ID: uc004bgk.2_intron_1_0_chr9_115648897_r.3p
GENE: (2)
chr9:115648847-115649096-


(12)
B-CELL 		(2)
BRAIN 		(12)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(4)
LIVER 		(2)
OTHER 		(12)
SKIN 		(1)
XRN.ip

Sense strand
GGAGTTTAAGGCTGCAGTGAGCCAGGATTGTGGCACTACACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTCTAAAAAAAGAGAGAGAGAGAGAGAGTAAGAAGGAAGGGTCCCCTAAGAACTCTCCAGAGACTCAGCTAATGGGGAGTGAGGCAGGGACAGCAAGGCACTCCGGAGTAACCTCTGTCCCTTCCACAGGAAAGGTGTTCGTCATACTGCAGCTGTCCTTGGCTCTGACCGGCGTGGTG
..............................................................................................((((((....(((........)))....))))))......((((.....)))).......................................................................................................
............................................................................................93.....................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR343335SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................CTCCAGAGACTCAGCGAAG..........................................................................................................1927.000.00---2.001.00--3.002.00-2.001.00--2.00----1.00-1.001.00----1.00--1.00---1.001.00--1.00-1.00--1.001.00-1.00-1.00-1.00---
.............................................................................................................................CTCCAGAGACTCAGCGAA...........................................................................................................1818.000.00--6.004.00-4.00--1.00--1.00-------------1.001.00---------------------------
.............................................................................................................................CTCCAGAGACTCAGCGA............................................................................................................174.000.00----1.00----------2.00--1.00-----------------------------------
.................................................................................................AGTAAGAAGGAAGGGAC........................................................................................................................................172.000.00-2.00----------------------------------------------------
.......AAGGCTGCAGTGAGCCAGGAT..............................................................................................................................................................................................................................2101.001.00---------------------------------------1.00--------------
..........................................................................................GAGAGAGAGTAAGAAGGGC.............................................................................................................................................191.000.00-----------------1.00------------------------------------
..........................................................................................GAGAGAGAGTAAGAAGAAGG............................................................................................................................................201.000.00--------------------------------1.00---------------------
.......AAGGCTGCAGTGAGCCAGGACTGG...........................................................................................................................................................................................................................241.000.00-1.00----------------------------------------------------
..............................................................................................................................TCCAGAGACTCAGCTAAGT.........................................................................................................191.000.00--------------------1.00---------------------------------
.............................................................................................................................CTCCAGAGACTCAGCG.............................................................................................................161.000.00----1.00-------------------------------------------------
..............................................CCTGGGCAACAGAGTAAGACTCTGGCTG................................................................................................................................................................................281.000.00----------------------------------------------------1.00-
...............................................................................................................................................TGGGGAGTGAGGCAGGTTCT.......................................................................................201.000.00-----------------------------------------------1.00------
..............................................CCTGGGCAACAGAGTAAGACTCGGCC..................................................................................................................................................................................261.000.00-1.00----------------------------------------------------
....................................................................................................................................................AGTGAGGCAGGGACAAGGG...................................................................................191.000.00-------------------------------------1.00----------------
................................................TGGGCAACAGAGTAAGACTTTGA...................................................................................................................................................................................231.000.00-----------------------1.00------------------------------
..........................................................................................GAGAGAGAGTAAGAAGGGCG............................................................................................................................................201.000.00----------------------------1.00-------------------------
...................................................................................................................CCTAAGAACTCTCCATCTG....................................................................................................................191.000.00----------------1.00-------------------------------------
......................................................................TCTCTAAAAAAAGAGGAGA.................................................................................................................................................................191.000.00-----------------------------------------1.00------------
....................................................................................GAGAGAGAGAGAGAGTAAGAC.................................................................................................................................................211.000.00-----------------------------1.00------------------------

Antisense strand
GGAGTTTAAGGCTGCAGTGAGCCAGGATTGTGGCACTACACTCCAGCCTGGGCAACAGAGTAAGACTCTGTCTCTAAAAAAAGAGAGAGAGAGAGAGAGTAAGAAGGAAGGGTCCCCTAAGAACTCTCCAGAGACTCAGCTAATGGGGAGTGAGGCAGGGACAGCAAGGCACTCCGGAGTAACCTCTGTCCCTTCCACAGGAAAGGTGTTCGTCATACTGCAGCTGTCCTTGGCTCTGACCGGCGTGGTG
..............................................................................................((((((....(((........)))....))))))......((((.....)))).......................................................................................................
............................................................................................93.....................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR343335SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343336SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................GCACTACACTCCAGCCTACAG..................................................................................................................................................................................................... 213.000.00-3.00----------------------------------------------------
...........................................................................................................................................................GTGCCTTGCTGTCCCTG.............................................................................. 1722.502.50---------2.50--------------------------------------------
...........................................................................AAAAAAAGAGAGAGAGAGAGAGAGTTTTG.................................................................................................................................................. 292.000.00------------2.00-----------------------------------------
..........GCTGCAGTGAGCCAGGATTGGG.......................................................................................................................................................................................................................... 222.000.002.00-----------------------------------------------------
.........................................................................................................................................................................................................................CTGCAGCTGTCCTTGACCT.............. 192.000.00-------------2.00----------------------------------------
...................................CTACACTCCAGCCTGGGCAAGAGG............................................................................................................................................................................................... 242.000.002.00-----------------------------------------------------
..........................................................................TAAAAAAAGAGAGAGTAG.............................................................................................................................................................. 181.000.00------1.00-----------------------------------------------
.........................................................................................................................................................................................................................CTGCAGCTGTCCTTGGCTCTGACATG....... 261.000.00-1.00----------------------------------------------------
....................................TACACTCCAGCCTGGGCAACAGTTGA............................................................................................................................................................................................ 261.000.00------------------------------------------1.00-----------
...................................CTACACTCCAGCCTGGGCACGGG................................................................................................................................................................................................ 231.000.00-1.00----------------------------------------------------
...........................................CAGCCTGGGCAACAGAGTAATGTC....................................................................................................................................................................................... 241.000.00---------------------------------------------1.00--------
...................................................................................AGAGAGAGAGAGAGAGTAGCC.................................................................................................................................................. 211.000.001.00-----------------------------------------------------
...................................CTACACTCCAGCCTGGGCAACACGCT............................................................................................................................................................................................. 261.000.001.00-----------------------------------------------------
..........................................................................TAAAAAAAGAGAGAGAGAGAGAGTG....................................................................................................................................................... 251.000.00------1.00-----------------------------------------------
................................GCACTACACTCCAGCCTGATT..................................................................................................................................................................................................... 211.000.00------------------------1.00-----------------------------
................................GCACTACACTCCAGCCTGGGCATCTG................................................................................................................................................................................................ 261.000.00---------------------------------------------------1.00--
....................................TACACTCCAGCCTGGGCAACAGATAAA........................................................................................................................................................................................... 271.000.00-------------------------------------------------1.00----
...................................CTACACTCCAGCCTGGGCAAGCAT............................................................................................................................................................................................... 241.000.001.00-----------------------------------------------------
........................................CTCCAGCCTGGGCAACAGAGTAACGG........................................................................................................................................................................................ 261.000.00-1.00----------------------------------------------------
....................................TACACTCCAGCCTGGGCTTTG................................................................................................................................................................................................. 211.000.00-------------------------------1.00----------------------
..........GCTGCAGTGAGCCAGGATAGCG.......................................................................................................................................................................................................................... 221.000.001.00-----------------------------------------------------
...................................CTACACTCCAGCCTGGGCAACGTT............................................................................................................................................................................................... 241.000.001.00-----------------------------------------------------
.........................................................................CTAAAAAAAGAGAGATAAT.............................................................................................................................................................. 191.000.00------1.00-----------------------------------------------
..................................ACTACACTCCAGCCTGGGCAACACGTC............................................................................................................................................................................................. 271.000.001.00-----------------------------------------------------
.............................................................................................................................................................GGGACAGCAAGGCACATGG.......................................................................... 191.000.00---------------------------------1.00--------------------
................................GCACTACACTCCAGCCTGGGCAATTTT............................................................................................................................................................................................... 271.000.00-1.00----------------------------------------------------
...................................CTACACTCCAGCCTGGGCAACAGAGTAACGCC....................................................................................................................................................................................... 321.000.00-1.00----------------------------------------------------
...................................CTACACTCCAGCCTGGGCAACGCT............................................................................................................................................................................................... 241.000.00-1.00----------------------------------------------------
.........................................................................CTAAAAAAAGAGAGAGAGAGGG........................................................................................................................................................... 221.000.001.00-----------------------------------------------------
..........................................................................TAAAAAAAGAGAGAGAGAGAGAAAAA...................................................................................................................................................... 261.000.001.00-----------------------------------------------------
......................................................................................................................................................................................................................................TGGCTCTGACCGGCGTCCA. 191.000.00------------------------------------1.00-----------------
....................................................................................GAGAGAGAGAGAGAGTAAAAG................................................................................................................................................. 211.000.00------1.00-----------------------------------------------
...............AGTGAGCCAGGATTGATAG........................................................................................................................................................................................................................ 191.000.00----1.00-------------------------------------------------
.........................................................GAGTAAGACTCTGTCTCCGAC............................................................................................................................................................................ 211.000.001.00-----------------------------------------------------
...................................CTACACTCCAGCCTGGGCACGCG................................................................................................................................................................................................ 231.000.001.00-----------------------------------------------------
...................................................................................TTCTTACTCTCTCTCTCTCTCT................................................................................................................................................. 2270.140.14-----------------------------------------------------0.14