ID: uc004bfz.2_intron_0_0_chr9_114982654_r.3p
GENE: (13)
chr9:114982604-114982853-


(1)
AGO2.ip 		(1)
AGO3.ip 		(2)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(2)
HELA 		(3)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
ATGTTTCTGATTTACTGTTAAAAGTTGCTGAGCTCAGTTTTTGGAGATATCATTTATGCCTGCCTGTTCCCTTATGACAGTGAGGCCTTCTTTGGCTCCACCTAGTATGATAATCATGGGTTCTGTTTTAGTTGATGAGAAGTGGCTCCTATGAATGCCTCTGCTCAATTTCTTTTTATTTTACTTTATTTTATTTTTAGGGGTCTCGCCAACTCCTGGGCTCAAGTGATTCTCCTGCTTCCACCTCCCC
.....................................................................................................................((((...((...((....((((.((.(((..........))).)).))))....))....))...))))................................................................
...................................................................................................................116.........................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189786SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTTAG.......................................................32110.000.0055.0031.002.009.0013.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTA..............................................................25184.0084.002.003.0034.0022.0023.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTATTTAG....................................................3571.000.0043.0026.00--2.00------------------------------------------
.....................................................................................................................................................................CAATTTCTTTTTATTTTACTTTATTTTATTTTTAG..................................................35128.0028.0016.0010.00-1.001.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTTAG............................................................2722.000.002.00-3.0011.006.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTTAG.................................................................22420.000.7510.757.00-0.751.50------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTAT........................................................31116.0016.00--16.00--------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTAG........................................................3112.000.008.004.00---------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTAC........................................................3111.000.00--11.00--------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACCTTA..............................................................259.000.00--4.003.002.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTCA..............................................................258.000.00--3.004.001.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTAG.........................................................308.000.002.005.00-1.00-------------------------------------------
.........................................................................................................................................................................TTCTTTTTATTTTACTTTATTTTATTTTTAG..................................................3117.007.003.001.00-1.002.00------------------------------------------
...............TGTTAAAAGTTGCTGAGCTCAGTTTTTGGAGATATCATTTATGCCTGCCTGTTCCCTTATGACAGTGAGGCCTTCTTTGGCTCCACC....................................................................................................................................................8717.007.00-------7.00---------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTATTTTTAG..................................................2917.007.002.00--5.00-------------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATCG......................................................216.000.00---4.002.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTCTA..............................................................2516.002.00--3.002.001.00------------------------------------------
......................................................................................................................................................................AATTTCTTTTTATTTTACTTTATTTTATTTTTAG..................................................3415.005.002.001.00-1.001.00------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTTAG..................................................2815.005.001.004.00---------------------------------------------
........GATTTACTGTTAAAAGTTGC..............................................................................................................................................................................................................................2015.005.00--------2.003.00-------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTATTTTATTTTTAG..................................................3315.005.003.002.00---------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTCAGG.................................................285.000.00-----2.003.00----------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTCAG.......................................................324.000.00-2.00-1.001.00------------------------------------------
.....................................................................................................................................................................CAATTTCTTTTTATTTTTAG.................................................................204.000.001.003.00---------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTATTTTT....................................................3514.004.001.003.00---------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTCAT........................................................314.000.00--4.00--------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTTAT.......................................................324.000.001.001.00-1.001.00------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTTCAG................................................294.000.00---3.001.00------------------------------------------
........................................................................................................................TTCTGTTTTAGTTGATG.................................................................................................................1714.004.00------------4.00----------------------------------
..........................................................................................TTTGGCTCCACCTAGTATGATAATCAT.....................................................................................................................................2713.003.00----------3.00------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTA...............................................................243.000.00-1.00-2.00-------------------------------------------
........................................................................................................................................................................................................................TGGGCTCAAGTGATTCTCCTTA............223.000.00-------------3.00---------------------------------
........................................................................................................................................................................TTTCTTTTTATTTTACTTTATTTTATTTTTAG..................................................3213.003.001.001.00--1.00------------------------------------------
...............TGTTAAAAGTTGCTGAGCTCAG.....................................................................................................................................................................................................................2213.003.00--------------3.00--------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTCATT..................................................273.000.00-----3.00-----------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTTAGC................................................293.000.00-----3.00-----------------------------------------
...................................................................................................................................................................................TTTACTTTATTTTATTCTTG...................................................202.000.00----2.00------------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTATTTTATC.......................................................282.000.00-----2.00-----------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTTGT.......................................................232.000.00--2.00--------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTTGAC................................................292.000.00-----2.00-----------------------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTTTGGC.................................................272.000.00-----2.00-----------------------------------------
...........................................................................................TTGGCTCCACCTAGTATGATAATCA......................................................................................................................................2512.002.00---------------2.00-------------------------------
.........................TGCTGAGCTCAGTTTTTGGAG............................................................................................................................................................................................................2112.002.00---------------1.00----------------1.00--------------
.....................................................................................................................................................................CAATTTCTTTTTATTTTACTTTATTTTATTTTAG...................................................342.000.001.001.00---------------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTATTTTATTTC.....................................................302.000.00-----2.00-----------------------------------------
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTATTTTTAG..................................................3012.002.001.001.00---------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTTAGGGG...............................................3112.002.00-----2.00-----------------------------------------
.....................................................................................................................................................................CAATTTCTTTTTATTTTACTTTATTTTTAG.......................................................302.000.00-1.00-1.00-------------------------------------------
........GATTTACTGTTAAAAGTTG...............................................................................................................................................................................................................................1912.002.00---------2.00-------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTATTTTATT..................................................292.000.00-----2.00-----------------------------------------
.....................AAGTTGCTGAGCTCAGTTTTTGGAG............................................................................................................................................................................................................2512.002.00-----1.001.00----------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACT.................................................................2212.002.00---1.001.00------------------------------------------
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTATTTCTAG..................................................302.000.00--1.00-1.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTA...................................................................2012.002.001.001.00---------------------------------------------
.................................................................................................................................................................................ATTTTACTTTATTTTATTTCTTG..................................................232.000.00----2.00------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTATG..................................................282.000.00---1.001.00------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTCTAG.................................................................222.000.00---2.00-------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTGG...................................................271.000.00-----1.00-----------------------------------------
......................AGTTGCTGAGCTCAGTTTGGAG..............................................................................................................................................................................................................221.000.00-----1.00-----------------------------------------
................................................................................................................................................................................TATTTTACTTTATTTTATTTTCCG..................................................241.000.00----1.00------------------------------------------
........................................................................................................................................................................TTTCTTTTTATTTTACTCACT.............................................................211.000.00-----1.00-----------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTATTTTATTTTC....................................................311.000.00-----1.00-----------------------------------------
............................................................................................................................GTTTTAGTTGATGAGAAGT...........................................................................................................1911.001.00------------------------------1.00----------------
........................................................................................................................TTCTGTTTTAGTTGATGAGAAGTGGCTCCCACG.................................................................................................331.000.00--1.00--------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTATTTAT....................................................351.000.001.00----------------------------------------------
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTTTTG......................................................261.000.00-1.00---------------------------------------------
.........................................................................................................................................................AATGCCTCTGCTCAATTTCTTTTTATTTTTAG.................................................................321.000.001.00----------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATATCG.........................................................301.000.001.00----------------------------------------------
...................................................................................................................................................................................TTTACTTTATTTTATTTTTAGGGGCC.............................................261.000.00-----1.00-----------------------------------------
....................................................................................................................................................................TCAATTTCTTTTTATTTTACTTTATTTTATTTAG....................................................341.000.001.00----------------------------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTTTAGGGG...............................................2911.001.00-----1.00-----------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATCG......................................................231.000.00---1.00-------------------------------------------
.........................................................................................................................................................AATGCCTCTGCTCAATTTCTTTTTATTTTAT..................................................................311.000.00--1.00--------------------------------------------
..............................................................................................................................................................CTCTGCTCAATTTCTTTTTATTTTACCTTA..............................................................301.000.00--1.00--------------------------------------------
..................TAAAAGTTGCTGAGCTCAGTTTTTGGAGATACC.......................................................................................................................................................................................................331.000.00--1.00--------------------------------------------
..................................................................................................................................................................................TTTTACTTTATTTTATTTTTAACG................................................241.000.00-1.00---------------------------------------------
...........................................................................................................................TGTTTTAGTTGATGAGAAGTGGC........................................................................................................2311.001.00--------1.00--------------------------------------
...................................................................................................................................TTGATGAGAAGTGGCTCCTAT..................................................................................................2111.001.00---------------------------------------------1.00-
.........................................................................................................TATGATAATCATGGGTTCTGTTTTAGT......................................................................................................................2711.001.00-------------------------------1.00---------------
......................................................................................................................................................................AATTTCTTTTTATTTTACTTTATCT...........................................................251.000.00------1.00----------------------------------------
.............................................................................................................................................................CCTCTGCTCAATTTCTTTTTATTTTACTTTA..............................................................3111.001.00----1.00------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTTAGGGGTC.............................................3311.001.001.00----------------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTAAG.......................................................241.000.001.00----------------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATTTTGTGT.................................................261.000.00-----1.00-----------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTGGC.................................................281.000.00-----1.00-----------------------------------------
.................TTAAAAGTTGCTGAGCTC.......................................................................................................................................................................................................................1811.001.00--------------------1.00--------------------------
.........ATTTACTGTTAAAAGTTGCT.............................................................................................................................................................................................................................2011.001.00--------1.00--------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTCTAT............................................................271.000.00---1.00-------------------------------------------
......................................................................................................TAGTATGATAATCATGGGTTCTG.............................................................................................................................2311.001.00------------------------1.00----------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTAGG.................................................2811.001.00-----1.00-----------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTA................................................................2311.002.00---1.00-------------------------------------------
....................................................................................................................................................................TCAATTTCTTTTTATTTTACTTTA..............................................................2411.001.00----1.00------------------------------------------
.....................................................................................................................................................................CAATTTCTTTTTATTTTACTTTTAG............................................................251.000.00-1.00---------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTCTAG.......................................................321.000.001.00----------------------------------------------
........................................................................................................................TTCTGTTTTAGTTGATGAGAAGTGGCTCCCAC..................................................................................................321.000.00--1.00--------------------------------------------
..................................................................................................................................................................................TTTTACTTTATTTTATTTTTAGGG................................................2411.001.00------1.00----------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTGCCC................................................291.000.00-----1.00-----------------------------------------
.............................................................................................................................TTTTAGTTGATGAGAAGTGGCTCCCCTG.................................................................................................281.000.00--1.00--------------------------------------------
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTATC.......................................................251.000.00-----1.00-----------------------------------------
........................................................................................................................................................................TTTCTTTTTATTTTACTTTATTTTATTTTCAG..................................................321.000.00--1.00--------------------------------------------
...................................................................................................................ATGGGTTCTGTTTTAGTTGATGA................................................................................................................2311.001.00------1.00----------------------------------------
.............................................................................................................ATAATCATGGGTTCTGTTTTAGTTGACG.................................................................................................................2811.001.00-----1.00-----------------------------------------
.............................................................................................................................TTTTAGTTGATGAGAAGCGGC........................................................................................................211.000.00--1.00--------------------------------------------
...............................................................................................................................................................................................................GCCAACTCCTGGGCTCAAGTGATT...................2411.001.00-----------------------------1.00-----------------
........................................................................................................................................................................................................................TGGGCTCAAGTGATTCTTCAA.............211.000.00---------------------1.00-------------------------
....................AAAGTTGCTGAGCTCAGTTTTGG...............................................................................................................................................................................................................231.000.00------1.00----------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATTTTCTAG.................................................261.000.00---1.00-------------------------------------------
.....................AAGTTGCTGAGCTCAGTTTGG................................................................................................................................................................................................................211.000.00------1.00----------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTATCTAG....................................................3511.0016.00----1.00------------------------------------------
...........TTACTGTTAAAAGTTGCTGAGCTCAGTTTTTG...............................................................................................................................................................................................................3211.001.00-----------1.00-----------------------------------
................................................................................TGAGGCCTTCTTTGGCTCCACCTAG.................................................................................................................................................2511.001.00-----1.00-----------------------------------------
....................................................................................................................................................................................................TTAGGGGTCTCGCCAACTCCTGGGC.............................2511.001.00-----1.00-----------------------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTTTAGGGGC..............................................3011.001.00-----1.00-----------------------------------------
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTATTTTCAG..................................................301.000.00--1.00--------------------------------------------
..GTTTCTGATTTACTGTTAAA....................................................................................................................................................................................................................................2011.001.00------------------------------------1.00----------
....................................................................................................................TGGGTTCTGTTTTAGTTGATGAGAAGTGGCT.......................................................................................................3111.001.00-------------------------1.00---------------------
.....................................................................................................................................................................CAATTTCTTTTTATTTTACTTTATTTTAG........................................................291.000.001.00----------------------------------------------
........................................................................................................................TTCTGTTTTAGTTGATGAGAAGTGGCTCCCAT..................................................................................................321.000.00--1.00--------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTAGGGGCC.............................................321.000.00-----1.00-----------------------------------------
.............................................................................................................ATAATCATGGGTTCTGTTTTAG.......................................................................................................................2211.001.00------------------------------------------1.00----
...................................................................................................ACCTAGTATGATAATCATGGG..................................................................................................................................2111.001.00--------------------------------------------1.00--
..................................................................................................................................................................................TTTTACTTTATTTTATTTTTAGGGGTCCCG..........................................301.000.00------1.00----------------------------------------
........................................................................................................................TTCTGTTTTAGTTGATGAGA..............................................................................................................2011.001.00----------------------------------------1.00------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTTAA.......................................................321.000.00-1.00---------------------------------------------
...........................................................................................................................................................................................ATTTTATTTTTAGGGGTCTCG..........................................2111.001.00-----1.00-----------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTGG........................................................221.000.00-1.00---------------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTTTTG......................................................251.000.001.00----------------------------------------------
...................................................................................................................................................................................................TTTAGGGGTCTCGCCAACTCCTGGGCTCAAG........................3111.001.00--1.00--------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATACT.....................................................251.000.00-----1.00-----------------------------------------
......................................................TATGCCTGCCTGTTCTGCG.................................................................................................................................................................................191.000.00---------------------------------------1.00-------
.................................................................................................................................AGTTGATGAGAAGTGGCTCC.....................................................................................................2011.001.00----------------------------1.00------------------
......................................................TATGCCTGCCTGTTCCCTTATGAC............................................................................................................................................................................2411.001.00-----------------------1.00-----------------------
..................................................................................................................................................................................TTTTACTTTATTTTATTTTTAGGGGTCTCGC.........................................3111.001.00------------------1.00----------------------------
...............................................................................................................................TTAGTTGATGAGAAGTGGC........................................................................................................1911.001.00------1.00----------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTGAGG.......................................................201.000.00------1.00----------------------------------------
........................................................................................................................TTCTGTTTTAGTTGATGAGAAGCGGC........................................................................................................261.000.00--1.00--------------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTATTTTTTTTG................................................311.000.00--1.00--------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTATA..................................................281.000.00-----1.00-----------------------------------------
............................................................................ACAGTGAGGCCTTCTTTGGCTCCACC....................................................................................................................................................2611.001.00--1.00--------------------------------------------
.................................................................................................................................AGTTGATGAGAAGTGGCTCCTATGAA...............................................................................................2611.001.00--------1.00--------------------------------------
............................................................TGCCTGTTCCCTTATGACAGTGAGGC....................................................................................................................................................................2611.001.00-------------------------------------1.00---------
........................................................................................................................................................................................................................TGGGCTCAAGTGATTCTCCGTC............221.000.00-----------------1.00-----------------------------
.........................................................................................................................................................................TTCTTTTTATTTTACTTTATTTTATC.......................................................261.000.00-----1.00-----------------------------------------
......................................................................................................................................................................................ACTTTATTTTATTTTTAGGGGTCCCGC.........................................271.000.00------1.00----------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTCAG........................................................211.000.00----1.00------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTAG..................................................2721.001.00---1.00-------------------------------------------
................................................................................................................ATCATGGGTTCTGTTTTAGTTGACGAG...............................................................................................................271.000.00-----1.00-----------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTCCTG.................................................281.000.00-----1.00-----------------------------------------
.....................AAGTTGCTGAGCTCAGTTTTTGGAGA...........................................................................................................................................................................................................2611.001.00------1.00----------------------------------------
....................................................................................................................TGGGTTCTGTTTTAGTTGACGAG...............................................................................................................231.000.00-----1.00-----------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTATTTTTAG.......................................................281.000.00-1.00---------------------------------------------
.................................................................................................................................................................................ATTTTACTTTATTTTATTTTTAGGGGTC.............................................2811.001.00-----1.00-----------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTTAG............................................................231.000.00-----1.00-----------------------------------------
...................................................................................................................ATGGGTTCTGTTTTAGTTGATGAG...............................................................................................................2411.001.00------1.00----------------------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTCATG..................................................261.000.00---1.00-------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTCAT.................................................281.000.00----1.00------------------------------------------
......................AGTTGCTGAGCTCAGTTTCTGG..............................................................................................................................................................................................................221.000.00------1.00----------------------------------------
......................................................................................................................................................................AATTTCTTTTTATTTTACTTTATTTT..........................................................2611.001.001.00----------------------------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTGTGG................................................291.000.00------1.00----------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTTA........................................................311.000.001.00----------------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTATTTTTAGGGGTC.............................................3411.001.00---1.00-------------------------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTTCTAA.................................................271.000.00----1.00------------------------------------------
...................................................................................................................ATGGGTTCTGTTTTAGTTGATGAGAAGTGGCTC......................................................................................................3311.001.00----------1.00------------------------------------
........................................................................................................................................GAGAAGTGGCTCCTATGAATGC............................................................................................2211.001.00-------------------1.00---------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTAGGGG.....................................................341.000.001.00----------------------------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTTCAG..................................................261.000.00----1.00------------------------------------------
.............................................GATATCATTTATGCCTGCCTGTTC.....................................................................................................................................................................................2411.001.00-----------1.00-----------------------------------
...................................................................................................................................................................................................................ACTCCTGGGCTCAAGTGATTCTCGG..............251.000.00-----------------1.00-----------------------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTTTTAG................................................291.000.00---1.00-------------------------------------------
..........................................................................................................................................................ATGCCTCTGCTCAATTTCTTTTTATTT.....................................................................2711.001.00-----1.00-----------------------------------------
.........................................................................................................................TCTGTTTTAGTTGATGAGAAGTGGCTCCT....................................................................................................2911.001.00--------------------------1.00--------------------
.......................................................................................................................................................................................CTTTATTTTATTTTTAGGGGTCTCGCC........................................2711.001.00-----1.00-----------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATCAC.....................................................221.000.00---1.00-------------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATTTTCAGG.................................................261.000.00-----1.00-----------------------------------------
....................................................................................................................................................................TCAATTTCTTTTTATTTTTAG.................................................................211.000.00-1.00---------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTTTATTTTTAGGGGCC.............................................3311.002.00-----1.00-----------------------------------------
..................................................................................................................................................................................TTTTACTTTATTTTATTTCACT..................................................221.000.00--1.00--------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTAATT............................................................271.000.00-1.00---------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTTTATTAG.....................................................341.000.001.00----------------------------------------------
...........................................................................................................................TGTTTTAGTTGATGAGAAGTGGCTCC.....................................................................................................2611.001.00------1.00----------------------------------------
....................................................................................................................................................................TCAATTTCTTTTTATTTTACTTTATTTTTAG.......................................................311.000.00---1.00-------------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTCCT............................................................231.000.00-----1.00-----------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATTTCATG..................................................251.000.00---1.00-------------------------------------------
................GTTAAAAGTTGCTGAGCTCAGT....................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00---
.......................................................................................................................................................................ATTTCTTTTTATTTTACTTTATTTTATTTAG....................................................311.000.001.00----------------------------------------------
..................................................................................AGGCCTTCTTTGGCTCCACCCAG.................................................................................................................................................231.000.00------1.00----------------------------------------
........................................................................................................................TTCTGTTTTAGTTGATGAGAAGTGGCTCCCCT..................................................................................................321.000.00--1.00--------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTATTCTAT........................................................311.000.00--1.00--------------------------------------------
............................................................................................................................................................................TTTTTATTTTACTTTATTATG.........................................................211.000.00---1.00-------------------------------------------
.........................................................................................................................................................................TTCTTTTTATTTTACTTTATTTTATTTTAG...................................................301.000.00---1.00-------------------------------------------
......................................................................................................................................................................................ACTTTATTTTATTTTTCAAG................................................201.000.00---1.00-------------------------------------------
.......................................................................................................................................................................................................GGGGTCTCGCCAACTCCTGGGCTCAAGTG......................2911.001.00---------------------------1.00-------------------
........................................................................................................................TTCTGTTTTAGTTGATGAGAAGTGGCTCCT....................................................................................................3011.001.00-----------------------------------------1.00-----
.............................................................................................................ATAATCATGGGTTCTGTTTTAGTTGACGAG...............................................................................................................3011.001.00--1.00--------------------------------------------
.......................................................................................................................................................................ATTTCTTTTTATTTTACCTTA..............................................................211.000.00-----1.00-----------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTTC..............................................................251.000.00--1.00--------------------------------------------
..............................................................................................................................................................CTCTGCTCAATTTCTTTTTATTTTACTTTTAG............................................................321.000.00--1.00--------------------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATTTTTAGGGGTCTCG..........................................3311.001.00-1.00---------------------------------------------
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTATTTATT...................................................291.000.00-----1.00-----------------------------------------
.....TCTGATTTACTGTTAAAAGTT................................................................................................................................................................................................................................2111.001.00----------------1.00------------------------------
...............................................................................................................................................................................TTATTTTACTTTATTTTATTTTTCAG.................................................261.000.00---1.00-------------------------------------------
......................................................................................................................................................ATGAATGCCTCTGCTCACT.................................................................................191.000.00----------------------------------1.00------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTATTT................................................................2311.002.001.00----------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTACTTGA..............................................................251.000.00--1.00--------------------------------------------
......................................................................................................................................................................AATTTCTTTTTATTTTACTTTA..............................................................2211.001.00---1.00-------------------------------------------
........................................................................................................................................................................................................................TGGGCTCAAGTGATTCTCCTGCAA..........241.000.00---------------------------------1.00-------------
.............................................................................................................................................................................TTTTATTTTACTTTATTTTATTTTCAG..................................................271.000.00-----1.00-----------------------------------------
.............................................................................................................ATAATCATGGGTTCTGTTTTAGTTGA...................................................................................................................2611.001.00----------------1.00------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTTTAA.................................................................2240.750.750.500.25---------------------------------------------
...................................................................................................................................................................CTCAATTTCTTTTTATTTT....................................................................1940.750.75-0.75---------------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTATT.......................................................2440.750.75-----0.75-----------------------------------------
.........................................................................................................................................................................TTCTTTTTATTTTACTTTATTTTATT.......................................................2630.670.67-----0.67-----------------------------------------
.............................................................................................................................................................CCTCTGCTCAATTTCT.............................................................................1670.570.57--0.57--------------------------------------------
.................................................................................................................................................................................ATTTTACTTTATTTTATTTTTAG..................................................2320.500.50------0.50----------------------------------------
.........................................................................................................................................................................................................................GGGCTCAAGTGATTCTCCTGCTTCCACCTCC..3120.500.50-------------------0.50---------------------------
..............................................................................................................................................................................TTTATTTTACTTTATTTTATTTTTAG..................................................2620.500.50-0.50---------------------------------------------
..........................................................................................................................................................................................................................GGCTCAAGTGATTCTCCTGCTTCCA.......2530.330.33----------------------------------------------0.33
..........................................................................................................................................................................TCTTTTTATTTTACTTTATTTTATT.......................................................2530.330.33-----0.33-----------------------------------------
...........................................................................................................................................................................CTTTTTATTTTACTTTATTTTATTT......................................................2540.250.25--0.25--------------------------------------------
.....................................................................................................................................GATGAGAAGTGGCTC......................................................................................................1540.250.25----------------------------------------------0.25
...................................................................................................................................................................................TTTACTTTATTTTATTTTTAG..................................................2150.200.20---0.20-------------------------------------------
....................................................................................................................................................................................TTACTTTATTTTATTTTTAG..................................................2060.170.17---0.17-------------------------------------------

Antisense strand
ATGTTTCTGATTTACTGTTAAAAGTTGCTGAGCTCAGTTTTTGGAGATATCATTTATGCCTGCCTGTTCCCTTATGACAGTGAGGCCTTCTTTGGCTCCACCTAGTATGATAATCATGGGTTCTGTTTTAGTTGATGAGAAGTGGCTCCTATGAATGCCTCTGCTCAATTTCTTTTTATTTTACTTTATTTTATTTTTAGGGGTCTCGCCAACTCCTGGGCTCAAGTGATTCTCCTGCTTCCACCTCCCC
.....................................................................................................................((((...((...((....((((.((.(((..........))).)).))))....))....))...))))................................................................
...................................................................................................................116.........................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189786SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..........................................................................TGACAGTGAGGCCTTGAA.............................................................................................................................................................. 181.000.00--------------------------------------1.00--------
....................................................................................................................................................................................................................CTCCTGGGCTCAAGTGATTCCGG............... 231.000.00------------------1.00----------------------------
.................................................................................................................................................................................................................GGAGAATCACTTGAGCCCAGGAGTTG............... 2601.001.00----------------------1.00------------------------
....................................................................................................................................................................................................................CTCCTGGGCTCAAGTGATTCTCCTGCTCTCC....... 311.000.00------1.00----------------------------------------
.........................................................................................................................................................................................................................GCAGGAGAATCACTTGAGCCC............ 2101.001.00-----------------------------------1.00-----------