((((((.((.(((((((.......))))))).)).)))....(((((((.((((((((..((((.....))))..))))))))......((((((((((..............))))))).)))...)))..))))....))))....................................................
.......................................................................................88........................................................................................................................................................................258................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR189782SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029129(GSM416758)
SW480. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR040009(GSM532894)
G727T. (cervix)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................................................................................ACCGGCGCATCCGGATTTTGAAGCCGCAGTGG.......................................................................................................................... 3212.002.00----2.00------------------------------------------------------------------------
.....................................................................................................................................................................................................................................GGCGCTCAGAGCACTGTGGGTA......................................................... 221.000.00----------------------------------1.00------------------------------------------
.............................ACCAACTTATTTGGCTCAATGGA................................................................................................................................................................................................................................................................ 2311.001.00------------------------------------------------------------1.00----------------
.................ACGGACGGAAGCTCCAGCG................................................................................................................................................................................................................................................................................ 191.000.00----------------------------------------1.00------------------------------------
.............................................................................................................................................................CGGATTTTGAAGCCGCAG..................................................................................................................................... 1811.001.00----1.00------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................CGCGTCGCTACGGTCTGACCCTGC 2411.001.00---------------------------1.00-------------------------------------------------
....................................................................................................................................................................................TCCGCCTCAAATACCGGC.............................................................................................................. 1811.001.00---1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................TCCGCCTCAAATACCGG.............................................................................................................. 1711.001.00---1.00-------------------------------------------------------------------------