ID: uc004bfe.1_intron_0_0_chr9_114124450_r.3p
GENE: KIAA0368(50)
chr9:114124400-114124649-


(1)
AGO2.ip
(1)
B-CELL
(2)
BREAST
(11)
CELL-LINE
(2)
CERVIX
(4)
HEART
(1)
HELA
(4)
LIVER
(1)
OTHER
(11)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AATTAGGTTTTGAGACACATATTGACAGTATGTAATGATAATTATATACTGATCTGTTATCAAGAGGTTGCTTTGCATTTATTTGGGGGATAGGATATTTTTAAATTTTTTTCTTGCTTGTTCTATAAGGATTCTTTGGGGTTTTTTCTTTTTGCTTTGTTTTTTGTTTTTTTTGTTTTTGTTTTTTTTTTTTCATGCAGAATCTAAACAGTGGGAATGTTTGACATCTGAATGCAGAGTGCTCCTAATT
...................................................................................................................((.........((((((((....)))))))).......))...............................................................................................
....................................................................................................101.............................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532930(GSM532930)
G702T. (cervix)
GSM532929(GSM532929)
G702N. (cervix)
SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
.........................................................................................................TTTTTTTCTTGCTTGGCG...............................................................................................................................1832.000.0029.003.00-----------------------------------------
.............................................................................................................................................TTTTTTCTTTTTGCTTGGCG.........................................................................................2030.000.0030.00------------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCTGCG....................................................2810.000.006.002.002.00----------------------------------------
.........................................................................................................................................................GCTTTGTTTTTTGTTTTTTTTACTC........................................................................259.000.006.003.00-----------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCGCG.....................................................278.000.005.002.001.00----------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCTGCG....................................................265.000.002.003.00-----------------------------------------
..............................................................................................................................................................GTTTTTTGTTTTTTTTGTTTTCGGC...................................................................254.000.003.001.00-----------------------------------------
.......................................................................................................................................................................................................................AATGTTTGACATCTGAATGCAGAG...........2414.004.00------2.00------------------------------1.001.00----
.................................................................................................................................................................................................................AGTGGGAATGTTTGACAT.......................1814.004.00---4.00---------------------------------------
...........................................................................................................................................................................TTTGTTTTTGTTTTTTTTTTTTCGCG.....................................................264.000.002.002.00-----------------------------------------
..................................................................................................................................ATTCTTTGGGGTTTTTTCTTTTCGC...............................................................................................253.000.003.00------------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTTTTC.......................................................313.000.001.002.00-----------------------------------------
..................................................................................................................................ATTCTTTGGGGTTTTTTCTTTCTGC...............................................................................................253.000.002.001.00-----------------------------------------
..........................................................................................................................................................CTTTGTTTTTTGTTTTTTTTACTC........................................................................243.000.003.00------------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTCT..........................................................283.000.001.002.00-----------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTTCGGC...................................................................243.000.001.002.00-----------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCGCG.....................................................253.000.003.00------------------------------------------
.....................................................................................................................................................................GTTTTTTTTGTTTTTGTTTTGGTC.............................................................243.000.003.00------------------------------------------
..............................................................AGAGGTTGCTTTGCATTTATTTGGGGGACAGG............................................................................................................................................................322.000.002.00------------------------------------------
................................................................................................................................................................TTTTTGTTTTTTTTGTTTTTCGC...................................................................232.000.00-2.00-----------------------------------------
......................................................................................GGGATAGGATATTTTTAAATTTTTTTCTCGC.....................................................................................................................................312.000.00--2.00----------------------------------------
..................................................................................................................................ATTCTTTGGGGTTTTTTCTTTTTGCC..............................................................................................262.000.002.00------------------------------------------
.........................................................................................................................................................................................................................TGTTTGACATCTGAATGCAGAGTGC........2512.002.00---------2.00---------------------------------
............................................................................................................................................................TTGTTTTTTGTTTTTTTTGTTTCGAG....................................................................262.000.001.001.00-----------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCGGG.....................................................252.000.001.001.00-----------------------------------------
......................................................................................................................................TTTGGGGTTTTTTCTTTCTG................................................................................................202.000.002.00------------------------------------------
.............................................................................................................................................................TGTTTTTTGTTTTTTTTGTTTTCGAG...................................................................262.000.00-2.00-----------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCGCGT....................................................282.000.00-2.00-----------------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTGTTTTCGAG.............................................................282.000.00-1.001.00----------------------------------------
..............................................................................................ATATTTTTAAATTTTTTTCTTGCTTGTTCCATA...........................................................................................................................332.000.00--2.00----------------------------------------
..............................................................................................................................................................................................................AACAGTGGGAATGTTTGACATCTGAATG................2812.002.00--------2.00----------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTCTC.....................................................................202.000.00-1.001.00----------------------------------------
................................................................................................................................................................TTTTTGTTTTTTTTGTTTTTGTTTTCTC..............................................................282.000.002.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTCTTC.......................................................292.000.002.00------------------------------------------
..................................................................................................................................................................................................................................TCTGAATGCAGAGTGCTCCT....2012.002.00--------------1.00--------------------1.00-------
.............................................................................................................................................................TGTTTTTTGTTTTTTTTGTTTTTGTTCGTT...............................................................302.000.00-2.00-----------------------------------------
...............................................................................................................................AGGATTCTTTGGGGTTTTTTCTTTTTGC...............................................................................................2812.002.00-2.00-----------------------------------------
.......................................................................................................................................TTGGGGTTTTTTCTTTTTTGAG.............................................................................................222.000.00-2.00-----------------------------------------
........................................................................................GATAGGATATTTTTAAATTTTTTCCTG.......................................................................................................................................272.000.00--2.00----------------------------------------
...........................................................................................................................................................................TTTGTTTTTGTTTTTTTTTTTTCTGCG....................................................272.000.001.001.00-----------------------------------------
...............................................................................................................................AGGATTCTTTGGGGTTTTTTCTTTTCGC...............................................................................................282.000.002.00------------------------------------------
......................................................................................................................................................TTTGCTTTGTTTTTTGTTTTTTTCTTG.........................................................................271.000.00-1.00-----------------------------------------
........................................................................................................................................................................................TTTTTTTTTCATGCAGAATCTAAACAGTG.....................................2911.001.00--1.00----------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCACG.....................................................271.000.00-1.00-----------------------------------------
..............................................................AGAGGTTGCTTTGCATTT..........................................................................................................................................................................1811.001.00---------------------------1.00---------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTTTTAC......................................................321.000.001.00------------------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTCGTT.....................................................................201.000.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTCACG.......................................................291.000.001.00------------------------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCTGAG....................................................291.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................TTTCATGCAGAATCTAAACAGCGGG...................................251.000.00-1.00-----------------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTGTTTTCG...............................................................261.000.00-1.00-----------------------------------------
..................................................................................................................................................................................................................GTGGGAATGTTTGACATCTGAATGCAGAGTGC........3211.001.00-------------1.00-----------------------------
..............................................................................................................................................................................................................AACAGTGGGAATGTTTGAC.........................1911.001.00---1.00---------------------------------------
..........................................................................................................................................................CTTTGTTTTTTGTTTTTTTTGTTTTCG.....................................................................271.000.001.00------------------------------------------
................................................CTGATCTGTTATCAAGAGGTTGCTTTGCATTTATTT......................................................................................................................................................................3611.001.00----------------------------------------1.00--
...........................................................................................................................................................................TTTGTTTTTGTTTTTTTTTTTTCGG......................................................251.000.001.00------------------------------------------
...............................................................................................................................................................................................................ACAGTGGGAATGTTTGACATCTGAAT.................2611.001.00-----------------------1.00-------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTTTC........................................................2811.001.001.00------------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTCCGC.....................................................................221.000.00-1.00-----------------------------------------
............................................................................................................................................................TTGTTTTTTGTTTTTTTTGTCCTG......................................................................241.000.00--1.00----------------------------------------
.............................................................................................................................................................................................................AAACAGTGGGAATGTTTGACATCTGAATGC...............3011.001.00----------------------------------1.00--------
.........................................................................................................................................GGGGTTTTTTCTTTTTGC...............................................................................................1811.001.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTAGAG.......................................................291.000.00--1.00----------------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTTTAAT......................................................291.000.001.00------------------------------------------
......................TGACAGTATGTAATGGTG..................................................................................................................................................................................................................181.000.00----------------------1.00--------------------
.........................................................................................................TTTTTTTCTTGCTTGTTTCAG............................................................................................................................211.000.00--1.00----------------------------------------
.............................................................................................................................................................................TGTTTTTGTTTTTTTTTTTTCAGGG....................................................251.000.001.00------------------------------------------
..........................................................................................................................................................................................................TCTAAACAGTGGGAATG...............................1711.001.00----1.00--------------------------------------
.....................................................................................................................................................TTTTGCTTTGTTTTTTGTTTTTCT.............................................................................241.000.00-1.00-----------------------------------------
...........................................................................................................................................................................TTTGTTTTTGTTTTTTTTTTTTCCTGC....................................................271.000.001.00------------------------------------------
.............................................................................................................................................................................TGTTTTTGTTTTTTTTTTTTCGCG.....................................................241.000.001.00------------------------------------------
.....................................................................................................................................................TTTTGCTTTGTTTTTTGTTTTTGAG............................................................................251.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................................AACAGTGGGAATGTTTGACA........................2011.001.00--------------------------------1.00----------
..............................................................................................................................................................GTTTTTTGTTTTTTTTGTTTTTCTGG..................................................................261.000.001.00------------------------------------------
..........................................................................................................................................................CTTTGTTTTTTGTTTTTTTTGTTCCG......................................................................261.000.001.00------------------------------------------
............................................................................................................................................................................................................TAAACAGTGGGAATGTTTGACATCTGAATGC...............3111.001.00------------1.00------------------------------
...........................................................................................................................................................................................................CTAAACAGTGGGAATGTTT............................1911.001.00----------1.00--------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTCGTG....................................................................211.000.001.00------------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTATCT....................................................................231.000.00--1.00----------------------------------------
..............................................................................................ATATTTTTAAATTTTTTTCTTG......................................................................................................................................2211.001.00-------1.00-----------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTCTCT....................................................................211.000.001.00------------------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTTTCATT.....................................................301.000.001.00------------------------------------------
.....................................................................................................................................................TTTTGCTTTGTTTTTTGTTTTTGATT...........................................................................261.000.00-1.00-----------------------------------------
..................................................................................................................................................................TTTGTTTTTTTTGTTTTTGTTTTTTTTTTTTC........................................................3211.001.001.00------------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCTCGA....................................................261.000.00-1.00-----------------------------------------
......................................................................................................................................TTTGGGGTTTTTTCTTTTTTGAG.............................................................................................231.000.00-1.00-----------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTGGTT...........................................................271.000.001.00------------------------------------------
.................................................................................................................................GATTCTTTGGGGTTTTTTCTTGC..................................................................................................231.000.001.00------------------------------------------
.......................................................................................................................................................................................TTTTTTTTTTCATGCAGAACGGA............................................231.000.00------------------------------1.00------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCGG......................................................271.000.00-1.00-----------------------------------------
..................................................................................................................................................................TTTGTTTTTTTTGTTTTTGTCTTA................................................................241.000.00-1.00-----------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCCTTT....................................................281.000.00--1.00----------------------------------------
..................................................................................................................................................................TTTGTTTTTTTTGTTTTTCCGC..................................................................221.000.001.00------------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTCG..............................................................241.000.00-1.00-----------------------------------------
......................................................................................................................................TTTGGGGTTTTTTCTTTTCT................................................................................................201.000.001.00------------------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTGTTTATT...............................................................261.000.00-1.00-----------------------------------------
..................................................................................................................................................................................................................................TCTGAATGCAGAGTGCTCCTA...2111.001.00------------------------------------1.00------
.............................................................................................................................................................TGTTTTTTGTTTTTTTTGTTTTCG.....................................................................241.000.00-1.00-----------------------------------------
..................................................................................................................................................................................................................GTGGGAATGTTTGACATCTGAATGCAGAGT..........3011.001.00----------------------------1.00--------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTTTC........................................................3011.001.00-1.00-----------------------------------------
.......................................................................................................................................TTGGGGTTTTTTCTTTAGG................................................................................................191.000.00-1.00-----------------------------------------
...............................................................................................................................................................................TTTTTGTTTTTTTTTTTTCGCTA....................................................231.000.00-1.00-----------------------------------------
..........................................................................................................................................GGGTTTTTTCTTTTTGCTTTGTTTTCTTC...................................................................................291.000.00-1.00-----------------------------------------
..................................................................................................................................................TCTTTTTGCTTTGTTTTGTAC...................................................................................211.000.00-1.00-----------------------------------------
.....................................................................................................................................................TTTTGCTTTGTTTTTTGTTTTTTTTTG..........................................................................271.000.00-1.00-----------------------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCCCGC....................................................291.000.001.00------------------------------------------
...............................................................................................................................................................................TTTTTGTTTTTTTTTTTTCGGG.....................................................221.000.00-1.00-----------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTTTGTTTTTTTCATT..........................................................331.000.00--1.00----------------------------------------
...............................................................................................................................AGGATTCTTTGGGGTTTTTTCTTTGCT................................................................................................271.000.00-1.00-----------------------------------------
..............................................................................................................................................................GTTTTTTGTTTTTTTTGTTTCGAG....................................................................241.000.001.00------------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCATGGAGC.................................................291.000.00-1.00-----------------------------------------
........................................................................................................................................................TGCTTTGTTTTTTGTTTTTTTCTGA.........................................................................251.000.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTCAT............................................................241.000.00-1.00-----------------------------------------
...........................................................................................................................................GGTTTTTTCTTTTTGCTTTGTTTTCTT....................................................................................271.000.001.00------------------------------------------
.......................................................................................................................................................TTGCTTTGTTTTTTGTTTTTTGGA...........................................................................241.000.001.00------------------------------------------
.........................................................................................................................................................GCTTTGTTTTTTGTTTTCCGG............................................................................211.000.001.00------------------------------------------
.......................................................................................................................................TTGGGGTTTTTTCTTTTTGGC..............................................................................................211.000.00-1.00-----------------------------------------
........................................................................................................................................TGGGGTTTTTTCTTTTTTGAC.............................................................................................211.000.00-1.00-----------------------------------------
..............................................................................................................................AAGGATTCTTTGGGGAGGG.........................................................................................................191.000.001.00------------------------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCG.......................................................261.000.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTTTCAAG.....................................................311.000.00--1.00----------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCATGTAAT.................................................291.000.00--1.00----------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTTTAGA......................................................301.000.001.00------------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTCCTT.......................................................311.000.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTCTG........................................................281.000.00--1.00----------------------------------------
............................................................................ATTTATTTGGGGGATAGGATATTTTCA...................................................................................................................................................271.000.001.00------------------------------------------
...................................................................................................................................................................TTGTTTTTTTTGTTTTTAGCC..................................................................211.000.001.00------------------------------------------
.................................................................................................................................................................................TTTGTTTTTTTTTTTTCATGGCA..................................................231.000.00--1.00----------------------------------------
................................................................................................................................................................................TTTTGTTTTTTTTTTTTCGCG.....................................................211.000.001.00------------------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTTTCAAAG....................................................311.000.00--1.00----------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTTCGAG...................................................................241.000.00-1.00-----------------------------------------
..................................................................................................................................................................................................................................TCTGAATGCAGAGTGCTC......1811.001.00----------------1.00--------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCGCGC....................................................261.000.001.00------------------------------------------
...........................................................................................................................................................................TTTGTTTTTGTTTTTTTTTTTTCACCG....................................................271.000.001.00------------------------------------------
........................................................................................................................................................TGCTTTGTTTTTTGTTTTTTTGTGG.........................................................................251.000.00-1.00-----------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCTTCG....................................................281.000.00-1.00-----------------------------------------
.....................................................................................................................................................TTTTGCTTTGTTTTTTGTTTTTTTTTTG.........................................................................281.000.00--1.00----------------------------------------
................................................................AGGTTGCTTTGCATTTATTTGGGGGATAGGAT..........................................................................................................................................................3211.001.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................ATCTGAATGCAGAGTGCTCCTAATT2511.001.00-----------------------------1.00-------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTCGCT.............................................................251.000.001.00------------------------------------------
..................................................................................................................................................................TTTGTTTTTTTTGTTTTTGTTCGGG...............................................................251.000.001.00------------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCCGCG....................................................281.000.001.00------------------------------------------
...................................................................................................................................................................TTGTTTTTTTTGTTTTTGTTTTTTTTTCTCC........................................................311.000.00-1.00-----------------------------------------
...................................................................................................................................................................TTGTTTTTTTTGTTTTTGTTTTCGAG.............................................................261.000.001.00------------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTTTGTTTTTTGAG............................................................311.000.001.00------------------------------------------
................................................................................................................................................................................TTTTGTTTTTTTTTTTTCGGC.....................................................211.000.001.00------------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTTTTCTA.....................................................331.000.001.00------------------------------------------
.......................................................................................................................................................................................................................AATGTTTGACATCTGAATGC...............2011.001.00---------------1.00---------------------------
.........................................................................................................TTTTTTTCTTGCTTGGCGA..............................................................................................................................191.000.001.00------------------------------------------
..............................................................................................ATATTTTTAAATTTTTTTCTCTG.....................................................................................................................................231.000.00-------1.00-----------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTCCGT....................................................................231.000.00--1.00----------------------------------------
......................................................................................................................................................TTTGCTTTGTTTTTTGTTTTTTTTTCAG........................................................................281.000.001.00------------------------------------------
........................................................................................................................................................................TTTTTTGTTTTTGTTTTTTTTTTCGAG.......................................................271.000.001.00------------------------------------------
....................................................................................................................................TCTTTGGGGTTTTTTCTTAA..................................................................................................201.000.00-1.00-----------------------------------------
....................................................................................................................................TCTTTGGGGTTTTTTCTTTCTG................................................................................................221.000.00-1.00-----------------------------------------
..........................................................................................................................................................CTTTGTTTTTTGTTTTTTTTGATTC.......................................................................251.000.001.00------------------------------------------
...............................................................................................................................................................................TTTTTGTTTTTTTTTTTTCGGC.....................................................221.000.00-1.00-----------------------------------------
........................................................................................................................................................................................................AATCTAAACAGTGGGAATGTT.............................2111.001.00------------------1.00------------------------
............................................................................................................................................................TTGTTTTTTGTTTTTTTTGTTTTGCCG...................................................................271.000.001.00------------------------------------------
..........................................................................................................................................................CTTTGTTTTTTGTTTTTTTTACCC........................................................................241.000.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTCATG.......................................................291.000.00---------------------------------------1.00---
...........................................................................................................................................................................TTTGTTTTTGTTTTTTTTTTTTCATG.....................................................2611.001.00--1.00----------------------------------------
..............................................................................................ATATTTTTAAATTTTTTTCTTGCTTG..................................................................................................................................2611.001.00--1.00----------------------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCATG.....................................................2811.001.001.00------------------------------------------
..................................................................................................................................................TCTTTTTGCTTTGTTTTTTTTG..................................................................................221.000.00--1.00----------------------------------------
...................................................................................................................................................................TTGTTTTTTTTGTTTCGGT....................................................................191.000.001.00------------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCTTGC....................................................281.000.001.00------------------------------------------
...........................................................................................................................................GGTTTTTTCTTTTTGCTTATTT.........................................................................................221.000.00--1.00----------------------------------------
..................................................................................................................................................................................................................GTGGGAATGTTTGACATCTG....................2011.001.00-------------------1.00-----------------------
..................................................................................................................................................................................................................................TCTGAATGCAGAGTGCTCCTAA..2211.001.00-----------------1.00-------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTACC......................................................271.000.001.00------------------------------------------
.............................................................................................................................................................TGTTTTTTGTTTTTTTTGTTCGTT.....................................................................241.000.00-1.00-----------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTTTTCTT.....................................................331.000.001.00------------------------------------------
................................................................................................................................................TTTCTTTTTGCTTTGTTTTTTTT...................................................................................231.000.00-------------------------------1.00-----------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTGTTTTTCCC.............................................................281.000.001.00------------------------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCCCT.....................................................281.000.00-1.00-----------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTCCC.....................................................................221.000.00-1.00-----------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTTTTTTTTCT.......................................................3111.001.00-1.00-----------------------------------------
...................................................................................................................................................................................................................TGGGAATGTTTGACATCTGAATGCAG.............2611.001.00------------------------1.00------------------
.........................................................................................................................................................................................................................TGTTTGACATCTGAATGCAGAGTG.........2411.001.00--------------------------1.00----------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTAATC..................................................................231.000.00-1.00-----------------------------------------
........................................................................TTGCATTTATTTGGGGGATAGGATATTTT.....................................................................................................................................................2911.001.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTTTCTT......................................................3011.001.00-1.00-----------------------------------------
...............................................................................................................................AGGATTCTTTGGGGTTTTTTCTTTTGC................................................................................................271.000.00-1.00-----------------------------------------
....................................................................................................................................................................TGTTTTTTTTGTTTTTGTTTTTCGGC............................................................261.000.001.00------------------------------------------
....................................................................................................................................................TTTTTGCTTTGTTTTTTGTTTTTGTA............................................................................261.000.00-1.00-----------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCGCC.....................................................271.000.001.00------------------------------------------
.........................................................................................................................................................................TTTTTGTTTTTGTTTTTTTTTTTTCCTGC....................................................291.000.001.00------------------------------------------
..........................................................................................................................................................................TTTTGTTTTTGTTTTTTTTTTTTCATG.....................................................2711.001.001.00------------------------------------------
......................................................................................................................................................................TTTTTTTTGTTTTTGTTTTTTTTTTTTGATG.....................................................311.000.00--1.00----------------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTGTTTTCGT..............................................................271.000.001.00------------------------------------------
..............................................................................................................................................................................................................................GACATCTGAATGCAGCGAC.........191.000.00------------1.00------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTCTTC.......................................................281.000.00-1.00-----------------------------------------
..............................................................AGAGGTTGCTTTGCATTTATTTGGGGGATAGG............................................................................................................................................................3211.001.00-1.00-----------------------------------------
..............................................................................................................................................................................................................AACAGTGGGAATGTTTGACATC......................2211.001.00---------------------------------1.00---------
...................................................ATCTGTTATCAAGAGGTCGCT..................................................................................................................................................................................211.000.00-1.00-----------------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTCTCT.......................................................281.000.001.00------------------------------------------
............................................................................................................................................................................TTGTTTTTGTTTTTTTTTTTTCTC......................................................241.000.00-1.00-----------------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTTGAT.......................................................281.000.001.00------------------------------------------
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTTTC........................................................2720.500.500.50------------------------------------------
................................................................................................................................................................................................................CAGTGGGAATGTTTGACA........................1820.500.50-----------------------------------------0.50-
.......................................................................................................................................................................TTTTTTTGTTTTTGTTTTTTTTTTTTCGAG.....................................................3020.500.50-0.50-----------------------------------------
........................................................................................................................................................................TTTTTTGTTTTTGTTTTTTTTTTTTCTG......................................................2850.400.20-0.40-----------------------------------------
.............................................................................................................................................................................................................................TGACATCTGAATGCAG.............1640.250.25------0.25------------------------------------
........................................................................................................................................................................TTTTTTGTTTTTGTTTTTTTTTTTTC........................................................2650.200.200.20------------------------------------------
........................................................................................................................................................................TTTTTTGTTTTTGTTTTTTTTTTTTCCTT.....................................................2950.200.200.20------------------------------------------
........................................................................................................................................................................TTTTTTGTTTTTGTTTTTTTTTTTTCTGAG....................................................3050.200.20-0.20-----------------------------------------
.................................................................................................................................................................TTTTGTTTTTTTTGTTTTTGTTTTTTTTTT...........................................................3080.120.12-0.12-----------------------------------------
................................................................................................................................................................................TTTTGTTTTTTTTTTTTCATG.....................................................2180.120.12--0.12----------------------------------------
................................................................................................................................................................................TTTTGTTTTTTTTTTTTCATGG....................................................2280.120.120.12------------------------------------------
.......................................................................................................................................................TTGCTTTGTTTTTTGTTTTTTTCTAG.........................................................................2690.110.110.11------------------------------------------
.......................................................................................................................................................TTGCTTTGTTTTTTGTTTTTTT.............................................................................2290.110.110.11------------------------------------------
...........................................................................................................................................GGTTTTTTCTTTTTGCT..............................................................................................1790.110.11------------------------------------------0.11

Antisense strand
AATTAGGTTTTGAGACACATATTGACAGTATGTAATGATAATTATATACTGATCTGTTATCAAGAGGTTGCTTTGCATTTATTTGGGGGATAGGATATTTTTAAATTTTTTTCTTGCTTGTTCTATAAGGATTCTTTGGGGTTTTTTCTTTTTGCTTTGTTTTTTGTTTTTTTTGTTTTTGTTTTTTTTTTTTCATGCAGAATCTAAACAGTGGGAATGTTTGACATCTGAATGCAGAGTGCTCCTAATT
...................................................................................................................((.........((((((((....)))))))).......))...............................................................................................
....................................................................................................101.............................................................165...................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532930(GSM532930)
G702T. (cervix)
GSM532929(GSM532929)
G702N. (cervix)
SRR189783SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM359190(GSM359190)
HepG2_3pM_4. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
.................................................................GGTTGCTTTGCATTTATAA...................................................................................................................................................................... 193.000.00-----3.00-------------------------------------
................................................................................................................................................................TTTTTGTTTTTTTTGTTTTTGTTTTTTTG............................................................. 292.000.00----2.00--------------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTTTGGAA.................................................................. 251.000.00-----------1.00-------------------------------
................................................................................................................................................................................TTTTGTTTTTTTTTTTTCACTTA................................................... 231.000.00-----------1.00-------------------------------
....................................................................................................................................................................................................................................TGAATGCAGAGTGCTAAGG... 191.000.00-------------------------1.00-----------------
.................................AATGATAATTATATAGTG....................................................................................................................................................................................................... 181.000.00----------1.00--------------------------------
...............................................................................................................................................................TTTTTTGTTTTTTTTGTTTTTGTTTG................................................................. 261.000.00----1.00--------------------------------------
.............................................................................................................................................................TGTTTTTTGTTTTTTTTGTTTTCTA.................................................................... 251.000.00---------------------1.00---------------------
................................................................................................................................................................TTTTTGTTTTTTTTGTTTTTGTTTGCA............................................................... 271.000.00--------------------1.00----------------------