ID: uc004bcs.2_intron_0_0_chr9_108320447_f.5p
GENE: (1)
chr9:108320397-108320646+


(7)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(3)
CERVIX 		(2)
FIBROBLAST 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TTGCTGTGAGTGCCGTAAAGCGGAGCGGCTGCAGCCTGCTGTTGAGTGAGGTAAGGTACGGGAGGCTCAGGTCGGTACCCGGGGATGGGTGGGCGCCTTCAGACAGGTACCGCTGGCGACTCGGGTGCCCTTACCGGGCATCCTCCAGCATTCTGGGCACCTGCCTACCCCTTGGTGAGGAGGCCGGCCACAGGCTGAGCGCGCTCCGGGCTGGGTACTCCTCAGTCAGTCCACGAGCATCGCGTGGTAG
.................................................................(((.(((.((((((((((....(((((..((((......)))).))))).....))))))))))...))))))................................................................................................................
.................................................................66.........................................................................141...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)
......................................................................GTCGGTACCCGGGGATGGG.................................................................................................................................................................19112.0012.0012.00-----------------------------------------------
..................................................GTAAGGTACGGGAGGCTC......................................................................................................................................................................................1818.008.006.00------------1.00---------------------------1.00------
......................................................................GTCGGTACCCGGGGATGGGT................................................................................................................................................................2018.008.008.00-----------------------------------------------
......................................................GGTACGGGAGGCTCAGGT..................................................................................................................................................................................1814.004.00---3.00--1.00-----------------------------------------
....................................................................AGGTCGGTACCCGGGGATGGG.................................................................................................................................................................2113.003.00-2.001.00---------------------------------------------
................................................AGGTAAGGTACGGGAGGCTCAG....................................................................................................................................................................................2213.003.00------------2.00--------1.00--------------------------
.....................................GCTGTTGAGTGAGGTAAGG..................................................................................................................................................................................................1913.003.00-1.002.00---------------------------------------------
................................................AGGTAAGGTACGGGAGGCT.......................................................................................................................................................................................1912.002.00-----2.00------------------------------------------
....................................TGCTGTTGAGTGAGGTAAGGTACGG.............................................................................................................................................................................................2512.002.00----------2.00-------------------------------------
..............................................................AGGCTCAGGTCGGTACCC..........................................................................................................................................................................1812.002.00--------1.00-----------------------------1.00---------
.....................................................................................................................GACTCGGGTGCCCTTATTTT.................................................................................................................202.000.00-----------1.00-1.00----------------------------------
...........................................................GGGAGGCTCAGGTCGGTA.............................................................................................................................................................................1812.002.00----------------2.00-------------------------------
....................................................AAGGTACGGGAGGCTCAGG...................................................................................................................................................................................1912.002.00-2.00----------------------------------------------
.........................................................................GGTACCCGGGGATGGGTGG..............................................................................................................................................................1912.002.002.00-----------------------------------------------
...................GCGGAGCGGCTGCAGCCT.....................................................................................................................................................................................................................1812.002.00-----1.00---------1.00--------------------------------
...................GCGGAGCGGCTGCAGCCCGCC..................................................................................................................................................................................................................211.000.00--------------1.00---------------------------------
............................CTGCAGCCTGCTGTTGAGTGAGGTAAGG..................................................................................................................................................................................................2811.001.00-----------------------------------1.00------------
.................................................................CTCAGGTCGGTACCCGGGGATGGG.................................................................................................................................................................2411.001.00-------1.00----------------------------------------
..................AGCGGAGCGGCTGCAGCCTGC...................................................................................................................................................................................................................2111.001.00-------------------------------------1.00----------
...................GCGGAGCGGCTGCAGCCTGCTG.................................................................................................................................................................................................................2211.001.00------------------------------------1.00-----------
...................GCGGAGCGGCTGCAGCCTG....................................................................................................................................................................................................................1911.001.00---1.00--------------------------------------------
...............................................................GGCTCAGGTCGGTACCCG.........................................................................................................................................................................1811.001.00---------------------------1.00--------------------
......................................CTGTTGAGTGAGGTAAGGTA................................................................................................................................................................................................2011.001.00----------------------------1.00-------------------
...............................................................................CGGGGATGGGTGGGCGGCC........................................................................................................................................................191.000.00----------------------------------1.00-------------
.................................................GGTAAGGTACGGGAGGCTCAGG...................................................................................................................................................................................2211.001.00-1.00----------------------------------------------
..................................................GTAAGGTACGGGAGGCT.......................................................................................................................................................................................1711.001.00--------------------1.00---------------------------
.....................................................................................................................GACTCGGGTGCCCTTATTTA.................................................................................................................201.000.00----------------------------------------------1.00-
...................................................................CAGGTCGGTACCCGGGGATGGGTG...............................................................................................................................................................2411.001.00------------------------------------------1.00-----
.....................................................................................................................GACTCGGGTGCCCTTATTT..................................................................................................................191.000.00----------------------------------------1.00-------
.......................................................................................................................................................................CCCCTTGGTGAGGAGAGC.................................................................181.000.00-------------------------------------------1.00----
.............................................GTGAGGTAAGGTACGGGAGGCTCAGG...................................................................................................................................................................................2611.001.00-------------------------------1.00----------------
......................................................................GTCGGTACCCGGGGATGG..................................................................................................................................................................1811.001.00--1.00---------------------------------------------
..................................................................TCAGGTCGGTACCCGGGGATGGG.................................................................................................................................................................2311.001.00--------------------------------1.00---------------
..................AGCGGAGCGGCTGCACCCG.....................................................................................................................................................................................................................191.000.00---1.00--------------------------------------------
....................................................................AGGTCGGTACCCGGGGATGGGC................................................................................................................................................................2211.003.00--------------------------------------------1.00---
..................AGCGGAGCGGCTGCAGCCCGC...................................................................................................................................................................................................................211.000.00---------------------------------------------1.00--
...................................................TAAGGTACGGGAGGCTCAG....................................................................................................................................................................................1911.001.00-1.00----------------------------------------------
....................CGGAGCGGCTGCAGCCTGCTG.................................................................................................................................................................................................................2111.001.00---------1.00--------------------------------------
....................................................AAGGTACGGGAGGCTCAGGTCGGT..............................................................................................................................................................................2411.001.00----1.00-------------------------------------------
................................................AGGTAAGGTACGGGAGGCTCAGGT..................................................................................................................................................................................2411.001.00------------------1.00-----------------------------
..................AGCGGAGCGGCTGCAGCCTGCTG.................................................................................................................................................................................................................2311.001.00--------------1.00---------------------------------
..................AGCGGAGCGGCTGCAGCCTG....................................................................................................................................................................................................................2011.001.00--------------------------1.00---------------------
.....................................................AGGTACGGGAGGCTCAG....................................................................................................................................................................................1711.001.00----1.00-------------------------------------------
...........................GCTGCAGCCTGCTGTTGA.............................................................................................................................................................................................................1811.001.00--------1.00---------------------------------------
.....................................................................................................................GACTCGGGTGCCCTTATT...................................................................................................................181.000.00-----------1.00------------------------------------
..................AGCGGAGCGGCTGCAGCCTGCA..................................................................................................................................................................................................................2211.001.00-----------------------------------------------1.00
..................................................GTAAGGTACGGGAGGCTCAG....................................................................................................................................................................................2011.001.00----1.00-------------------------------------------
.....................................................................................................................GACTCGGGTGCCCTTACTT..................................................................................................................191.000.00---------1.00--------------------------------------
...........................................GAGTGAGGTAAGGTACGGG............................................................................................................................................................................................1911.001.00------1.00-----------------------------------------
................................................AGGTAAGGTACGGGAGGCTCAGGTCGG...............................................................................................................................................................................2711.001.00----------------------1.00-------------------------
................................................AGGTAAGGTACGGGAGGCTC......................................................................................................................................................................................2011.001.00-----------------------1.00------------------------
..................................................GTAAGGTACGGGAGGCTCAGGTCGGT..............................................................................................................................................................................2611.001.00--1.00---------------------------------------------
............................................AGTGAGGTAAGGTACGGGAGGCTCAG....................................................................................................................................................................................2611.001.00-------1.00----------------------------------------
.........................................................ACGGGAGGCTCAGGTCGGT..............................................................................................................................................................................1911.001.00-------------------1.00----------------------------
.......................................................................................................................................................................................................CGCGCTCCGGGCTGGA...................................161.000.00-----------------1.00------------------------------
................................................AGGTAAGGTACGGGAGGCTCA.....................................................................................................................................................................................2111.001.00---------------------------------1.00--------------
.................................................................CTCAGGTCGGTACCCGGGGAT....................................................................................................................................................................2111.001.00-------------------------1.00----------------------
.................AAGCGGAGCGGCTGCAGCCT.....................................................................................................................................................................................................................2011.001.00---------------1.00--------------------------------
....................CGGAGCGGCTGCAGC.......................................................................................................................................................................................................................1580.120.12-----------------0.12------------------------------

Antisense strand
TTGCTGTGAGTGCCGTAAAGCGGAGCGGCTGCAGCCTGCTGTTGAGTGAGGTAAGGTACGGGAGGCTCAGGTCGGTACCCGGGGATGGGTGGGCGCCTTCAGACAGGTACCGCTGGCGACTCGGGTGCCCTTACCGGGCATCCTCCAGCATTCTGGGCACCTGCCTACCCCTTGGTGAGGAGGCCGGCCACAGGCTGAGCGCGCTCCGGGCTGGGTACTCCTCAGTCAGTCCACGAGCATCGCGTGGTAG
.................................................................(((.(((.((((((((((....(((((..((((......)))).))))).....))))))))))...))))))................................................................................................................
.................................................................66.........................................................................141...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)
...........................................................................................................................GGTGCCCTTACCGGGA............................................................................................................... 161.000.00------------------------------1.00-----------------
..............................................................................................................................................................ACCTGCCTACCCCTTCA........................................................................... 171.000.00-----------------------------1.00------------------
............................................................................................................................................................................................................................GCTCGTGGACTGACTGAG............ 1811.001.00----1.00-------------------------------------------
..........................................................................................................................................................................................GCCACAGGCTGAGCGCTC.............................................. 181.000.00---------------------------------------1.00--------
...............................................................................................CAGCGGTACCTGTCTGAAGG....................................................................................................................................... 2011.001.00--1.00---------------------------------------------
................................................................................................................................................................................................GGCTGAGCGCGCTCCCGG........................................ 181.000.00------------------------1.00-----------------------
..................................................................................GGCGCCCACCCATCC......................................................................................................................................................... 1560.170.17------0.17-----------------------------------------