ID: uc004bfe.1_intron_34_0_chr9_114182401_r.3p
GENE: KIAA0368(16)
chr9:114182351-114182600-


(1)
AGO2.ip 		(4)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(5)
HELA 		(3)
LIVER 		(1)
OTHER 		(26)
SKIN 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
AAAGACTTAAACAACATGATTAAAGATCTTGAACAAATGATTTATTTAATTTAGATACACGTTTATTAAAATGTCACCTTAGAATTTTGAATTGTTTACAGTTAGGAAGACTCATCTTGATTGGAATGAATGGCTGGTAATTGATTTTTTTTTTCCTTTTTCGGATCGGGGTGGTCTGTGTATGTTTACACATGAAATAGCCTGAAGTTCAAGTTCGACAAGTGGCTGTGAAATTTGCCAGTACGGTGTT
......................................................................................................................((..(((((.(((........))).)))))..)).........((((((.....))))))........................................................................
.....................................................................................................................118.........................................................178......................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
..........ACAACATGATTAAAGATCTTGAACAAATGATT................................................................................................................................................................................................................32145.0045.0022.0020.00---------------1.00---------1.00--------------------1.00-------------------
...........CAACATGATTAAAGATCTTGAACAAATGATT................................................................................................................................................................................................................31118.0018.0010.003.00----------------1.00-----1.00--------1.00-----------------1.00-------1.00--------
..........................................................................................................................GGAATGAATGGCTGGTAGTAG...........................................................................................................2110.000.00--2.00---3.00---------2.00--1.00--------1.00---------------------1.00-----------------
..........................................................................................................................GGAATGAATGGCTGGTAATTG...........................................................................................................2118.008.00--8.00-----------------------------------------------------------------
..........................................................................................................................GGAATGAATGGCTGGTAATTGA..........................................................................................................2217.007.00--7.00-----------------------------------------------------------------
.................................................................................................................ATCTTGATTGGAATGAATGGCTGGTTTGA............................................................................................................294.000.00---------------------1.00------------------------1.00--1.00----1.00-------------
..........ACAACATGATTAAAGATCTTGAACAAATGATTT...............................................................................................................................................................................................................3313.003.003.00-------------------------------------------------------------------
..........................................................................................................................GGAATGAATGGCTGGTAG..............................................................................................................183.000.00----------------------1.00--------------------1.00-------------1.00----------
..........................................................................................................................GGAATGAATGGCTGGTTTGA............................................................................................................203.000.00--1.00-----------1.00-------------------------------------1.00---------------
...............................................................................................................................GAATGGCTGGTAATTGA..........................................................................................................1713.003.00--3.00-----------------------------------------------------------------
............AACATGATTAAAGATCTTGAACAAATGAT.................................................................................................................................................................................................................2912.002.002.00-------------------------------------------------------------------
......................................................................................................TAGGAAGACTCATCTTGTTGG...............................................................................................................................211.000.00--------------------------------1.00-----------------------------------
..........................................................................................................................GGAATGAATGGCTGGTTTG.............................................................................................................191.000.00--1.00-----------------------------------------------------------------
................................................................................................................................................TTTTTTTTTTCCTTTTTCGGTGTG..................................................................................241.000.00-----1.00--------------------------------------------------------------
............................................................................................................................................................................................................................AGTGGCTGTGAAATTTGCCAGT........2211.001.00------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................TGAAGTTCAAGTTCGACAAGTGGCTGT.....................2711.001.00-------------------------1.00------------------------------------------
................................................................................................................................................................................................TGAAATAGCCTGAAGTTCAAGTTCG.................................2511.001.00-------------------------------------------------------1.00------------
............................................................................................................................................................................................................AAGTTCAAGTTCGACAAGT...........................1911.001.00-----------------------------------1.00--------------------------------
..................................................................................................................................................................................................................AAGTTCGACAAGTGG.........................1511.001.00--------------1.00-----------------------------------------------------
............................................................................................................................................................................................................................AGTGGCTGTGAAATTTGCCAGTACGG....2611.001.00-------------1.00------------------------------------------------------
......................................................................................................................................................................................................................TCGACAAGTGGCTGTGAAATTTGC............2411.001.00----------------------------------1.00---------------------------------
..........................................................................................................................................AATTGATTTTTTTTTTCCTTTCTTT.......................................................................................251.000.00------------1.00-------------------------------------------------------
..........................................................................................................AAGACTCATCTTGATTTTTA............................................................................................................................201.000.00--------------------------------------------------------------1.00-----
.............................................................................................................................................................................................................................GTGGCTGTGAAATTTGCCAGTACGGTG..2711.001.00--1.00-----------------------------------------------------------------
.....................................................................................................................TGATTGGAATGAATGGCTGGTAATT............................................................................................................2511.001.00--1.00-----------------------------------------------------------------
..........................................................................................................AAGACTCATCTTGATTGGAATG..........................................................................................................................2211.001.00---------------------------------------------1.00----------------------
...................................................................................................................................................................................................................AGTTCGACAAGTGGCTGTGAAATTTGC............2711.001.00---------------------------------------------------------------1.00----
..........................................................................................................................GGAATGAATGGCTGGTAATTGAA.........................................................................................................2311.007.00----1.00---------------------------------------------------------------
........................................................................................................................................................................................................CCTGAAGTTCAAGTTCGACAAGTGGCTGTGA...................3111.001.00----1.00---------------------------------------------------------------
..............................................................................................................................................................................................CATGAAATAGCCTGAAGTTCAAGTTCGACAAGT...........................3311.001.00-----------------------1.00--------------------------------------------
.........AACAACATGATTAAAGATCTTGAACAAATGATT................................................................................................................................................................................................................3311.001.00-1.00------------------------------------------------------------------
............................................................................................................................................TTGATTTTTTTTTTCCTTGGCC........................................................................................221.000.00-----1.00--------------------------------------------------------------
.............................................................................................................................................................................................................AGTTCAAGTTCGACAAGTGGCTGTG....................2511.001.00-----------1.00--------------------------------------------------------
.................................................................................................................................................TTTTTTTTTCCTTTTTCGGACTA..................................................................................231.000.00--------1.00-----------------------------------------------------------
..............................................................................................................................................................................................................GTTCAAGTTCGACAAGTGGCTGT.....................2311.001.00-------1.00------------------------------------------------------------
..........ACAACATGATTAAAGATCTTGAACAAATGAT.................................................................................................................................................................................................................3111.001.00-1.00------------------------------------------------------------------
..............................................................................................................................................................................................................................TGGCTGTGAAATTTGC............1631.001.00-------------------0.33---------------------------------------------0.330.33-
.............................................................................................................................................TGATTTTTTTTTTCCTTTTGCGG......................................................................................231.000.00-----1.00--------------------------------------------------------------
......................................................................................................TAGGAAGACTCATCTTGCTG................................................................................................................................201.000.00---1.00----------------------------------------------------------------
.................................................................................................................................................................................................................CAAGTTCGACAAGTGGCTGTGA...................2211.001.00-----------------------------------------------1.00--------------------
..................................................................................................................................................TTTTTTTTCCTTTTTCGTAG....................................................................................201.000.00----------------------------------------------------------------1.00---
..........................................................................................................................GGAATGAATGGCTGGAG...............................................................................................................171.000.00-------------------------------1.00------------------------------------
.................................................................................................................ATCTTGATTGGAATGAATGGCTGGTAATTGA..........................................................................................................3111.001.00-----------------1.00--------------------------------------------------
..........ACAACATGATTAAAGATCTTGAACAAATG...................................................................................................................................................................................................................2911.001.00----------------------------------------------------------1.00---------
....................................................................................................................................................................................................................................TGAAATTTGCCAGTACG.....1711.001.00---------------1.00----------------------------------------------------
...........................................................................................................................................................................................................GAAGTTCAAGTTCGACAAGTGGCTGT.....................2611.001.00---------------1.00----------------------------------------------------
........................................................................................................................................................................................................CCTGAAGTTCAAGTTCGACAAG............................2211.001.00-----------------------------------------------------1.00--------------
...................................................................................................................................................TTTTTTTCCTTTTTCGGCAGG..................................................................................211.000.00--------1.00-----------------------------------------------------------
..........................................................................................................................GGAATGAATGGCTGGTATGTA...........................................................................................................211.000.00-------------------------------------1.00------------------------------
....................................................................................................................................GCTGGTAATTGATTTGGA....................................................................................................181.000.00--------------------------------------------1.00-----------------------
............................................................................................................................................................................................................................AGTGGCTGTGAAATTTGCCAGTACGGTG..2811.001.00-------------1.00------------------------------------------------------
............................................................................................................................................................................................................AAGTTCAAGTTCGACAAGTGGCTGTG....................2611.001.00-----------------------------1.00--------------------------------------
...............................................................................TAGAATTTTGAATTGTTTACAGTTAGGA...............................................................................................................................................2811.001.00-------1.00------------------------------------------------------------
...........CAACATGATTAAAGATCTTGAACAAA.....................................................................................................................................................................................................................2611.001.00--------------------------------------1.00-----------------------------
.........................................................................................................................................................TCCTTTTTCGGATCGGGGTGG............................................................................2111.001.00-1.00------------------------------------------------------------------
...................................................................................................................................................................................................................AGTTCGACAAGTGGCTGTGAAATTTGCC...........2811.001.00--------------------1.00-----------------------------------------------
.................................................................................................................................................TTTTTTTTTCCTTTTTCGGCTCG..................................................................................231.000.00------------1.00-------------------------------------------------------
........................................................................................................................................................................................................................GACAAGTGGCTGTGAAATTTGCCAGTACGGTGT.3311.001.00--------------------------1.00-----------------------------------------
..................................................................................................................................................................................................................AAGTTCGACAAGTGGCTGT.....................1911.001.00------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................AAGTTCGACAAGTGGCTGTGA...................2111.001.00--------------------------------------------------------1.00-----------
...........................................................................................................................................................................................................................AAGTGGCTGTGAAATTTGCC...........2011.001.00---------1.00----------------------------------------------------------
..........................................................................................................................GGAATGAATGGCTGGAGT..............................................................................................................181.000.00----1.00---------------------------------------------------------------
....................................................................................................................................................................ATCGGGGTGGTCTGTCCAT...................................................................191.000.00------------------------------------------------------------1.00-------
.............................................................................CTTAGAATTTTGAATTGTTTACAGTTAG.................................................................................................................................................2811.001.00-------------------------------------------------------------1.00------
.........................................................................................................................TGGAATGAATGGCTGGTAATTGA..........................................................................................................2311.001.00------------------------------------------1.00-------------------------
......................................................................................................................................................................................................................TCGACAAGTGGCTGTGAA..................1811.001.00---------------------------------------1.00----------------------------
........................................................................................................................................................................................................................GACAAGTGGCTGTGAAATTTGC............2211.001.00---------1.00----------------------------------------------------------
.................................CAAATGATTTATTTAATTGTT....................................................................................................................................................................................................211.000.00-----------------------------------------1.00--------------------------
........................GATCTTGAACAAATGATT................................................................................................................................................................................................................1830.330.33------------------0.33-------------------------------------------------
............................................................................................................................AATGAATGGCTGGTA...............................................................................................................1590.110.11-------0.11------------------------------------------------------------

Antisense strand
AAAGACTTAAACAACATGATTAAAGATCTTGAACAAATGATTTATTTAATTTAGATACACGTTTATTAAAATGTCACCTTAGAATTTTGAATTGTTTACAGTTAGGAAGACTCATCTTGATTGGAATGAATGGCTGGTAATTGATTTTTTTTTTCCTTTTTCGGATCGGGGTGGTCTGTGTATGTTTACACATGAAATAGCCTGAAGTTCAAGTTCGACAAGTGGCTGTGAAATTTGCCAGTACGGTGTT
......................................................................................................................((..(((((.(((........))).)))))..)).........((((((.....))))))........................................................................
.....................................................................................................................118.........................................................178......................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................................................................................CTGTGTATGTTTACATAAA........................................................ 191.000.00----------------------------------------1.00---------------------------
...............................................................................................................................................................................CTGTGTATGTTTACATATC........................................................ 191.000.00---1.00----------------------------------------------------------------
...............................................................................................................................................................................CTGTGTATGTTTACATCAG........................................................ 191.000.00---1.00----------------------------------------------------------------
........................................................................................................GGAAGACTCATCTTGCT................................................................................................................................. 171.000.00----------1.00---------------------------------------------------------
...............................................................................................................................................................................CTGTGTATGTTTACATATA........................................................ 191.000.00---1.00----------------------------------------------------------------
........................................................................................................GGAAGACTCATCTTGACTG............................................................................................................................... 191.000.00----------1.00---------------------------------------------------------
...............................................................................................................................................................................................................TTCAAGTTCGACAAGAG.......................... 171.000.00-----------1.00--------------------------------------------------------
...............................................................................................GTCTTCCTAACTGTAA........................................................................................................................................... 1640.250.25-------------------------------------------------------------------0.25